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Identification and Analysis of a Four-Gene Set for Diagnosing SFTS Virus Infection Based on Machine Learning Methods and Its Association with Immune Cell Infiltration

Authors :
Tao Huang
Xueqi Wang
Yuqian Mi
Tiezhu Liu
Yang Li
Ruixue Zhang
Zhen Qian
Yanhan Wen
Boyang Li
Lina Sun
Wei Wu
Jiandong Li
Shiwen Wang
Mifang Liang
Source :
Viruses, Vol 15, Iss 10, p 2126 (2023)
Publication Year :
2023
Publisher :
MDPI AG, 2023.

Abstract

Severe Fever with thrombocytopenia syndrome (SFTS) is a highly fatal viral infectious disease that poses a significant threat to public health. Currently, the phase and pathogenesis of SFTS are not well understood, and there are no specific vaccines or effective treatment available. Therefore, it is crucial to identify biomarkers for diagnosing acute SFTS, which has a high mortality rate. In this study, we conducted differentially expressed genes (DEGs) analysis and WGCNA module analysis on the GSE144358 dataset, comparing the acute phase of SFTSV-infected patients with healthy individuals. Through the LASSO–Cox and random forest algorithms, a total of 2128 genes were analyzed, leading to the identification of four genes: ADIPOR1, CENPO, E2F2, and H2AC17. The GSEA analysis of these four genes demonstrated a significant correlation with immune cell function and cell cycle, aligning with the functional enrichment findings of DEGs. Furthermore, we also utilized CIBERSORT to analyze the immune cell infiltration and its correlation with characteristic genes. The results indicate that the combination of ADIPOR1, CENPO, E2F2, and H2AC17 genes has the potential as characteristic genes for diagnosing and studying the acute phase of SFTS virus (SFTSV) infection.

Details

Language :
English
ISSN :
19994915
Volume :
15
Issue :
10
Database :
Directory of Open Access Journals
Journal :
Viruses
Publication Type :
Academic Journal
Accession number :
edsdoj.5cb4f87661954df49acc0d3f125a91d0
Document Type :
article
Full Text :
https://doi.org/10.3390/v15102126