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A transfer learning approach to facilitate ComBat-based harmonization of multicentre radiomic features in new datasets.

Authors :
Ronrick Da-Ano
François Lucia
Ingrid Masson
Ronan Abgral
Joanne Alfieri
Caroline Rousseau
Augustin Mervoyer
Caroline Reinhold
Olivier Pradier
Ulrike Schick
Dimitris Visvikis
Mathieu Hatt
Source :
PLoS ONE, Vol 16, Iss 7, p e0253653 (2021)
Publication Year :
2021
Publisher :
Public Library of Science (PLoS), 2021.

Abstract

PurposeTo facilitate the demonstration of the prognostic value of radiomics, multicenter radiomics studies are needed. Pooling radiomic features of such data in a statistical analysis is however challenging, as they are sensitive to the variability in scanner models, acquisition protocols and reconstruction settings, which is often unavoidable in a multicentre retrospective analysis. A statistical harmonization strategy called ComBat was utilized in radiomics studies to deal with the "center-effect". The goal of the present work was to integrate a transfer learning (TL) technique within ComBat-and recently developed alternate versions of ComBat with improved flexibility (M-ComBat) and robustness (B-ComBat)-to allow the use of a previously determined harmonization transform to the radiomic feature values of new patients from an already known center.Material and methodsThe proposed TL approach were incorporated in the four versions of ComBat (standard, B, M, and B-M ComBat). The proposed approach was evaluated using a dataset of 189 locally advanced cervical cancer patients from 3 centers, with magnetic resonance imaging (MRI) and positron emission tomography (PET) images, with the clinical endpoint of predicting local failure. The impact performance of the TL approach was evaluated by comparing the harmonization achieved using only parts of the data to the reference (harmonization achieved using all the available data). It was performed through three different machine learning pipelines.ResultsThe proposed TL technique was successful in harmonizing features of new patients from a known center in all versions of ComBat, leading to predictive models reaching similar performance as the ones developed using the features harmonized with all the data available.ConclusionThe proposed TL approach enables applying a previously determined ComBat transform to new, previously unseen data.

Subjects

Subjects :
Medicine
Science

Details

Language :
English
ISSN :
19326203
Volume :
16
Issue :
7
Database :
Directory of Open Access Journals
Journal :
PLoS ONE
Publication Type :
Academic Journal
Accession number :
edsdoj.715ee30ce0ed4be28a31be78d0d2b55f
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pone.0253653