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Author response to Cunha et al

Authors :
Vivek Subbiah
Sara Ahmed
Christian Rolfo
Aung Naing
Joud Hajjar
Bettzy Stephen
Jordi Rodon Ahnert
Daniel D Karp
Rivka R Colen
Murat Ak
Mira Ayoub
Nabil Elshafeey
Priyadarshini Mamindla
Pascal O Zinn
Chaan Ng
Raghu Vikram
Spyridon Bakas
Christine B Peterson
Source :
Journal for ImmunoTherapy of Cancer, Vol 9, Iss 7 (2021)
Publication Year :
2021
Publisher :
BMJ Publishing Group, 2021.

Abstract

The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et al, we explain and discuss the reasons behind choosing LASSO (Least Absolute Shrinkage and Selection Operator) and XGBoost (eXtreme Gradient Boosting) with LOOCV (Leave-One-Out Cross-Validation) as the feature selection and classifier method, respectively for our radiomics models. Also, we highlight what care was taken to avoid any overfitting on the models. Further, we checked for the multicollinearity of the features. Additionally, we performed 10-fold cross-validation instead of LOOCV to see the predictive performance of our radiomics models.

Details

Language :
English
ISSN :
20511426
Volume :
9
Issue :
7
Database :
Directory of Open Access Journals
Journal :
Journal for ImmunoTherapy of Cancer
Publication Type :
Academic Journal
Accession number :
edsdoj.8c521476fa4b4f408e287c5dfc55f7d1
Document Type :
article
Full Text :
https://doi.org/10.1136/jitc-2021-003299