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regionReport: Interactive reports for region-based analyses [version 1; referees: 1 approved, 1 approved with reservations, 1 not approved]

Authors :
Leonardo Collado-Torres
Andrew E. Jaffe
Jeffrey T. Leek
Author Affiliations :
<relatesTo>1</relatesTo>Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA<br /><relatesTo>2</relatesTo>Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, Maryland, 21205, USA<br /><relatesTo>3</relatesTo>Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland, 21205, USA<br /><relatesTo>4</relatesTo>Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA
Source :
F1000Research. 4:105
Publication Year :
2015
Publisher :
London, UK: F1000 Research Limited, 2015.

Abstract

regionReport is an R package for generating detailed interactive reports from regions of the genome. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions and reproducibility information. regionReport can easily be expanded with report templates for other specialized analyses. In particular, regionReport has an extensive report template for exploring derfinder results from annotation-agnostic RNA-seq differential expression analyses.

Details

ISSN :
20461402
Volume :
4
Database :
F1000Research
Journal :
F1000Research
Notes :
[version 1; referees: 1 approved, 1 approved with reservations, 1 not approved]
Publication Type :
Academic Journal
Accession number :
edsfor.10.12688.f1000research.6379.1
Document Type :
software-tool
Full Text :
https://doi.org/10.12688/f1000research.6379.1