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Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets

Authors :
Anna C. Belkina
Christopher O. Ciccolella
Rina Anno
Richard Halpert
Josef Spidlen
Jennifer E. Snyder-Cappione
Source :
Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
Publication Year :
2019
Publisher :
Nature Portfolio, 2019.

Abstract

Visualisation tools that use dimensionality reduction, such as t-SNE, provide poor visualisation on large data sets of millions of observations. Here the authors present opt-SNE, that automatically finds data set-tailored parameters for t-SNE to optimise visualisation and improve analysis.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
10
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.5126a248205487bb5a7c54c11c0bcc3
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-019-13055-y