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Identification and development of an independent immune-related genes prognostic model for breast cancer

Authors :
Lin Chen
Yuxiang Dong
Yitong Pan
Yuhan Zhang
Ping Liu
Junyi Wang
Chen Chen
Jianing Lu
Yun Yu
Rong Deng
Source :
BMC Cancer, Vol 21, Iss 1, Pp 1-13 (2021)
Publication Year :
2021
Publisher :
BMC, 2021.

Abstract

Abstract Background Breast cancer is one of the main malignant tumors that threaten the lives of women, which has received more and more clinical attention worldwide. There are increasing evidences showing that the immune micro-environment of breast cancer (BC) seriously affects the clinical outcome. This study aims to explore the role of tumor immune genes in the prognosis of BC patients and construct an immune-related genes prognostic index. Methods The list of 2498 immune genes was obtained from ImmPort database. In addition, gene expression data and clinical characteristics data of BC patients were also obtained from the TCGA database. The prognostic correlation of the differential genes was analyzed through Survival package. Cox regression analysis was performed to analyze the prognostic effect of immune genes. According to the regression coefficients of prognostic immune genes in regression analysis, an immune risk scores model was established. Gene set enrichment analysis (GSEA) was performed to probe the biological correlation of immune gene scores. P

Details

Language :
English
ISSN :
14712407
Volume :
21
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Cancer
Publication Type :
Academic Journal
Accession number :
edsdoj.92f134d8816d4627a255bc44525a0b10
Document Type :
article
Full Text :
https://doi.org/10.1186/s12885-021-08041-x