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High-quality reference genome of cowpea beetle Callosobruchus maculatus

Authors :
Hao-Ran Lu
Chu-Yang Mao
Li-Jie Zhang
Jin-Wu He
Xie-Shuang Wang
Xin-Ying Zhang
Wei-Li Fan
Zheng-Zhong Huang
Le Zong
Chu-Han Cui
Feng-Ming Wu
Xue-Li Wang
Zhen Zou
Xue-Yan Li
Si-Qin Ge
Source :
Scientific Data, Vol 11, Iss 1, Pp 1-9 (2024)
Publication Year :
2024
Publisher :
Nature Portfolio, 2024.

Abstract

Abstract Callosobruchus maculatus is one of the most competitive stored grain pests, which causes a great loss to agricultural economy. However, due to an inadequacy of high-quality reference genome, the molecular mechanisms for olfactory and hypoxic adaptations to stored environments are unknown and require to be revealed urgently, which will contribute to the detection and prevention of the invasive pests C. maculatus. Here, we presented a high-quality chromosome-level genome of C. maculatus based on Illumina, Nanopore and Hi-C sequencing data. The total size was 1.2 Gb, and 65.17% (797.47 Mb) of it was identified to be repeat sequences. Among assembled chromosomes, chromosome 10 was considered the X chromosome according to the evidence of reads coverage and homologous genes among species. The current version of high-quality genome provides preferable data resources for the adaptive evolution research of C. maculatus.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20524463
Volume :
11
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Scientific Data
Publication Type :
Academic Journal
Accession number :
edsdoj.319edf5adbc54eb0b710706bfd353b13
Document Type :
article
Full Text :
https://doi.org/10.1038/s41597-024-03638-w