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The complete chloroplast genome sequence of Vitellaria paradoxa
- Source :
- Mitochondrial DNA. Part B. Resources, Vol 4, Iss 2, Pp 2403-2404 (2019)
- Publication Year :
- 2019
- Publisher :
- Taylor & Francis Group, 2019.
-
Abstract
- Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum.
Details
- Language :
- English
- ISSN :
- 23802359
- Volume :
- 4
- Issue :
- 2
- Database :
- Directory of Open Access Journals
- Journal :
- Mitochondrial DNA. Part B. Resources
- Publication Type :
- Academic Journal
- Accession number :
- edsdoj.2fe373a751ec42f5a065ea3ed66d851b
- Document Type :
- article
- Full Text :
- https://doi.org/10.1080/23802359.2019.1636727