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PGD: Pineapple Genomics Database

Authors :
Huimin Xu
Qingyi Yu
Yan Shi
Xiuting Hua
Haibao Tang
Long Yang
Ray Ming
Jisen Zhang
Source :
Horticulture Research, Vol 5, Iss 1, Pp 1-9 (2018)
Publication Year :
2018
Publisher :
Oxford University Press, 2018.

Abstract

A gene database for everything pineapple The Pineapple Genomic Database has been set up as a go-to platform for researchers to freely search for and access genetic and genomic information on the pineapple. Jisen Zhang of China’s Fujian Agriculture and Forestry University and colleagues set up the database to facilitate the study of the biology, distribution and evolution of the pineapple and its related species. The database provides information on single genes and their biological functions, gene interactions, pineapple RNA data, and information on molecular markers that can identify specific DNA sequences within the pineapple genome. Information in the database can be visualized via any device through a genome browser called JBrowse, or through a web interface, called ViroBlast, which can be used to search for nucleotide and amino acid sequence similarities.

Details

Language :
English
ISSN :
20527276
Volume :
5
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Horticulture Research
Publication Type :
Academic Journal
Accession number :
edsdoj.87bcf7193fe24145b6ab5b26da2c2797
Document Type :
article
Full Text :
https://doi.org/10.1038/s41438-018-0078-2