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Construction of the optimization prognostic model based on differentially expressed immune genes of lung adenocarcinoma

Authors :
Yang Zhai
Bin Zhao
Yuzhen Wang
Lina Li
Jingjin Li
Xu Li
Linhan Chang
Qian Chen
Zijun Liao
Source :
BMC Cancer, Vol 21, Iss 1, Pp 1-13 (2021)
Publication Year :
2021
Publisher :
BMC, 2021.

Abstract

Abstract Background Lung adenocarcinoma (LUAD) is the most common pathology subtype of lung cancer. In recent years, immunotherapy, targeted therapy and chemotherapeutics conferred a certain curative effects. However, the effect and prognosis of LUAD patients are different, and the efficacy of existing LUAD risk prediction models is unsatisfactory. Methods The Cancer Genome Atlas (TCGA) LUAD dataset was downloaded. The differentially expressed immune genes (DEIGs) were analyzed with edgeR and DESeq2. The prognostic DEIGs were identified by COX regression. Protein-protein interaction (PPI) network was inferred by STRING using prognostic DEIGs with p value

Details

Language :
English
ISSN :
14712407
Volume :
21
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Cancer
Publication Type :
Academic Journal
Accession number :
edsdoj.5704d31ca1004a8d8c23a051ccd8cccb
Document Type :
article
Full Text :
https://doi.org/10.1186/s12885-021-07911-8