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Viewing RNA-seq data on the entire human genome [version 1; referees: 3 approved]
- Source :
- F1000Research. 6:596
- Publication Year :
- 2017
- Publisher :
- London, UK: F1000 Research Limited, 2017.
-
Abstract
- RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI’s Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.
Details
- ISSN :
- 20461402
- Volume :
- 6
- Database :
- F1000Research
- Journal :
- F1000Research
- Notes :
- [version 1; referees: 3 approved]
- Publication Type :
- Academic Journal
- Accession number :
- edsfor.10.12688.f1000research.9762.1
- Document Type :
- software-tool
- Full Text :
- https://doi.org/10.12688/f1000research.9762.1