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The potential of a data centred approach & knowledge graph data representation in chemical safety and drug design

Authors :
Alisa Pavel
Laura A. Saarimäki
Lena Möbus
Antonio Federico
Angela Serra
Dario Greco
Source :
Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 4837-4849 (2022)
Publication Year :
2022
Publisher :
Elsevier, 2022.

Abstract

Big Data pervades nearly all areas of life sciences, yet the analysis of large integrated data sets remains a major challenge. Moreover, the field of life sciences is highly fragmented and, consequently, so is its data, knowledge, and standards. This, in turn, makes integrated data analysis and knowledge gathering across sub-fields a demanding task. At the same time, the integration of various research angles and data types is crucial for modelling the complexity of organisms and biological processes in a holistic manner. This is especially valid in the context of drug development and chemical safety assessment where computational methods can provide solutions for the urgent need of fast, effective, and sustainable approaches. At the same time, such computational methods require the development of methodologies suitable for an integrated and data centred Big Data view. Here we discuss Knowledge Graphs (KG) as a solution to a data centred analysis approach for drug and chemical development and safety assessment. KGs are knowledge bases, data analysis engines, and knowledge discovery systems all in one, allowing them to be used from simple data retrieval, over meta-analysis to complex predictive and knowledge discovery systems. Therefore, KGs have immense potential to advance the data centred approach, the re-usability, and informativity of data. Furthermore, they can improve the power of analysis, and the complexity of modelled processes, all while providing knowledge in a natively human understandable network data model.

Details

Language :
English
ISSN :
20010370
Volume :
20
Issue :
4837-4849
Database :
Directory of Open Access Journals
Journal :
Computational and Structural Biotechnology Journal
Publication Type :
Academic Journal
Accession number :
edsdoj.43350388dcf84573a21327d56763af50
Document Type :
article
Full Text :
https://doi.org/10.1016/j.csbj.2022.08.061