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Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis

Authors :
Yanlin Wang
Yixin Wang
Yujia Yang
Gang Ni
Yulong Li
Muyan Chen
Source :
Scientific Data, Vol 10, Iss 1, Pp 1-11 (2023)
Publication Year :
2023
Publisher :
Nature Portfolio, 2023.

Abstract

Abstract Asterias amurensis has attracted widespread concern because of its population outbreaks, which has impacted fisheries and aquaculture, as well as disrupting local ecosystems. A high-quality reference genome is necessary to better investigate mechanisms of outbreak and adaptive changes. Combining PacBio HiFi and Hi-C sequencing data, we generated a chromosome-level A. amurensis genome with a size of 491.53 Mb. The contig N50 and scaffold N50 were 8.05 and 23.75 Mb, respectively. The result of BUSCO analysis revealed a completeness score of 98.85%. A total of 16,531 protein-coding genes were predicted in the genome, of which 94.63% were functionally annotated. The high-quality genome assembly resulting from this study will provide a valuable genetic resource for future research on the mechanism of population outbreaks and invasion ecology.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20524463
Volume :
10
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Scientific Data
Publication Type :
Academic Journal
Accession number :
edsdoj.b3980ad5b2274d8599780d04fe2d7e2b
Document Type :
article
Full Text :
https://doi.org/10.1038/s41597-023-02688-w