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Digital Droplet PCR in Hematologic Malignancies: A New Useful Molecular Tool

Authors :
Sara Galimberti
Serena Balducci
Francesca Guerrini
Marzia Del Re
Rossella Cacciola
Source :
Diagnostics, Vol 12, Iss 6, p 1305 (2022)
Publication Year :
2022
Publisher :
MDPI AG, 2022.

Abstract

Digital droplet PCR (ddPCR) is a recent version of quantitative PCR (QT-PCR), useful for measuring gene expression, doing clonality assays and detecting hot spot mutations. In respect of QT-PCR, ddPCR is more sensitive, does not need any reference curve and can quantify one quarter of samples already defined as “positive but not quantifiable”. In the IgH and TCR clonality assessment, ddPCR recapitulates the allele-specific oligonucleotide PCR (ASO-PCR), being not adapt for detecting clonal evolution, that, on the contrary, does not represent a pitfall for the next generation sequencing (NGS) technique. Differently from NGS, ddPCR is not able to sequence the whole gene, but it is useful, cheaper, and less time-consuming when hot spot mutations are the targets, such as occurs with IDH1, IDH2, NPM1 in acute leukemias or T315I mutation in Philadelphia-positive leukemias or JAK2 in chronic myeloproliferative neoplasms. Further versions of ddPCR, that combine different primers/probes fluorescences and concentrations, allow measuring up to four targets in the same PCR reaction, sparing material, time, and money. ddPCR is also useful for quantitating BCR-ABL1 fusion gene, WT1 expression, donor chimerism, and minimal residual disease, so helping physicians to realize that “patient-tailored therapy” that is the aim of the modern hematology.

Details

Language :
English
ISSN :
20754418
Volume :
12
Issue :
6
Database :
Directory of Open Access Journals
Journal :
Diagnostics
Publication Type :
Academic Journal
Accession number :
edsdoj.89f0e9f656734d4b9278467d28977ebc
Document Type :
article
Full Text :
https://doi.org/10.3390/diagnostics12061305