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Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.

Authors :
ChloƩ Sarnowski
Han Chen
Mary L Biggs
Sylvia Wassertheil-Smoller
Jan Bressler
Marguerite R Irvin
Kathleen A Ryan
David Karasik
Donna K Arnett
L Adrienne Cupples
David W Fardo
Stephanie M Gogarten
Benjamin D Heavner
Deepti Jain
Hyun Min Kang
Charles Kooperberg
Arch G Mainous
Braxton D Mitchell
Alanna C Morrison
Jeffrey R O'Connell
Bruce M Psaty
Kenneth Rice
Albert V Smith
Ramachandran S Vasan
B Gwen Windham
Douglas P Kiel
Joanne M Murabito
Kathryn L Lunetta
TOPMed Longevity and Healthy Aging Working Group
from the NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
Source :
PLoS ONE, Vol 16, Iss 7, p e0253611 (2021)
Publication Year :
2021
Publisher :
Public Library of Science (PLoS), 2021.

Abstract

Handgrip strength is a widely used measure of muscle strength and a predictor of a range of morbidities including cardiovascular diseases and all-cause mortality. Previous genome-wide association studies of handgrip strength have focused on common variants primarily in persons of European descent. We aimed to identify rare and ancestry-specific genetic variants associated with handgrip strength by conducting whole-genome sequence association analyses using 13,552 participants from six studies representing diverse population groups from the Trans-Omics in Precision Medicine (TOPMed) Program. By leveraging multiple handgrip strength measures performed in study participants over time, we increased our effective sample size by 7-12%. Single-variant analyses identified ten handgrip strength loci among African-Americans: four rare variants, five low-frequency variants, and one common variant. One significant and four suggestive genes were identified associated with handgrip strength when aggregating rare and functional variants; all associations were ancestry-specific. We additionally leveraged the different ancestries available in the UK Biobank to further explore the ancestry-specific association signals from the single-variant association analyses. In conclusion, our study identified 11 new loci associated with handgrip strength with rare and/or ancestry-specific genetic variations, highlighting the added value of whole-genome sequencing in diverse samples. Several of the associations identified using single-variant or aggregate analyses lie in genes with a function relevant to the brain or muscle or were reported to be associated with muscle or age-related traits. Further studies in samples with sequence data and diverse ancestries are needed to confirm these findings.

Subjects

Subjects :
Medicine
Science

Details

Language :
English
ISSN :
19326203
Volume :
16
Issue :
7
Database :
Directory of Open Access Journals
Journal :
PLoS ONE
Publication Type :
Academic Journal
Accession number :
edsdoj.6f9d153af14487282b1e003198122ed
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pone.0253611