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PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial.

Authors :
Michael Pickles
Anne Cori
William J M Probert
Rafael Sauter
Robert Hinch
Sarah Fidler
Helen Ayles
Peter Bock
Deborah Donnell
Ethan Wilson
Estelle Piwowar-Manning
Sian Floyd
Richard J Hayes
Christophe Fraser
HPTN 071 (PopART) Study Team
Source :
PLoS Computational Biology, Vol 17, Iss 9, p e1009301 (2021)
Publication Year :
2021
Publisher :
Public Library of Science (PLoS), 2021.

Abstract

Mathematical models are powerful tools in HIV epidemiology, producing quantitative projections of key indicators such as HIV incidence and prevalence. In order to improve the accuracy of predictions, such models need to incorporate a number of behavioural and biological heterogeneities, especially those related to the sexual network within which HIV transmission occurs. An individual-based model, which explicitly models sexual partnerships, is thus often the most natural type of model to choose. In this paper we present PopART-IBM, a computationally efficient individual-based model capable of simulating 50 years of an HIV epidemic in a large, high-prevalence community in under a minute. We show how the model calibrates within a Bayesian inference framework to detailed age- and sex-stratified data from multiple sources on HIV prevalence, awareness of HIV status, ART status, and viral suppression for an HPTN 071 (PopART) study community in Zambia, and present future projections of HIV prevalence and incidence for this community in the absence of trial intervention.

Subjects

Subjects :
Biology (General)
QH301-705.5

Details

Language :
English
ISSN :
1553734X and 15537358
Volume :
17
Issue :
9
Database :
Directory of Open Access Journals
Journal :
PLoS Computational Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.ffef60ff94443cda079aebd0c49e70c
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pcbi.1009301