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Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

Authors :
Hina Kalra
Richard J Simpson
Hong Ji
Elena Aikawa
Peter Altevogt
Philip Askenase
Vincent C Bond
Francesc E Borràs
Xandra Breakefield
Vivian Budnik
Edit Buzas
Giovanni Camussi
Aled Clayton
Emanuele Cocucci
Juan M Falcon-Perez
Susanne Gabrielsson
Yong Song Gho
Dwijendra Gupta
H C Harsha
An Hendrix
Andrew F Hill
Jameel M Inal
Guido Jenster
Eva-Maria Krämer-Albers
Sai Kiang Lim
Alicia Llorente
Jan Lötvall
Antonio Marcilla
Lucia Mincheva-Nilsson
Irina Nazarenko
Rienk Nieuwland
Esther N M Nolte-'t Hoen
Akhilesh Pandey
Tushar Patel
Melissa G Piper
Stefano Pluchino
T S Keshava Prasad
Lawrence Rajendran
Graca Raposo
Michel Record
Gavin E Reid
Francisco Sánchez-Madrid
Raymond M Schiffelers
Pia Siljander
Allan Stensballe
Willem Stoorvogel
Douglas Taylor
Clotilde Thery
Hadi Valadi
Bas W M van Balkom
Jesús Vázquez
Michel Vidal
Marca H M Wauben
María Yáñez-Mó
Margot Zoeller
Suresh Mathivanan
Source :
PLoS Biology, Vol 10, Iss 12, p e1001450 (2012)
Publication Year :
2012
Publisher :
Public Library of Science (PLoS), 2012.

Abstract

Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field.

Subjects

Subjects :
Biology (General)
QH301-705.5

Details

Language :
English
ISSN :
15449173 and 15457885
Volume :
10
Issue :
12
Database :
Directory of Open Access Journals
Journal :
PLoS Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.b0c2f7b05ccd44f1b43fc0989fed5ece
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pbio.1001450