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IMA genome-F18 : The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Authors :
Ministry of Education, Youth and Sports (Czech Republic)
Mendel University
Department of Energy (US)
Joint Genome Institute (US)
Bioenergy Research Center (US)
Department of Science and Innovation (South Africa)
National Research Foundation (South Africa)
Visagie, Cobus M.
Magistà, Donato
Ferrara, Massimo
Balocchi, Felipe
Duong, Tuan A.
Eichmeier, Ales
Gramaje, David
Aylward, Janneke
Baker, Scott E.
Barnes, Irene
Calhoun, Sara
Angelis, Maria de
Frisvad, Jens C.
Hakalova, Eliska
Hayes, Richard D.
Houbraken, Jos
Grigoriev, Igor V.
LaButti, Kurt
Leal, Catarina
Lipzen, Anna
Ng, Vivian
Pangilinan, Jasmyn
Pecenka, Jakub
Perrone, Giancarlo
Piso, Anja
Savage, Emily
Spetik, Milan
Wingfield, Michael J.
Zhang, Yu
Wingfield, Brenda D.
Ministry of Education, Youth and Sports (Czech Republic)
Mendel University
Department of Energy (US)
Joint Genome Institute (US)
Bioenergy Research Center (US)
Department of Science and Innovation (South Africa)
National Research Foundation (South Africa)
Visagie, Cobus M.
Magistà, Donato
Ferrara, Massimo
Balocchi, Felipe
Duong, Tuan A.
Eichmeier, Ales
Gramaje, David
Aylward, Janneke
Baker, Scott E.
Barnes, Irene
Calhoun, Sara
Angelis, Maria de
Frisvad, Jens C.
Hakalova, Eliska
Hayes, Richard D.
Houbraken, Jos
Grigoriev, Igor V.
LaButti, Kurt
Leal, Catarina
Lipzen, Anna
Ng, Vivian
Pangilinan, Jasmyn
Pecenka, Jakub
Perrone, Giancarlo
Piso, Anja
Savage, Emily
Spetik, Milan
Wingfield, Michael J.
Zhang, Yu
Wingfield, Brenda D.
Publication Year :
2023

Abstract

Sequencing fungal genomes has now become very common and the list of genomes in this manuscript reflects this. Particularly relevant is that the first announcement is a re-identification of Penicillium genomes available on NCBI. The fact that more than 100 of these genomes have been deposited without the correct species names speak volumes to the fact that we must continue training fungal taxonomists and the importance of the International Mycological Association (after which this journal is named). When we started the genome series in 2013, one of the essential aspects was the need to have a phylogenetic tree as part of the manuscript. This came about as the result of a discussion with colleagues in NCBI who were trying to deal with the very many incorrectly identified bacterial genomes (at the time) which had been submitted to NCBI. We are now in the same position with fungal genomes. Sequencing a fungal genome is all too easy but providing a correct species name and ensuring that the fungus has in fact been correctly identified seems to be more difficult. We know that there are thousands of fungi which have not yet been described. The availability of sequence data has made identification of fungi easier but also serves to highlight the need to have a fungal taxonomist in the project to make sure that mistakes are not made.

Details

Database :
OAIster
Notes :
English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1431962740
Document Type :
Electronic Resource