31 results on '"Hidekazu Nishimura"'
Search Results
2. Detailed analysis of low temperature inactivation of respiratory syncytial virus
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Yuki Kitai, Oshi Watanabe, Suguru Ohmiya, Tomoko Kisu, Reiko Ota, Kazuyoshi Kawakami, Hiroshi Katoh, Kaori Fukuzawa, Makoto Takeda, and Hidekazu Nishimura
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Medicine ,Science - Abstract
Abstract Our previous findings indicated that many respiratory syncytial virus (RSV) isolates are unstable at 4 °C compared to 20 °C. Some of the strains completely lose infectivity after 24 h at 4 °C. This study analyzed the inactivation process at 4 °C using a representative strain, RSV/Sendai/851/13. After 24 h of storage at 4 °C, the virus was completely inactivated but retained its ability to attach to and to be taken into host cells. It suggested a reduced fusion ability between the viral and cellular membranes. During storage at 4 °C, the RSV fusion (F) protein underwent a conformational change and was no longer recognized by pre-fusion form-specific antibodies. When the RSV/Sendai/851/13 strain was passaged at 4 °C, a variant with an amino acid substitution, I148T, in the F protein fusion peptide was selected. Also, an amino acid change in G protein demonstrating stability at low temperatures was obtained. These results show that the inactivation of RSV at 4 °C is due to the loss of membrane fusion activity in the F protein, which cannot maintain its pre-fusion state at 4 °C.
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- 2024
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3. Exploring Safety Culture in Urban Air Mobility: System of Systems Perspectives Using Enterprise Architecture
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Raquel Hoffmann, Hidekazu Nishimura, and Paulo Gomes
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safety culture ,just culture ,enterprise architecture ,unified architecture framework (UAF) ,urban air mobility (UAM) ,Systems engineering ,TA168 ,Technology (General) ,T1-995 - Abstract
Urban Air Mobility (UAM) is an emerging industry marked by technological advancements, new operational contexts, and regulatory frameworks. This article examines how to improve safety management in UAM operations by adopting a just culture approach from a system of systems perspective. Acknowledging the critical role of front-line workers, especially in the early stage with piloted vehicles, the ecosystem-level approach comprehends multiple providers, operators, and services. Employing an enterprise architecture methodology, we address the challenge of fostering a learning-oriented environment amidst diverse organizational perspectives and stakeholders’ interests. This study identifies key capabilities, functions, and resource exchanges within and across organizations by strategically leveraging architectural views and systemic visualizations. A unified safety committee is discussed and recommended to facilitate consensus among stakeholders, including regulatory bodies, thus paving the way for industry-wide improvements. Findings contribute to evolving safety protocols in UAM operations and serve as a blueprint for integrating cutting-edge methodologies to drive systemic enhancements.
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- 2024
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4. Rapid Detection of SARS-CoV-2 RNA Using Reverse Transcription Recombinase Polymerase Amplification (RT-RPA) with Lateral Flow for N-Protein Gene and Variant-Specific Deletion–Insertion Mutation in S-Protein Gene
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Jose L. Malaga, Monica J. Pajuelo, Michiko Okamoto, Emmanuel Kagning Tsinda, Kanako Otani, Pablo Tsukayama, Lucero Mascaro, Diego Cuicapuza, Masamichi Katsumi, Kazuhisa Kawamura, Hidekazu Nishimura, Akie Sakagami, Yo Ueki, Suguru Omiya, Satoshi Okamoto, Asami Nakayama, Shin-ichi Fujimaki, Chuyao Yu, Sikandar Azam, Eiichi Kodama, Clyde Dapat, Hitoshi Oshitani, and Mayuko Saito
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SARS-CoV-2 ,variant of concern (VOC) ,deletion–insertion mutation ,COVID-19 ,recombinase polymerase amplification (RPA) ,Microbiology ,QR1-502 - Abstract
Rapid molecular testing for severe acute respiratory coronavirus 2 (SARS-CoV-2) variants may contribute to the development of public health measures, particularly in resource-limited areas. Reverse transcription recombinase polymerase amplification using a lateral flow assay (RT-RPA-LF) allows rapid RNA detection without thermal cyclers. In this study, we developed two assays to detect SARS-CoV-2 nucleocapsid (N) gene and Omicron BA.1 spike (S) gene-specific deletion–insertion mutations (del211/ins214). Both tests had a detection limit of 10 copies/µL in vitro and the detection time was approximately 35 min from incubation to detection. The sensitivities of SARS-CoV-2 (N) RT-RPA-LF by viral load categories were 100% for clinical samples with high (>9015.7 copies/µL, cycle quantification (Cq): < 25) and moderate (385.5–9015.7 copies/µL, Cq: 25–29.9) viral load, 83.3% for low (16.5–385.5 copies/µL, Cq: 30–34.9), and 14.3% for very low (
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- 2023
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5. Investigations into the efficacy of a novel extubation-aerosol shield: a cough model study
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Gen Hasegawa, Wataru Sakai, Tomohiro Chaki, Shunsuke Tachibana, Atsushi Kokita, Takenori Kato, Hidekazu Nishimura, and Michiaki Yamakage
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COVID-19 ,Aerosol-generating procedure ,Airway management ,Coronavirus ,Mechanical ventilation ,Tracheal extubation ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Physicians have had to perform numerous extubation procedures during the prolonged coronavirus disease 2019 (COVID 19) pandemic. Future pandemics caused by unknown pathogen may also present a risk of exposure to infectious droplets and aerosols. Aim: This study evaluated the ability of a newly developed aerosol barrier, “Extubation-Aerosol (EA)-Shield” to provide maximum protection from aerosol exposure during extubation via an aerosolised particle count and high-quality visualisation assessments. Methods: We employed a cough model having parameters similar to humans and used micron oil aerosol as well as titanium dioxide as aerosol tracers. Aerosol barrier techniques employing a face mask (group M) and EA-Shield (group H) were compared. Findings: The primary outcome was the difference in the number of particles contacting the physician's face before and after extubation. The maximum distances of aerosol dispersal after extubation were measured as the secondary outcomes. All aerosolised particles of the two tracers were significantly smaller in group H than in group M (p < 0.05). In addition, the sagittal and axial maximum distances and sagittal areas of aerosol dispersal for 3, 5, and 10 s after extubation were significantly smaller in group H than in group M (p < 0.05). Conclusion: This model indicates that EA-Shield could be highly effective in reducing aerosol exposure during extubation. Therefore, we recommend using it as an aerosol barrier when an infectious aerosol risk is suspected.
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- 2022
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6. Antiviral Susceptibilities of Distinct Lineages of Influenza C and D Viruses
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Emi Takashita, Shin Murakami, Yoko Matsuzaki, Seiichiro Fujisaki, Hiroko Morita, Shiho Nagata, Misa Katayama, Katsumi Mizuta, Hidekazu Nishimura, Shinji Watanabe, Taisuke Horimoto, and Hideki Hasegawa
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influenza C virus ,influenza D virus ,antiviral susceptibility ,RNA polymerase inhibitor ,baloxavir ,favipiravir ,Microbiology ,QR1-502 - Abstract
The emergence and spread of antiviral-resistant influenza viruses are of great concern. To minimize the public health risk, it is important to monitor antiviral susceptibilities of influenza viruses. Analyses of the antiviral susceptibilities of influenza A and B viruses have been conducted globally; however, those of influenza C and D viruses are limited. Here, we determined the susceptibilities of influenza C viruses representing all six lineages (C/Taylor, C/Yamagata, C/Sao Paulo, C/Aichi, C/Kanagawa, and C/Mississippi) and influenza D viruses representing four lineages (D/OK, D/660, D/Yama2016, and D/Yama2019) to RNA polymerase inhibitors (baloxavir and favipiravir) by using a focus reduction assay. All viruses tested were susceptible to both drugs. We then performed a genetic analysis to check for amino acid substitutions associated with baloxavir and favipiravir resistance and found that none of the viruses tested possessed these substitutions. Use of the focus reduction assay with the genotypic assay has proven valuable for monitoring the antiviral susceptibilities of influenza C and D viruses as well as influenza A and B viruses. Antiviral susceptibility monitoring of all influenza virus types should continue in order to assess the public health risks posed by these viruses.
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- 2023
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7. Practical Validation of United States Centers for Disease Control and Prevention Assays for the Detection of Human Respiratory Syncytial Virus in Pediatric Inpatients in Japan
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Reiko Suwa, Yohei Kume, Miyuki Kawase, Mina Chishiki, Takashi Ono, Sakurako Norito, Ko Sato, Michiko Okamoto, Satoru Kumaki, Yukio Nagai, Mitsuaki Hosoya, Makoto Takeda, Hidekazu Nishimura, Koichi Hashimoto, and Kazuya Shirato
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human respiratory syncytial virus (RSV) ,human orthopneumovirus ,real-time RT-PCR ,severe acute respiratory infection ,global surveillance ,Medicine - Abstract
The World Health Organization initiated a global surveillance system for respiratory syncytial virus (RSV) in 2015, and the pilot surveillance is ongoing. The real-time RT-PCR RSV assays (Pan-RSV and duplex assays) developed by the United States Centers for Disease Control and Prevention are applied as the standard assays. To introduce these as standard assays in Japan, their practicality was evaluated using 2261 specimens obtained from pediatric inpatients in Japan, which were collected from 2018 to 2021. Although the Pan-RSV and duplex assays had similar analytical sensitivities, they yielded 630 (27.9%) and 786 (34.8%) RSV-positive specimens, respectively (p < 0.001). Although sequencing analysis showed mismatches in the reverse primer used in the Pan-RSV assay, these mismatches did not affect its analytical sensitivity. The analysis of read numbers of RSV isolates from air–liquid interface culture of human bronchial/tracheal epithelial cells showed that the duplex assay had a greater number of reads than did the Pan-RSV assay. Therefore, the duplex assay has superior detection performance compared with the Pan-RSV assay, but the two assays have similar analytical sensitivities.
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- 2022
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8. Effectiveness of Face Masks in Preventing Airborne Transmission of SARS-CoV-2
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Hiroshi Ueki, Yuri Furusawa, Kiyoko Iwatsuki-Horimoto, Masaki Imai, Hiroki Kabata, Hidekazu Nishimura, and Yoshihiro Kawaoka
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COVID-19 ,N95 masks ,SARS-CoV-2 ,aerosols ,droplets ,face masks ,Microbiology ,QR1-502 - Abstract
ABSTRACT Guidelines from the CDC and the WHO recommend the wearing of face masks to prevent the spread of coronavirus (CoV) disease 2019 (COVID-19); however, the protective efficiency of such masks against airborne transmission of infectious severe acute respiratory syndrome CoV-2 (SARS-CoV-2) droplets/aerosols is unknown. Here, we developed an airborne transmission simulator of infectious SARS-CoV-2-containing droplets/aerosols produced by human respiration and coughs and assessed the transmissibility of the infectious droplets/aerosols and the ability of various types of face masks to block the transmission. We found that cotton masks, surgical masks, and N95 masks all have a protective effect with respect to the transmission of infective droplets/aerosols of SARS-CoV-2 and that the protective efficiency was higher when masks were worn by a virus spreader. Importantly, medical masks (surgical masks and even N95 masks) were not able to completely block the transmission of virus droplets/aerosols even when completely sealed. Our data will help medical workers understand the proper use and performance of masks and determine whether they need additional equipment to protect themselves from infected patients. IMPORTANCE Airborne simulation experiments showed that cotton masks, surgical masks, and N95 masks provide some protection from the transmission of infective SARS-CoV-2 droplets/aerosols; however, medical masks (surgical masks and even N95 masks) could not completely block the transmission of virus droplets/aerosols even when sealed.
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- 2020
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9. Variation in Thermal Stability among Respiratory Syncytial Virus Clinical Isolates under Non-Freezing Conditions
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Yuki Kitai, Ko Sato, Kazuya Shirato, Suguru Ohmiya, Oshi Watanabe, Tomoko Kisu, Reiko Ota, Makoto Takeda, Kazuyoshi Kawakami, and Hidekazu Nishimura
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respiratory syncytial virus ,storage temperature ,thermal stability ,virus inactivation ,virus isolation ,Microbiology ,QR1-502 - Abstract
Virus isolates are not only useful for diagnosing infections, e.g., respiratory syncytial virus (RSV), but can also facilitate many aspects of practical viral studies such as analyses of antigenicity and the action mechanisms of antivirals, among others. We have been isolating RSV from clinical specimens from patients with respiratory symptoms every year since our first isolation of RSV in 1964, and isolation rates have varied considerably over the years. As collected clinical specimens are conventionally stored in a refrigerator from collection to inoculation into cells, we hypothesized that certain storage conditions or associated factors might account for these differences. Hence, we evaluated the thermal stability of a total of 64 viruses isolated from 1998 to 2018 upon storage at 4 °C and 20 °C for a defined duration. Interestingly, and contrary to our current understanding, 22 strains (34%) showed a greater loss of viability upon short-term storage at 4 °C than at 20 °C. Thirty-seven strains (57%) showed an almost equal loss, and only five strains (8%) were more stable at 4 °C than at 20 °C. This finding warrants reconsideration of the temperature for the temporary storage of clinical samples for RSV isolation.
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- 2022
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10. Remote sensing of multiple vital signs using a CMOS camera-equipped infrared thermography system and its clinical application in rapidly screening patients with suspected infectious diseases
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Guanghao Sun, Yosuke Nakayama, Sumiyakhand Dagdanpurev, Shigeto Abe, Hidekazu Nishimura, Tetsuo Kirimoto, and Takemi Matsui
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Fever screening ,Thermography ,Infection control ,Vital signs ,Mass screening ,Infectious and parasitic diseases ,RC109-216 - Abstract
Background: Infrared thermography (IRT) is used to screen febrile passengers at international airports, but it suffers from low sensitivity. This study explored the application of a combined visible and thermal image processing approach that uses a CMOS camera equipped with IRT to remotely sense multiple vital signs and screen patients with suspected infectious diseases. Methods: An IRT system that produced visible and thermal images was used for image acquisition. The subjects’ respiration rates were measured by monitoring temperature changes around the nasal areas on thermal images; facial skin temperatures were measured simultaneously. Facial blood circulation causes tiny color changes in visible facial images that enable the determination of the heart rate. A logistic regression discriminant function predicted the likelihood of infection within 10 s, based on the measured vital signs. Sixteen patients with an influenza-like illness and 22 control subjects participated in a clinical test at a clinic in Fukushima, Japan. Results: The vital-sign-based IRT screening system had a sensitivity of 87.5% and a negative predictive value of 91.7%; these values are higher than those of conventional fever-based screening approaches. Conclusions: Multiple vital-sign-based screening efficiently detected patients with suspected infectious diseases. It offers a promising alternative to conventional fever-based screening.
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- 2017
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11. Low response in eliciting neuraminidase inhibition activity of sera among recipients of a split, monovalent pandemic influenza vaccine during the 2009 pandemic.
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Hiroko Ito, Hidekazu Nishimura, Tomoko Kisu, Haruhisa Hagiwara, Oshi Watanabe, Francois Marie Ngako Kadji, Ko Sato, Suguru Omiya, Emi Takashita, and Eri Nobusawa
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Medicine ,Science - Abstract
Antibodies against influenza virus neuraminidase (NA) protein prevent releasing of the virus from host cells and spreading of infection foci and are considered the 'second line of defence' against influenza. Haemagglutinin inhibition antibody-low responders (HI-LRs) are present among influenza split vaccine recipients. The NA inhibition (NAI) antibody response in vaccinees is worth exploring, especially those in the HI-LRs population. We collected pre- and post-vaccination sera from 61 recipients of an inactivated, monovalent, split vaccine against A/H1N1pdm09 and acute and convalescent sera from 49 unvaccinated patients naturally infected with the A/H1N1pdm09 virus during the 2009 influenza pandemic. All samples were subjected to haemagglutinin inhibition (HI), NAI and neutralisation assays. Most paired sera from naturally infected patients exhibited marked elevation in the NAI activity, and seroconversion rates (SCR) among HI-LRs and HI-responders (HI-Rs) were 60% and 87%, respectively; however, those from vaccinees displayed low increase in the NAI activity, and the SCR among HI-LRs and HI-Rs were 0% and 12%, respectively. In both HI-LRs and HI-Rs, vaccination with the inactivated, monovalent, split vaccine failed to elicit the NAI activity efficiently in the sera of the naive population, compared with the natural infection. Hence, the improvement of influenza vaccines is warranted to elicit not only HI but also NAI antibodies.
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- 2020
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12. Effects of high temperature on pandemic and seasonal human influenza viral replication and infection-induced damage in primary human tracheal epithelial cell cultures
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Mutsuo Yamaya, Hidekazu Nishimura, Nadine Lusamba Kalonji, Xue Deng, Haruki Momma, Yoshitaka Shimotai, and Ryoichi Nagatomi
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Cell biology ,Microbiology ,Physiology ,Virology ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
High temperature reduces influenza viral replication; however, the treatment of fevers is thought to be necessary to improve patients' conditions. We examined the effects of high temperature on viral replication and infection-induced damage to human tracheal epithelial cells. Cell viability and dome formation were reduced, the number of detached cells was increased and lactate dehydrogenase (LDH) levels tended to be increased from 72 h to 120 h in uninfected cells cultured at 40 °C. Long-term (72 h and/or 120 h) exposure to high temperatures (39 °C and/or 40 °C) decreased RNA levels and/or viral titers of eight influenza virus strains. Cell viability and dome formation were reduced, and the number of detached cells and LDH levels were increased to a similar extent after infection with the A/H1N1 pdm 2009 virus at 37 °C and 40 °C. High temperature increased the endosomal pH, where the viral RNA enters the cytoplasm, in uninfected cells. High temperature reduced the production of IL-6, which mediate viral replication processes, and IL-1β and IL-8 in uninfected and infected cells. Based on these findings, high temperature may cause similar levels of airway cell damage after infection to cells exposed normal temperatures, although high temperature reduces viral replication by affecting the function of acidic endosomes and inhibiting IL-6-mediated processes.
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- 2019
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13. An Experimental Investigation on Photovoltaic Array Power Output Affected by the Different Partial Shading Conditions
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Ghoname Abdullah, Hidekazu Nishimura, and Toshio Fujita
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photovoltaic (PV) module ,shading ,power output loss ,partial shading conditions (PSCs) ,PV array configuration ,Technology - Abstract
This paper presents an experimental investigation on photovoltaic array (PV array) power output affected by partial shading conditions (PSCs). An experiment setup of a PV array with a series configuration using 2 × 4 photovoltaic modules (PV modules) was built. The power output loss due to the shading effect on the first photovoltaic cells (PV cell) connected with bypass diodes of each photovoltaic module, installed in the PV array in the horizontal direction, was evaluated. Depending on the direction of the sun relative to the PV array configuration, the shading percentage was measured during the test and recorded the current and voltage of the PV array. The performance evaluation of the PV array configurations is referred to with respect to the values of maximum power voltage, the maximum power current, maximum power output, power output losses and fill factor (FF). The experimental results show that 44% shading of the first PV cells affects PV array power output loss by more than 80%.
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- 2021
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14. Analysis of Cooperative Perception in Ant Traffic and Its Effects on Transportation System by Using a Congestion-Free Ant-Trail Model
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Prafull Kasture and Hidekazu Nishimura
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cooperative perception ,congestion-free transportation ,ant traffic ,communication ,intelligent transportation systems ,decentralize transportation ,Chemical technology ,TP1-1185 - Abstract
We investigated agent-based model simulations that mimic an ant transportation system to analyze the cooperative perception and communication in the system. On a trail, ants use cooperative perception through chemotaxis to maintain a constant average velocity irrespective of their density, thereby avoiding traffic jams. Using model simulations and approximate mathematical representations, we analyzed various aspects of the communication system and their effects on cooperative perception in ant traffic. Based on the analysis, insights about the cooperative perception of ants which facilitate decentralized self-organization is presented. We also present values of communication-parameters in ant traffic, where the system conveys traffic conditions to individual ants, which ants use to self-organize and avoid traffic-jams. The mathematical analysis also verifies our findings and provides a better understanding of various model parameters leading to model improvements.
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- 2021
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15. Growth Kinetics of Influenza C Virus Antigenic Mutants That Escaped from Anti-Hemagglutinin Esterase Monoclonal Antibodies and Viral Antigenic Changes Found in Field Isolates
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Yoko Matsuzaki, Kanetsu Sugawara, Yoshitaka Shimotai, Yoko Kadowaki, Seiji Hongo, Katsumi Mizuta, and Hidekazu Nishimura
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influenza C virus ,escape mutant ,antigenic drift ,growth kinetics ,surveillance ,Microbiology ,QR1-502 - Abstract
The antigenicity of the hemagglutinin esterase (HE) glycoprotein of influenza C virus is known to be stable; however, information about residues related to antigenic changes has not yet been fully acquired. Using selection with anti-HE monoclonal antibodies, we previously obtained some escape mutants and identified four antigenic sites, namely, A-1, A-2, A-3, and Y-1. To confirm whether the residues identified as the neutralizing epitope possibly relate to the antigenic drift, we analyzed the growth kinetics of these mutants. The results showed that some viruses with mutations in antigenic site A-1 were able to replicate to titers comparable to that of the wild-type, while others showed reduced titers. The mutants possessing substitutions in the A-2 or A-3 site replicated as efficiently as the wild-type virus. Although the mutant containing a deletion at positions 192 to 195 in the Y-1 site showed lower titers than the wild-type virus, it was confirmed that this region in the 190-loop on the top side of the HE protein is not essential for viral propagation. Then, we revealed that antigenic changes due to substitutions in the A-1, A-3, and/or Y-1 site had occurred in nature in Japan for the past 30 years. These results suggest that some residues (i.e., 125, 176, 192) in the A-1 site, residue 198 in the A-3 site, and residue 190 in the Y-1 site are likely to mediate antigenic drift while maintaining replicative ability.
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- 2021
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16. OX40 ligand newly expressed on bronchiolar progenitors mediates influenza infection and further exacerbates pneumonia
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Taizou Hirano, Toshiaki Kikuchi, Naoki Tode, Arif Santoso, Mitsuhiro Yamada, Yoshiya Mitsuhashi, Riyo Komatsu, Takeshi Kawabe, Takeshi Tanimoto, Naoto Ishii, Yuetsu Tanaka, Hidekazu Nishimura, Toshihiro Nukiwa, Akira Watanabe, and Masakazu Ichinose
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bronchioles ,glycosylation regeneration ,OX40 ligand ,viral pneumonia ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Influenza virus epidemics potentially cause pneumonia, which is responsible for much of the mortality due to the excessive immune responses. The role of costimulatory OX40–OX40 ligand (OX40L) interactions has been explored in the non‐infectious pathology of influenza pneumonia. Here, we describe a critical contribution of OX40L to infectious pathology, with OX40L deficiency, but not OX40 deficiency, resulting in decreased susceptibility to influenza viral infection. Upon infection, bronchiolar progenitors increase in number for repairing the influenza‐damaged epithelia. The OX40L expression is induced on the progenitors for the antiviral immunity during the infectious process. However, these defense‐like host responses lead to more extensive infection owing to the induced OX40L with α‐2,6 sialic acid modification, which augments the interaction with the viral hemagglutinin. In fact, the specific antibody against the sialylated site of OX40L exhibited therapeutic potency in mitigating the OX40L‐mediated susceptibility to influenza. Our data illustrate that the influenza‐induced expression of OX40L on bronchiolar progenitors has pathogenic value to develop a novel therapeutic approach against influenza.
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- 2016
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17. Recent Molecular Evolution of Human Metapneumovirus (HMPV): Subdivision of HMPV A2b Strains
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Naganori Nao, Miwako Saikusa, Ko Sato, Tsuyoshi Sekizuka, Shuzo Usuku, Nobuko Tanaka, Hidekazu Nishimura, and Makoto Takeda
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human metapneumovirus ,HMPV ,molecular epidemiology ,molecular evolution ,subtyping ,nucleotide duplication ,Biology (General) ,QH301-705.5 - Abstract
Human metapneumovirus (HMPV) is a major etiological agent of acute respiratory infections in humans. HMPV has been circulating worldwide for more than six decades and is currently divided into five agreed-upon subtypes: A1, A2a, A2b, B1, and B2. Recently, the novel HMPV subtypes A2c, A2b1, and A2b2 have been proposed. However, the phylogenetic and evolutionary relationships between these recently proposed HMPV subtypes are unclear. Here, we report a genome-wide phylogenetic and evolutionary analysis of 161 HMPV strains, including unique HMPV subtype A2b strains with a 180- or 111-nucleotide duplication in the G gene (nt-dup). Our data demonstrate that the HMPV A2b subtype contains two distinct subtypes, A2b1 and A2b2, and that the HMPV subtypes A2c and A2b2 may be different names for the same subtype. HMPV A2b strains with a nt-dup also belong to subtype A2b2. Molecular evolutionary analyses indicate that subtypes A2b1 and A2b2 diverged from subtype A2b around a decade after the subtype A2 was divided into the subtypes A2a and A2b. These data support the A2b1 and A2b2 subtypes proposed in 2012 and are essential for the unified classification of HMPV subtype A2 strains, which is important for future HMPV surveillance and epidemiological studies.
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- 2020
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18. Consensus and variations in cell line specificity among human metapneumovirus strains.
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Naganori Nao, Ko Sato, Junya Yamagishi, Maino Tahara, Yuichiro Nakatsu, Fumio Seki, Hiroshi Katoh, Aiko Ohnuma, Yuta Shirogane, Masahiro Hayashi, Tamio Suzuki, Hideaki Kikuta, Hidekazu Nishimura, and Makoto Takeda
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Medicine ,Science - Abstract
Human metapneumovirus (HMPV) has been a notable etiological agent of acute respiratory infection in humans, but it was not discovered until 2001, because HMPV replicates only in a limited number of cell lines and the cytopathic effect (CPE) is often mild. To promote the study of HMPV, several groups have generated green fluorescent protein (GFP)-expressing recombinant HMPV strains (HMPVGFP). However, the growing evidence has complicated the understanding of cell line specificity of HMPV, because it seems to vary notably among HMPV strains. In addition, unique A2b clade HMPV strains with a 180-nucleotide duplication in the G gene (HMPV A2b180nt-dup strains) have recently been detected. In this study, we re-evaluated and compared the cell line specificity of clinical isolates of HMPV strains, including the novel HMPV A2b180nt-dup strains, and six recombinant HMPVGFP strains, including the newly generated recombinant HMPV A2b180nt-dup strain, MG0256-EGFP. Our data demonstrate that VeroE6 and LLC-MK2 cells generally showed the highest infectivity with any clinical isolates and recombinant HMPVGFP strains. Other human-derived cell lines (BEAS-2B, A549, HEK293, MNT-1, and HeLa cells) showed certain levels of infectivity with HMPV, but these were significantly lower than those of VeroE6 and LLC-MK2 cells. Also, the infectivity in these suboptimal cell lines varied greatly among HMPV strains. The variations were not directly related to HMPV genotypes, cell lines used for isolation and propagation, specific genome mutations, or nucleotide duplications in the G gene. Thus, these variations in suboptimal cell lines are likely intrinsic to particular HMPV strains.
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- 2019
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19. Requirement analysis considering uncertain customer preference for Kansei quality of product
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Kazuko YAMAGISHI, Kenichi SEKI, and Hidekazu NISHIMURA
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uncertainties ,kansei quality ,customer preference ,evaluation grid method ,multiple-domain matrix (mdm) ,Engineering machinery, tools, and implements ,TA213-215 ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
This paper proposes a requirement analysis approach to increase the robustness of the Kansei quality and maximise customer satisfaction for consumer electronics products. Recently, the importance of the Kansei quality such as comfort and luxury is increasing to enhance value of the product. The Kansei quality of the target product must be assessed through individual customer’s sensitivity, which will discern their preference. The customer preference has inherent uncertainties that depend on personal value. The way of reducing the influence of customer preference diversity for the Kansei quality is desired. First, to capture comprehensively the uncertainties of customer preference for Kansei quality, customer preference is evaluated by a preference evaluation test and cluster analysis. The customer preference clusters resulting from this analysis reveal the preference patterns and their frequencies. To investigate thoroughly requirements including Kansei quality for the product, the evaluation grid method is carried out for each customer preference cluster. Next, to select appropriate design factors, which strongly influence the customer preference in each cluster, multiple regression analysis for them is conducted with preference evaluation test result. Finally, by multiple-domain matrix-based expressions using multiple regression analysis, customer preference, Kansei quality, and physical design are connected with complete coverage. Using this MDM, even in complex product designs, designers can find satisfactory solutions certainly.
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- 2018
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20. Enterokinase Enhances Influenza A Virus Infection by Activating Trypsinogen in Human Cell Lines
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Hideki Hayashi, Yoshinao Kubo, Mai Izumida, Etsuhisa Takahashi, Hiroshi Kido, Ko Sato, Mutsuo Yamaya, Hidekazu Nishimura, Kou Nakayama, and Toshifumi Matsuyama
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enterokinase ,influenza A virus ,hemagglutinin processing ,transmembrane serine protease ,genome structure and function ,Microbiology ,QR1-502 - Abstract
Cleavage and activation of hemagglutinin (HA) by trypsin-like proteases in influenza A virus (IAV) are essential prerequisites for its successful infection and spread. In host cells, some transmembrane serine proteases such as TMPRSS2, TMPRSS4 and HAT, along with plasmin in the bloodstream, have been reported to cleave the HA precursor (HA0) molecule into its active forms, HA1 and HA2. Some trypsinogens can also enhance IAV proliferation in some cell types (e.g., rat cardiomyoblasts). However, the precise activation mechanism for this process is unclear, because the expression level of the physiological activator of the trypsinogens, the TMPRSS15 enterokinase, is expected to be very low in such cells, with the exception of duodenal cells. Here, we show that at least two variant enterokinases are expressed in various human cell lines, including A549 lung-derived cells. The exogenous expression of these enterokinases was able to enhance the proliferation of IAV in 293T human kidney cells, but the proliferation was reduced by knocking down the endogenous enterokinase in A549 cells. The enterokinase was able to enhance HA processing in the cells, which activated trypsinogen in vitro and in the IAV-infected cells also. Therefore, we conclude that enterokinase plays a role in IAV infection and proliferation by activating trypsinogen to process viral HA in human cell lines.
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- 2018
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21. Sound quality design of consumer electronics based on requirement analysis considering use case (Design information management using multidomain matrix)
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Kazuko YAMAGISHI, Koichi OHTOMI, Kenichi SEKI, and Hidekazu NISHIMURA
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sound quality design ,camera shutter sound ,evaluation grid method ,use case ,multidomain matrix ,domain mapping matrix ,design structure matrix ,Mechanical engineering and machinery ,TJ1-1570 ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
The sound quality design of consumer electronics spans multiple design processes, from requirement definition to functional and structural design. It is difficult to reflect customer demands depending on situations to physical design. In this paper, we introduce the evaluation grid method that assumes use cases to clarify customer demands for camera shutter sound depending on situations. To define the sound quality target, customer demands according to use cases are derived from clustering analysis of the evaluation grid test for camera shutter sound. Using domain mapping matrix, we define the relationships between use cases and requirement clusters, requirement clusters and evaluation words for sensory test, evaluation words and tonal factors. By this method, it is possible to evaluate the customer requirements depending on use cases, and define the sound quality target. In order to solve a problem in which relationship among customer requirements, functional and structural design are not clear, we propose an MDM-based representation to show the design information management from requirement definition to functional and structural design. In the requirement definition process, sound quality targets depending on use cases are defined using tonal factors. In order to systematically connect to sound quality metrics in the functional design process and to engineering metrics in the structural design process, DSM and DMM were used. The method was applied to camera shutter sound design and shows its effectiveness.
- Published
- 2018
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22. Evaluation of the information presentation timing for motorcycle head-up display
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Kenichiro ITO, Hidekazu NISHIMURA, and Tetsuro OGI
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head-up display ,immersive cave ,virtual reality ,motorcycle simulator ,navigation system ,human interface ,Mechanical engineering and machinery ,TJ1-1570 ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
Navigation systems are nowadays widely used for cars though it is yet to be able to say popularized for motorcycles. While motorcycle navigation systems are not popularized yet, previous research indicates motorcyclist's high demand against a useful navigation system. The absence of useful motorcycle navigation system is an issue of current products not capable of providing navigation information efficiently. To work with the issue, information presentation design is necessary to consider the motorcyclist's characterful viewpoint movement of looking at the road surface carefully in a vertical movement. As a solution to this issue, we propose the use of head-up display for information presentation. Previous studies have revealed the amount and positions suitable to present information for motorcyclist while riding, although the timing of information presentation is yet to be discussed. Thus, in this paper, the information presentation timing to provide navigation information has been evaluated. Experiment using an immersive CAVE motorcycle simulator was conducted with the configuration of five timings between 25 m to 85 m prior to the intersection under conditions of urban street with 30 km/h speed limit. Durations of motorcyclist's viewpoint movement and five scale subjective ratings were used for evaluation. The experimental results from 10 subjects showed a statistically significant difference in subjective ratings. In conclusion, suitable information presentation timing of riding in urban streets with 30 km/h speed limit is around 40 m to 55 m prior to the target intersection.
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- 2017
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23. Congestion-Free Ant Traffic: Jam Absorption Mechanism in Multiple Platoons
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Prafull Kasture and Hidekazu Nishimura
- Subjects
ant-trail ,self-organization ,swarming ,jam-free traffic ,intelligent transportation system ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In this paper, an agent-based model of ant traffic on a unidirectional single-lane ant trail is presented to provide better understanding of the jam-free traffic of an ant colony. On a trail, the average velocity of ants remains approximately constant irrespective of density, thereby avoiding jamming. Assuming chemotaxis, we analyze platoon-related scenarios to assess the marching-platoon hypothesis, which claims that ants on a trail form a single platoon in which they march synchronously, thereby reducing hindrances due to increasing density. Contrary to that hypothesis, our findings show that ants on a trail do not march synchronously and do experience stop-and-go motion. However, more interestingly, our study also indicates that the ants’ chemotaxis behavior leads to a peculiar jam absorption mechanism, which helps to maintain free flow on a trail and avoids jamming. Again, contrary to the marching-platoon hypothesis, our findings also indicate that, rather than assisting traffic flow, forming a single cluster actually triggers jamming.
- Published
- 2019
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24. Application of system modeling for production system of portable products considering variation in leakage current characteristics of semiconductors
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Yoshio MURAOKA, Kenichi SEKI, and Hidekazu NISHIMURA
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system model ,v-model ,thermal design ,simulation ,sysml ,electronics products ,leakage current ,low temperature injurly ,Mechanical engineering and machinery ,TJ1-1570 ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
Thermal design of electronic products has become increasingly complicated with leakage current characteristics and their variation of semiconductors. This paper proposes an application of a thermal system model to a production system of electronic products. The thermal system model is developed for architecture design to determine design parameters of modules. The model is described with Systems Modeling Language (SysML) considering interactions among parameters of mechanical structure and electrical components that include semiconductors with temperature-dependent leakage current characteristics. In the system model, constraints of heat generation and heat transfer are described using equations and relation between equations and parameters are clarified in parametric diagram. The system model that is developed at the early stage of product design is used at the beginning of integration, such as receiving inspection. To prevent quality degradation by variation in component characteristics, semiconductor components such as processing units are screened with thermal simulation result before their implementation on Printed Wiring Board (PWB). The simulation result is being referred to temperatures that cause low-temperature burn injury. As a case study, a system model of portable product is developed and demonstrates thermal simulation to determine limitation in large variation in leakage current characteristics to satisfy product thermal quality. To improve yield ratio of the semiconductor components after screening, system models are developed for various products in which same processing units are installed. The system model can be applied for each product changing the design parameters and simulate to determine allowable range of component characteristics keeping the product quality. Implementing a component that causes more leakage effect into a product that has more allowable range, degradation of product quality can be avoid without losing the component yield ratio.
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- 2016
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25. Neutralizing Epitopes and Residues Mediating the Potential Antigenic Drift of the Hemagglutinin-Esterase Protein of Influenza C Virus
- Author
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Yoko Matsuzaki, Kanetsu Sugawara, Yuki Furuse, Yoshitaka Shimotai, Seiji Hongo, Katsumi Mizuta, and Hidekazu Nishimura
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influenza C virus ,escape mutant ,antigenic structure ,epidemiology ,Microbiology ,QR1-502 - Abstract
We mapped the hemagglutinin-esterase (HE) antigenic epitopes of the influenza C virus on the three-dimensional (3D) structure of the HE glycoprotein using 246 escape mutants that were selected by a panel of nine anti-HE monoclonal antibodies (MAbs), including seven of the C/Ann Arbor/1/50 virus and two of the C/Yamagata/15/2004 virus. The frequency of variant selection in the presence of anti-HE MAbs was very low, with frequencies ranging from 10−4.62 to 10−7.58 for the C/Ann Arbor/1/50 virus and from 10−7.11 to 10−9.25 for the C/Yamagata/15/2004 virus. Sequencing of mutant HE genes revealed 25 amino acid substitutions at 16 positions in three antigenic sites: A-1, A-2, and A-3, and a newly designated Y-1 site. In the 3D structure, the A-1 site was widely located around the receptor-binding site, the A-2 site was near the receptor-destroying enzyme site, and the Y-1 site was located in the loop on the topside of HE. The hemagglutination inhibition reactions of the MAbs with influenza C viruses, circulating between 1947 and 2016, were consistent with the antigenic-site amino acid changes. We also found some amino acid variations in the antigenic site of recently circulating strains with antigenic changes, suggesting that viruses that have the potential to alter antigenicity continue to circulate in humans.
- Published
- 2018
- Full Text
- View/download PDF
26. Evaluation of information amount to present for motorcycle head-up display
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Kenichiro ITO, Yoshisuke TATEYAMA, Hidekazu NISHIMURA, and Tetsuro OGI
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head-up display ,immersive cave ,virtual reality ,motorcycle simulator ,navigation system ,human interface ,Mechanical engineering and machinery ,TJ1-1570 ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
Car navigation systems have recently become a popular assist system for automobiles. On the other hand, lack of dedicated motorcycle navigation system is still an issue. This is because currently provided navigation system utilizable for motorcycle has difficulties for riders to obtain information while driving. Recent research propose of using the head-up display technology is considered to solve this issue. Although, topics about the amount of information to provide using the head-up display has not yet been discussed. Since providing too much information distracts driving behaviors, amount of information control is required to prevent inattentive driving behaviors. To evaluate the preferable amount of information, we conducted an experiment using the immersive motorcycle simulator integrated with a head-up display. The experiment measured motorcycle riders' viewpoint movements using the eye-mark recorder to observe the duration spent against the information provided using the head-up display. Through the experiment, we presented different length of Japanese syllabary characters (Hiragana) on the head-up display to 10 subjects. Experiments results indicate presenting 5 Japanese syllabary characters is the preferable amount of information to the motorcycle rider while driving. Applying information theories, we conclude that the preferable information transmission rate is approximately 16 bits per seconds.
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- 2015
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27. Establishment and clinical applications of a portable system for capturing influenza viruses released through coughing.
- Author
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Etsuko Hatagishi, Michiko Okamoto, Suguru Ohmiya, Hisakazu Yano, Toru Hori, Wakana Saito, Hiroshi Miki, Yasushi Suzuki, Reiko Saito, Taro Yamamoto, Makoto Shoji, Yoshihisa Morisaki, Soichiro Sakata, and Hidekazu Nishimura
- Subjects
Medicine ,Science - Abstract
Coughing plays an important role in influenza transmission; however, there is insufficient information regarding the viral load in cough because of the lack of convenient and reliable collection methods. We developed a portable airborne particle-collection system to measure the viral load; it is equipped with an air sampler to draw air and pass it through a gelatin membrane filter connected to a cone-shaped, megaphone-like device to guide the cough airflow to the membrane. The membrane was dissolved in a medium, and the viral load was measured using quantitative real-time reverse transcriptase-polymerase chain reaction and a plaque assay. The approximate viral recovery rate of this system was 10% in simulation experiments to collect and quantify the viral particles aerosolized by a nebulizer. Using this system, cough samples were collected from 56 influenza A patients. The total viral detection rate was 41% (23/56), and the viral loads varied significantly (from
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- 2014
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28. A new methodology for studying dynamics of aerosol particles in sneeze and cough using a digital high-vision, high-speed video system and vector analyses.
- Author
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Hidekazu Nishimura, Soichiro Sakata, and Akikazu Kaga
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Medicine ,Science - Abstract
Microbial pathogens of respiratory infectious diseases are often transmitted through particles in sneeze and cough. Therefore, understanding the particle movement is important for infection control. Images of a sneeze induced by nasal cavity stimulation by healthy adult volunteers, were taken by a digital high-vision, high-speed video system equipped with a computer system and treated as a research model. The obtained images were enhanced electronically, converted to digital images every 1/300 s, and subjected to vector analysis of the bioparticles contained in the whole sneeze cloud using automatic image processing software. The initial velocity of the particles or their clusters in the sneeze was greater than 6 m/s, but decreased as the particles moved forward; the momentums of the particles seemed to be lost by 0.15-0.20 s and started a diffusion movement. An approximate equation of a function of elapsed time for their velocity was obtained from the vector analysis to represent the dynamics of the front-line particles. This methodology was also applied for a cough. Microclouds contained in a smoke exhaled with a voluntary cough by a volunteer after smoking one breath of cigarette, were traced as the visible, aerodynamic surrogates for invisible bioparticles of cough. The smoke cough microclouds had an initial velocity greater than 5 m/s. The fastest microclouds were located at the forefront of cloud mass that moving forward; however, their velocity clearly decreased after 0.05 s and they began to diffuse in the environmental airflow. The maximum direct reaches of the particles and microclouds driven by sneezing and coughing unaffected by environmental airflows were estimated by calculations using the obtained equations to be about 84 cm and 30 cm from the mouth, respectively, both achieved in about 0.2 s, suggesting that data relating to the dynamics of sneeze and cough became available by calculation.
- Published
- 2013
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29. Analyses of Evolutionary Characteristics of the Hemagglutinin-Esterase Gene of Influenza C Virus during a Period of 68 Years Reveals Evolutionary Patterns Different from Influenza A and B Viruses
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Yuki Furuse, Yoko Matsuzaki, Hidekazu Nishimura, and Hitoshi Oshitani
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influenza C virus ,evolution ,phylogenetics ,Microbiology ,QR1-502 - Abstract
Infections with the influenza C virus causing respiratory symptoms are common, particularly among children. Since isolation and detection of the virus are rarely performed, compared with influenza A and B viruses, the small number of available sequences of the virus makes it difficult to analyze its evolutionary dynamics. Recently, we reported the full genome sequence of 102 strains of the virus. Here, we exploited the data to elucidate the evolutionary characteristics and phylodynamics of the virus compared with influenza A and B viruses. Along with our data, we obtained public sequence data of the hemagglutinin-esterase gene of the virus; the dataset consists of 218 unique sequences of the virus collected from 14 countries between 1947 and 2014. Informatics analyses revealed that (1) multiple lineages have been circulating globally; (2) there have been weak and infrequent selective bottlenecks; (3) the evolutionary rate is low because of weak positive selection and a low capability to induce mutations; and (4) there is no significant positive selection although a few mutations affecting its antigenicity have been induced. The unique evolutionary dynamics of the influenza C virus must be shaped by multiple factors, including virological, immunological, and epidemiological characteristics.
- Published
- 2016
- Full Text
- View/download PDF
30. Gradual Increase of High Mobility Group Protein B1 in the Lungs after the Onset of Acute Exacerbation of Idiopathic Pulmonary Fibrosis
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Masahito Ebina, Hiroyuki Taniguchi, Taku Miyasho, Shingo Yamada, Naoko Shibata, Hiromitsu Ohta, Shu Hisata, Shinya Ohkouchi, Tsutomu Tamada, Hidekazu Nishimura, Akitoshi Ishizaka, Ikuro Maruyama, Yoshinori Okada, Kondo Takashi, and Toshihiro Nukiwa
- Subjects
Diseases of the respiratory system ,RC705-779 - Abstract
The pathogenesis of acute exacerbation of idiopathic pulmonary fibrosis (IPF) remains to be elucidated. To evaluate the roles of inflammatory mediators in acute exacerbation, the concentrations of high mobility group protein B1 (HMGB1), a chief mediator of acute lung injury, and 18 inflammatory cytokines were measured in the bronchoalveolar lavage fluid, serially sampled from seven IPF patients after the onset of acute exacerbation. HMGB1 gradually increased in the alveolar fluid after the onset of acute exacerbation, in positive correlation with monocytes chemotactic protein-1 (MCP-1), a potent fibrogenic mediator. In the lung tissues of eight IPF patients autopsied after acute exacerbation, intense cytoplasmic staining for HMGB1 was observed in the alveolar epithelial cells in alveolar capillary augmented lesions, where the capillary endothelial cells remarkably reduced the expression of thrombomodulin, an intrinsic antagonist of HMGB1. These results suggest pathogenic roles for HMGB1 and MCP-1 in the late phase of acute exacerbation of IPF.
- Published
- 2011
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- View/download PDF
31. Rapid Genome Sequencing of RNA Viruses
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Tetsuya Mizutani, Daiji Endoh, Michiko Okamoto, Kazuya Shirato, Hiroyuki Shimizu, Minetaro Arita, Shuetsu Fukushi, Masayuki Saijo, Chang Kweng Lim, Mikako Ito, Reiko Nerome, Tomohiko Takasaki, Koji Ishii, Tetsuro Suzuki, Ichiro Kurane, Shigeru Morikawa, and Hidekazu Nishimura
- Subjects
Emerging infectious virus ,SARS-CoV ,West Nile virus ,rapid determination system ,whole genome amplification ,direct sequencing ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We developed a system for rapid determination of viral RNA sequences whereby genomic sequence is obtained from cultured virus isolates without subcloning into plasmid vectors. This method affords new opportunities to address the challenges of unknown or untypeable emerging viruses.
- Published
- 2007
- Full Text
- View/download PDF
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