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ERCC5, HES6 and RORA are potential diagnostic markers of coronary artery disease

Authors :
Zhifeng Bai
Yuanyuan Luo
Linyun Tian
Source :
FEBS Open Bio, Vol 12, Iss 10, Pp 1814-1827 (2022)
Publication Year :
2022
Publisher :
Wiley, 2022.

Abstract

The mortality rate of patients with coronary artery disease (CAD) increases year by year, and the age of onset is decreasing, primarily because of the lack of an efficient and convenient diagnostic method for CAD. In the present study, we aimed to detect CAD‐correlated biomarkers and the regulatory pathways involved through weighted co‐expression network analysis. The microarray data originated from 93 CAD patients and 48 controls within the Gene Expression Omnibus (GEO) database. The gene network was implemented by weighted gene co‐expression network analysis, and the genes were observed to fall into a range of modules. We took the intersection of genes in the modules most correlated with CAD with the differentially expressed genes of CAD, which were identified by applying the limma package. Lasso regression and support vector machine recursive feature elimination algorithms were used to determine CAD candidate signature genes. The biomarkers for diagnosing CAD were detected by validating candidate signature gene diagnostic capabilities (receiver operating characteristic curves) based on data sets from GEO. Three modules were selected, and 26 vital genes were identified. Eight of these genes were reported as the optimal candidate features in terms of CAD diagnosis. Through receiver operating characteristic curve analysis, we identified three genes (ERCC5, HES6 and RORA; area under the curve > 0.8) capable of distinguishing CAD from the control, and observed that these genes are correlated with the immune response. In summary, ERCC5, HES6 and RORA may have potential for diagnosis of CAD.

Details

Language :
English
ISSN :
22115463
Volume :
12
Issue :
10
Database :
Directory of Open Access Journals
Journal :
FEBS Open Bio
Publication Type :
Academic Journal
Accession number :
edsdoj.89687be02426480d874aebeac3b38cd9
Document Type :
article
Full Text :
https://doi.org/10.1002/2211-5463.13469