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The IPDGC/GP2 Hackathon - an open science event for training in data science, genomics, and collaboration using Parkinson's disease data

Authors :
Michael J. Fox Foundation for Parkinson's Research
Aligning Science Against Parkinson's
National Institutes of Health (US)
National Institute on Aging (US)
National Institute of Neurological Disorders and Stroke (US)
Leonard, Hampton [0000-0003-2390-8110]
Illarionova, Anastasia [0000-0002-1711-7155]
Moore, Anni [0000-0003-1953-6449]
Bustos, Bernabé I. [0000-0003-2679-9503]
Huxford, Brook [0000-0002-5908-6983]
Storm, Catherine S. [0000-0003-4957-1712]
Towns, Clodagh [0000-0001-8418-6241]
Yu, Eric [0000-0003-3525-4564]
Elsayed, Inas [0000-0003-4646-8218]
Lake, Julie [0000-0002-3441-2455]
Brolin, Kajsa [0000-0003-4832-922X]
Senkevich, Konstantin [0000-0003-3407-5716]
Tan, Manuela M. X. [0000-0001-5835-669X]
Makarious, Mary B [.0000-0002-7978-1051]
Pillay, Nikita Simone [0000-0002-9058-0920]
Betancor, Oswaldo Lorenzo [0000-0002-5607-8363]
Real, Raquel [0000-0001-8117-742X]
Reynolds, Regina H. [0000-0001-6470-7919]
Scotton, William J. [0000-0003-0607-3190]
Singleton, Andrew [0000-0001-5606-700X]
Dey, Sumit [0000-0002-9087-4486]
Blauwendraat, Cornelis [0000-0001-9358-8111]
Noyce, Alastair [0000-0003-3027-5497]
Leonard, Hampton
Murtadha, Ruqaya
Martínez-Carrasco, Alejandro
Jama, Alina
Müller-Nedebock, Amica Corda
Gil-Martínez, Ana Luisa
Illarionova, Anastasia
Moore, Anni
Bustos, Bernabé I.
Jadhav, Bharati
Huxford, Brook
Storm, Catherine S.
Towns, Clodagh
Vitale, Dan
Chetty, Devina
Yu, Eric
Grenn, Francis P.
Salazar, Gabriela
Rateau, Geoffrey
Iwaki, Hirotaka
Elsayed, Inas
Foote, Isabelle Francesca
Jansen van Rensburg, Zuné
Kim, Jonggeol Jeff
Yuan, Jie
Lake, Julie
Brolin, Kajsa
Senkevich, Konstantin
Wu, Lesley
Tan, Manuela M. X.
Periñán, María Teresa
Makarious, Mary B.
Ta, Michael
Pillay, Nikita Simone
Betancor, Oswaldo Lorenzo
Reyes-Pérez, Paula R.
Álvarez Jerez, Pilar
Saini, Prabhjyot
Al-Ouran, Rami
Sivakumar, Ramiya
Real, Raquel
Reynolds, Regina H.
Hu, Ruifneg
Abrahams, Shameemah
Rao, Shilpa C.
Antar, Tarek
Leal, Thiago Peixoto
Iankova, Vassilena
Scotton, William J.
Song, Yeajin
Singleton, Andrew
Nalls, Mike A.
Dey, Sumit
Bandres-Ciga, Sara
Blauwendraat, Cornelis
Noyce, Alastair
International Parkinson’s Disease Genomics Consortium
Global Parkinson’s Genetics Program
Michael J. Fox Foundation for Parkinson's Research
Aligning Science Against Parkinson's
National Institutes of Health (US)
National Institute on Aging (US)
National Institute of Neurological Disorders and Stroke (US)
Leonard, Hampton [0000-0003-2390-8110]
Illarionova, Anastasia [0000-0002-1711-7155]
Moore, Anni [0000-0003-1953-6449]
Bustos, Bernabé I. [0000-0003-2679-9503]
Huxford, Brook [0000-0002-5908-6983]
Storm, Catherine S. [0000-0003-4957-1712]
Towns, Clodagh [0000-0001-8418-6241]
Yu, Eric [0000-0003-3525-4564]
Elsayed, Inas [0000-0003-4646-8218]
Lake, Julie [0000-0002-3441-2455]
Brolin, Kajsa [0000-0003-4832-922X]
Senkevich, Konstantin [0000-0003-3407-5716]
Tan, Manuela M. X. [0000-0001-5835-669X]
Makarious, Mary B [.0000-0002-7978-1051]
Pillay, Nikita Simone [0000-0002-9058-0920]
Betancor, Oswaldo Lorenzo [0000-0002-5607-8363]
Real, Raquel [0000-0001-8117-742X]
Reynolds, Regina H. [0000-0001-6470-7919]
Scotton, William J. [0000-0003-0607-3190]
Singleton, Andrew [0000-0001-5606-700X]
Dey, Sumit [0000-0002-9087-4486]
Blauwendraat, Cornelis [0000-0001-9358-8111]
Noyce, Alastair [0000-0003-3027-5497]
Leonard, Hampton
Murtadha, Ruqaya
Martínez-Carrasco, Alejandro
Jama, Alina
Müller-Nedebock, Amica Corda
Gil-Martínez, Ana Luisa
Illarionova, Anastasia
Moore, Anni
Bustos, Bernabé I.
Jadhav, Bharati
Huxford, Brook
Storm, Catherine S.
Towns, Clodagh
Vitale, Dan
Chetty, Devina
Yu, Eric
Grenn, Francis P.
Salazar, Gabriela
Rateau, Geoffrey
Iwaki, Hirotaka
Elsayed, Inas
Foote, Isabelle Francesca
Jansen van Rensburg, Zuné
Kim, Jonggeol Jeff
Yuan, Jie
Lake, Julie
Brolin, Kajsa
Senkevich, Konstantin
Wu, Lesley
Tan, Manuela M. X.
Periñán, María Teresa
Makarious, Mary B.
Ta, Michael
Pillay, Nikita Simone
Betancor, Oswaldo Lorenzo
Reyes-Pérez, Paula R.
Álvarez Jerez, Pilar
Saini, Prabhjyot
Al-Ouran, Rami
Sivakumar, Ramiya
Real, Raquel
Reynolds, Regina H.
Hu, Ruifneg
Abrahams, Shameemah
Rao, Shilpa C.
Antar, Tarek
Leal, Thiago Peixoto
Iankova, Vassilena
Scotton, William J.
Song, Yeajin
Singleton, Andrew
Nalls, Mike A.
Dey, Sumit
Bandres-Ciga, Sara
Blauwendraat, Cornelis
Noyce, Alastair
International Parkinson’s Disease Genomics Consortium
Global Parkinson’s Genetics Program
Publication Year :
2023

Abstract

Open science and collaboration are necessary to facilitate the advancement of Parkinson's disease (PD) research. Hackathons are collaborative events that bring together people with different skill sets and backgrounds to generate resources and creative solutions to problems. These events can be used as training and networking opportunities, thus we coordinated a virtual 3-day hackathon event, during which 49 early-career scientists from 12 countries built tools and pipelines with a focus on PD. Resources were created with the goal of helping scientists accelerate their own research by having access to the necessary code and tools. Each team was allocated one of nine different projects, each with a different goal. These included developing post-genome-wide association studies (GWAS) analysis pipelines, downstream analysis of genetic variation pipelines, and various visualization tools. Hackathons are a valuable approach to inspire creative thinking, supplement training in data science, and foster collaborative scientific relationships, which are foundational practices for early-career researchers. The resources generated can be used to accelerate research on the genetics of PD.

Details

Database :
OAIster
Notes :
English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1416002353
Document Type :
Electronic Resource