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Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm

Authors :
Hongxu Ding
Eugene F. Douglass
Adam M. Sonabend
Angeliki Mela
Sayantan Bose
Christian Gonzalez
Peter D. Canoll
Peter A. Sims
Mariano J. Alvarez
Andrea Califano
Source :
Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)
Publication Year :
2018
Publisher :
Nature Portfolio, 2018.

Abstract

VIPER has been successfully used to assess the regulatory activities of proteins from gene expression data, but its dependence on tissue-specific molecular profiles limits its applicability. MetaVIPER, introduced here, enables inference of the protein activities in orphan tissues and single cells.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
9
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.3934038bb326419f98860258816b7ced
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-018-03843-3