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Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage

Authors :
Jialei Ji
Honghao Lv
Limei Yang
Zhiyuan Fang
Mu Zhuang
Yangyong Zhang
Yumei Liu
Zhansheng Li
Source :
PeerJ, Vol 6, p e5379 (2018)
Publication Year :
2018
Publisher :
PeerJ Inc., 2018.

Abstract

Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this study, a total of 89 nsLTP genes were identified via comprehensive research on the cabbage genome. These cabbage nsLTPs were classified into six types (1, 2, C, D, E and G). The gene structure, physical and chemical characteristics, homology, conserved motifs, subcellular localization, tertiary structure and phylogeny of the cabbage nsLTPs were comprehensively investigated. Spatial expression analysis revealed that most of the identified nsLTP genes were positively expressed in cabbage, and many of them exhibited patterns of differential and tissue-specific expression. The expression patterns of the nsLTP genes in response to biotic and abiotic stresses were also investigated. Numerous nsLTP genes in cabbage were found to be related to the resistance to stress. Moreover, the expression patterns of some nsLTP paralogs in cabbage showed evident divergence. This study promotes the understanding of nsLTPs characteristics in cabbage and lays the foundation for further functional studies investigating cabbage nsLTPs.

Details

Language :
English
ISSN :
21678359
Volume :
6
Database :
Directory of Open Access Journals
Journal :
PeerJ
Publication Type :
Academic Journal
Accession number :
edsdoj.687bb8b2c7f4dbba6eb310af3c244e4
Document Type :
article
Full Text :
https://doi.org/10.7717/peerj.5379