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The complete chloroplast genome sequence of Vitellaria paradoxa

Authors :
Yi Wang
Xiaolong Yuan
Zhonghua Chen
Ting Luo
Source :
Mitochondrial DNA. Part B. Resources, Vol 4, Iss 2, Pp 2403-2404 (2019)
Publication Year :
2019
Publisher :
Taylor & Francis Group, 2019.

Abstract

Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum.

Details

Language :
English
ISSN :
23802359
Volume :
4
Issue :
2
Database :
Directory of Open Access Journals
Journal :
Mitochondrial DNA. Part B. Resources
Publication Type :
Academic Journal
Accession number :
edsdoj.2fe373a751ec42f5a065ea3ed66d851b
Document Type :
article
Full Text :
https://doi.org/10.1080/23802359.2019.1636727