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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Authors :
White Joseph
Stoeckert Christian J
Sherlock Gavin
Quackenbush John
Petersen Kjell
Miller Michael
Maier Donald S
Liu Junmin
Irizarry Rafael A
Holloway Ele
Farne Anna
Causton Helen C
Spellman Paul T
Rocca-Serra Philippe
Rayner Tim F
Whetzel Patricia L
Wymore Farrell
Parkinson Helen
Sarkans Ugis
Ball Catherine A
Brazma Alvis
Source :
BMC Bioinformatics, Vol 7, Iss 1, p 489 (2006)
Publication Year :
2006
Publisher :
BMC, 2006.

Abstract

Abstract Background Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. Results We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. Conclusion MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.

Details

Language :
English
ISSN :
14712105
Volume :
7
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Bioinformatics
Publication Type :
Academic Journal
Accession number :
edsdoj.f5e312ee926247f780445c799b4eaaeb
Document Type :
article
Full Text :
https://doi.org/10.1186/1471-2105-7-489