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Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Authors :
Francesco Asnicar
Andrew Maltez Thomas
Francesco Beghini
Claudia Mengoni
Serena Manara
Paolo Manghi
Qiyun Zhu
Mattia Bolzan
Fabio Cumbo
Uyen May
Jon G. Sanders
Moreno Zolfo
Evguenia Kopylova
Edoardo Pasolli
Rob Knight
Siavash Mirarab
Curtis Huttenhower
Nicola Segata
Source :
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Publication Year :
2020
Publisher :
Nature Portfolio, 2020.

Abstract

The increasing amount of sequenced microbial genomes and metagenomes requires platforms for efficient integrated analysis. Here, Asnicar et al. present PhyloPhlAn 3.0, a pipeline allowing large-scale microbial genome characterization and phylogenetic contextualization at multiple levels of resolution.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
11
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.2c31a8ecbcb48b48383a2c552e60cf7
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-020-16366-7