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ITP Adjuster 1.0: A New Utility Program to Adjust Charges in the Topology Files Generated by the PRODRG Server

Authors :
Diogo de Jesus Medeiros
Wilian Augusto Cortopassi
Tanos Celmar Costa França
André Silva Pimentel
Source :
Journal of Chemistry, Vol 2013 (2013)
Publication Year :
2013
Publisher :
Hindawi Limited, 2013.

Abstract

The suitable computation of accurate atomic charges for the GROMACS topology *.itp files of small molecules, generated in the PRODRG server, has been a tricky task nowadays because it does not calculate atomic charges using an ab initio method. Usually additional steps of structure optimization and charges calculation, followed by a tedious manual replacement of atomic charges in the *.itp file, are needed. In order to assist this task, we report here the ITP Adjuster 1.0, a utility program developed to perform the replacement of the PRODRG charges in the *.itp files of small molecules by ab initio charges.

Subjects

Subjects :
Chemistry
QD1-999

Details

Language :
English
ISSN :
20909063 and 20909071
Volume :
2013
Database :
Directory of Open Access Journals
Journal :
Journal of Chemistry
Publication Type :
Academic Journal
Accession number :
edsdoj.737d3815a0af409eb07986dcd0967fec
Document Type :
article
Full Text :
https://doi.org/10.1155/2013/803151