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SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes [version 1; referees: 2 approved]

Authors :
Jennifer Wyffels
Benjamin L. King
James Vincent
Chuming Chen
Cathy H. Wu
Shawn W. Polson
Author Affiliations :
<relatesTo>1</relatesTo>Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA<br /><relatesTo>2</relatesTo>Mount Desert Island Biological Laboratory, Salisbury Cove, ME, 04672, USA<br /><relatesTo>3</relatesTo>Vermont Genetics Network, University of Vermont, Burlington, VT, 05405, USA
Source :
F1000Research. 3:191
Publication Year :
2014
Publisher :
London, UK: F1000 Research Limited, 2014.

Abstract

Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcriptomic and protein sequence data. These data are widely available for many sarcopterygii (coelacanth, lungfish and tetrapods) and actinoptergii (ray-finned fish including teleosts) taxa, but limited for chondrichthyan fishes. In this study, we summarize available data for chondrichthyes and describe resources for one of the largest projects to characterize one of these fish, Leucoraja erinacea, the little skate. SkateBase ( http://skatebase.org) serves as the skate genome project portal linking data, research tools, and teaching resources.

Details

ISSN :
20461402
Volume :
3
Database :
F1000Research
Journal :
F1000Research
Notes :
[version 1; referees: 2 approved]
Publication Type :
Academic Journal
Accession number :
edsfor.10.12688.f1000research.4996.1
Document Type :
research-article
Full Text :
https://doi.org/10.12688/f1000research.4996.1