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Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns

Authors :
Ojosnegros, Sara
Alvarez, José Manuel; https://orcid.org/0000-0002-4330-5395
Grossmann, Jonas
Gagliardini, Valeria; https://orcid.org/0000-0001-9471-0764
Quintanilla, Luis G; https://orcid.org/0000-0003-0569-2627
Grossniklaus, Ueli; https://orcid.org/0000-0002-0522-8974
Fernández, Helena; https://orcid.org/0000-0002-5683-0674
Ojosnegros, Sara
Alvarez, José Manuel; https://orcid.org/0000-0002-4330-5395
Grossmann, Jonas
Gagliardini, Valeria; https://orcid.org/0000-0001-9471-0764
Quintanilla, Luis G; https://orcid.org/0000-0003-0569-2627
Grossniklaus, Ueli; https://orcid.org/0000-0002-0522-8974
Fernández, Helena; https://orcid.org/0000-0002-5683-0674
Source :
Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2023). Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns. International Journal of Molecular Sciences, 24(15):online.
Publication Year :
2023

Abstract

Ferns and lycophytes have received scant molecular attention in comparison to angiosperms. The advent of high-throughput technologies allowed an advance towards a greater knowledge of their elusive genomes. In this work, proteomic analyses of heart-shaped gametophytes of two ferns were performed: the apomictic Dryopteris affinis ssp. affinis and its sexual relative Dryopteris oreades. In total, a set of 218 proteins shared by these two gametophytes were analyzed using the STRING database, and their proteome associated with metabolism, genetic information processing, and responses to abiotic stress is discussed. Specifically, we report proteins involved in the metabolism of carbohydrates, lipids, and nucleotides, the biosynthesis of amino acids and secondary compounds, energy, oxide-reduction, transcription, translation, protein folding, sorting and degradation, and responses to abiotic stresses. The interactome of this set of proteins represents a total network composed of 218 nodes and 1792 interactions, obtained mostly from databases and text mining. The interactions among the identified proteins of the ferns D. affinis and D. oreades, together with the description of their biological functions, might contribute to a better understanding of the function and development of ferns as well as fill knowledge gaps in plant evolution.

Details

Database :
OAIster
Journal :
Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2023). Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns. International Journal of Molecular Sciences, 24(15):online.
Notes :
application/pdf, info:doi/10.5167/uzh-236146, English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1443054091
Document Type :
Electronic Resource