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Genome build information is an essential part of genomic track files

Authors :
Chakravarthi Kanduri
Diana Domanska
Eivind Hovig
Geir Kjetil Sandve
Source :
Genome Biology, Vol 18, Iss 1, Pp 1-5 (2017)
Publication Year :
2017
Publisher :
BMC, 2017.

Abstract

Abstract Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. We show that this information is essential to correctly interpret and analyse the genomic intervals contained in genomic track files. Although not a substitute for best practices, we also provide a tool to predict the genome build version of genomic track files.

Details

Language :
English
ISSN :
1474760X
Volume :
18
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Genome Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.9b668f9da3574d0aa9d82025a8fcc3dd
Document Type :
article
Full Text :
https://doi.org/10.1186/s13059-017-1312-1