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Abstract Background The placenta, as a unique exchange organ between mother and fetus, is essential for successful human pregnancy and fetal health. Preeclampsia (PE) caused by placental dysfunction contributes to both maternal and infant morbidity and mortality. Accurate identification of PE patients plays a vital role in the formulation of treatment plans. However, the traditional clinical methods of PE have a high misdiagnosis rate. Results Here, we first designed a computational biology method that used single-cell transcriptome (scRNA-seq) of healthy pregnancy (38 wk) and early-onset PE (28–32 wk) to identify pathological cell subpopulations and predict PE risk. Based on machine learning methods and feature selection techniques, we observed that the Tuning ReliefF (TURF) score hybrid with XGBoost (TURF_XGB) achieved optimal performance, with 92.61% accuracy and 92.46% recall for classifying nine cell subpopulations of healthy placentas. Biological landscapes of placenta heterogeneity could be mapped by the 110 marker genes screened by TURF_XGB, which revealed the superiority of the TURF feature mining. Moreover, we processed the PE dataset with LASSO to obtain 497 biomarkers. Integration analysis of the above two gene sets revealed that dendritic cells were closely associated with early-onset PE, and C1QB and C1QC might drive preeclampsia by mediating inflammation. In addition, an ensemble model-based risk stratification card was developed to classify preeclampsia patients, and its area under the receiver operating characteristic curve (AUC) could reach 0.99. For broader accessibility, we designed an accessible online web server ( http://bioinfor.imu.edu.cn/placenta ). Conclusion Single-cell transcriptome-based preeclampsia risk assessment using an ensemble machine learning framework is a valuable asset for clinical decision-making. C1QB and C1QC may be involved in the development and progression of early-onset PE by affecting the complement and coagulation cascades pathway that mediate inflammation, which has important implications for better understanding the pathogenesis of PE.

Abstract To compare the survival benefit between preoperative and postoperative radiotherapy for stage I–III non-inflammatory breast cancer patients, we conducted a retrospective cohort study using surveillance, epidemiology and end results databases. Our study recruited patients who had been diagnosed with stage I–III breast cancer and underwent surgery and radiotherapy. The overall survival was calculated by Kaplan–Meier method. Cox risk model was used to determine the impact of radiotherapy according to stage, molecular subtype and other risk factors. Propensity score matching was used to balance measurable confounding factors. Of all the 411,279 enrolled patients varying from 1975 to 2016, 1712 patients received preoperative radiotherapy, and 409,567 patients received postoperative radiotherapy. Compared with the postoperative radiotherapy group, the preoperative radiotherapy group showed significantly higher risks of overall mortality and breast cancer-specific mortality. Survival differences in treatment sequences were correlated with stage, molecular subtypes and other risk factors. According to the results of this study, preoperative radiotherapy did not show a survival advantage, and postoperative radiotherapy is still the primary treatment. However, preoperative radiotherapy also has some theoretical advantages, such as phase reduction and recurrence reduction. Therefore, it is still worthy of further exploration.

Introduction: Outer membrane proteins are crucial in maintaining the structural stability and permeability of the outer membrane. Outer membrane proteins exhibit several functions such as antigenicity and strong immunogenicity, which have potential applications in clinical diagnosis and disease prevention. However, wet experiments for studying OMPs are time and capital-intensive, thereby necessitating the use of computational methods for their identification.Methods: In this study, we developed a computational model to predict outer membrane proteins. The non-redundant dataset consists of a positive set of 208 outer membrane proteins and a negative set of 876 non-outer membrane proteins. In this study, we employed the pseudo amino acid composition method to extract feature vectors and subsequently utilized the support vector machine for prediction.Results and Discussion: In the Jackknife cross-validation, the overall accuracy and the area under receiver operating characteristic curve were observed to be 93.19% and 0.966, respectively. These results demonstrate that our model can produce accurate predictions, and could serve as a valuable guide for experimental research on outer membrane proteins.

Article Highlights A multi-objective optimization model for aircraft landing within a predetermined time window is proposed. The first come first serve (FCFS) approach and simulated annealing approach are applied to solve multi-objective optimization of aircraft landing problem. To balance the benefit of different stakeholders, the expert evaluation method is applied to select the best result.

Introduction: Apoptosis proteins play an important role in the process of cell apoptosis, which makes the rate of cell proliferation and death reach a relative balance. The function of apoptosis protein is closely related to its subcellular location, it is of great significance to study the subcellular locations of apoptosis proteins. Many efforts in bioinformatics research have been aimed at predicting their subcellular location. However, the subcellular localization of apoptotic proteins needs to be carefully studied.Methods: In this paper, based on amphiphilic pseudo amino acid composition and support vector machine algorithm, a new method was proposed for the prediction of apoptosis proteins\x{2019} subcellular location.Results and Discussion: The method achieved good performance on three data sets. The Jackknife test accuracy of the three data sets reached 90.5%, 93.9% and 84.0%, respectively. Compared with previous methods, the prediction accuracies of APACC_SVM were improved.

The development of civil aviation has led to flight operations generating massive datasets. Derived from Automatic Dependent Surveillance-Broadcast technology, an eigengap-based automatic hierarchical clustering algorithm is proposed, aiming to overcome the human intervention requirement of hierarchical clustering to determine the number of track clusters in the terminal area. First, the trajectory pair similarity matrix is calculated based on the Euclidean distance and an adaptive scale parameter. Second, the Laplace transformation is applied on the similarity matrix and the eigenvalues are obtained in order to determine the number of clusters. Finally, the hierarchical clustering algorithm divides the terminal area trajectory into several sub-categories. Taking a terminal approach trajectory as an example, simulation analysis is performed, with results revealing that the algorithm divides 404 north-south-oriented aircraft flight trajectories into 2 and 3 categories. Furthermore, the new-index is used to evaluate the clustering results, demonstrating its effectiveness is better than the automatic k-means algorithm. Our study provides support for reliability analysis of air traffic network in the terminal area.

BackgroundConcurrent chemoradiotherapy (CCRT) is the standard treatment for nonsurgical esophageal cancer (EC). However, esophageal cancer patients receiving CCRT alone are still unsatisfactory in terms of local control and overall survival (OS) benefit. Clinicians generally add consolidation chemotherapy (CCT) after CCRT. It remains controversial whether CCT following CCRT is beneficial for esophageal cancer. We, therefore, undertook a meta-analysis to assess the need for CCT in inoperable esophageal cancer.Materials and MethodsWe combed PubMed, Embase, Cochrane Library, Web of Science, and CNKI for relevant published articles up to July 2020 that compared CCRT plus CCT to CCRT alone for patients with nonsurgical EC. Our primary endpoint was OS and progression-free survival (PFS), and the secondary endpoint was treatment toxicity. We analyzed the hazard ratio (HR) to estimate the time-to-event data and the odds ratio (OR) to compare the treatment-related effect. To assess heterogeneity, we performed the I2 test and examined publication bias using funnel plots analysis.ResultsThe 11 retrospective studies involved 2008 patients. Of these 2008 patients, 1018 received CCRT plus CCT, and 990 received CCRT. Compared to CCRT alone, CCT after CCRT did not improve disease control rate (DCR) (OR 1.66; 95% CI 0.53–5.15, p=0.384) and objective response rate (ORR) (OR 1.44; 95% CI 0.62–3.35, p=0.393). However, OS (HR 0.72; 95% CI 0.59–0.86, p < 0.001) and PFS (HR 0.61; 95% CI 0.44–0.84, p=0.003) did increase. Our results show that CCT plus CCRT had a clear survival advantage over CCRT alone. The risk of treatment toxicity did not increase for EC patients who received CCT.ConclusionCCT after CCRT significantly increases OS and PFS in patients with nonsurgical EC and could provide them remarkable survival benefits. The results provide an evidence-based framework for the use of CCT after CCRT.

Background To determine the diagnostic accuracy of preoperative T/N stage using MRI in lower and middle rectal cancer patients and the impacts on clinical decision-making. Patients and methods There were 354 patients recruited from May 2017 to February 2019. MRI was performed within 2 weeks before surgery. Histopathologic results were evaluated for the postoperative T/N stage and MRI diagnostic accuracy was assessed based on the postoperative histopathologic results. Accuracy, sensitivity, specificity, positive predictive value, negative predictive value, and Kappa values were used to evaluate MRI diagnostic accuracy and analysis consistency compared with postoperative histopathologic staging. Results Overall MRI diagnostic accuracy was 78.2% and 56.8% for T1–4 and N0–2 staging. The Kappa values were 0.625 and 0.323 for T1–4 and N0–2 staging, respectively. After combination, MRI diagnostic accuracy was 85% and 69.5% for T and N staging. The Kappa values were 0.693 and 0.4 for T and N staging. The diagnostic accuracy of MRI for treatment decision-making was 79.1%. Conclusion MRI enables a highly accurate preoperative assessment of T stage but only a fairly accurate preoperative assessment of the N stage for rectal cancer with surgery. The diagnostic accuracy of MRI for treatment decision-making is promising.

Understanding the chaos of air traffic flow is significant to the achievement of advanced air traffic management, and trajectory data are the basic material for studying the chaotic characteristics. However, at present, there are two main obstacles to this task, namely, large amounts of noise in the measured data and the tedium of existing data processing methods. This paper improves the incorrect trajectory processing method based on ADS-B trajectory data and proposes a method by which to quickly extract the traffic flow through a certain waypoint. Currently, the commonly used theoretical analysis tools for nonlinear complex systems include the classical nonlinear dynamics analysis method and the newly developed complex network-based analysis method. The latter is currently in an exploratory stage because it has just been introduced into the study of air traffic flow. From these two perspectives, the chaotic characteristics of air traffic flow are studied in the present work. From the perspective of nonlinear dynamics, the improved C-C method is used to calculate the reliability parameters, namely, the time delay τ and embedding dimension m, of phase-space reconstruction, and the maximum Lyapunov index is calculated by using the small data volume method to prove the existence of chaos in the system. From the perspective of complex networks, the construction of a visibility graph and horizontal visibility graph is used to prove the existence of chaos in the system, and the goodness-of-fit parameters of the degree distributions of two fitting methods under different time scales are evaluated, which provides support for the air traffic flow theory.

To better understand the mechanism of air traffic delay propagation at the system level, an efficient modeling approach based on the epidemic model for delay propagation in airport networks is developed. The normal release rate (NRR) and average flight delay (AFD) are considered to measure airport delay. Through fluctuation analysis of the average flight delay based on complex network theory, we find that the long-term dynamic of airport delay is dominated by the propagation factor (PF), which reveals that the long-term dynamic of airport delay should be studied from the perspective of propagation. An integrated airport-based Susceptible-Infected-Recovered-Susceptible (ASIRS) epidemic model for air traffic delay propagation is developed from the network-level perspective, to create a simulator for reproducing the delay propagation in airport networks. The evolution of airport delay propagation is obtained by analyzing the phase trajectory of the model. The simulator is run using the empirical data of China. The simulation results show that the model can reproduce the evolution of the delay propagation in the long term and its accuracy for predicting the number of delayed airports in the short term is much higher than the probabilistic prediction method. The model can thus help managers as a tool to effectively predict the temporal and spatial evolution of air traffic delay.

Automated modulation classification plays a very important part in cognitive radio networks. Deep learning is also a powerful tool that we could not overlook its potential in addressing signal modulation recognition problem. In our last work, we propose a new data conversion algorithm in order to gain a better classification accuracy of communication signal modulation, but we still believe that the convolution neural network (CNN) can work better. However, its application to signal modulation recognition is often hampered by insufficient data and overfitting. Here, we propose a smart approach to programmatic data augmentation method by using the auxiliary classifier generative adversarial networks (ACGANs). The famous CNN model, AlexNet, has been utilized to be the classifier and ACGAN to be the generator, which will enlarge our data set. In order to alleviate the common issues in the traditional generative adversarial nets training, such as discriminator overfitting, generator disconverge, and mode collapse, we apply several training tricks in our training. With the result on original data set as our baseline, we will evaluate our result on enlarged data set to validate the ACGAN’s performance. The result shows that we can gain 0.1~6% increase in the classification accuracy in the ACGAN-based data set.

iWith the rapid development and the increasing security threats of D2D communication, the D2D communication security has become more and more important. Device recognition is the foundation of communication security. Traditional device authentication is the cryptographic mechanism and the security protocol that are not enough for the new security threat. RF fingerprint of wireless device has physical characteristics, which is difficult to clone. Therefore, it can be used for D2D device recognition. In this paper, a recognition algorithm of D2D device based on RF fingerprint is proposed. First, Hilbert transform and principal component analysis is used to generate the RF fingerprint of D2D device. Second, support vector machine (SVM) is introduced and CV-SVM is used as the classifier. Finally, simulation results show that the recognition rate is more than 90% under SNR = 5 dB, which proves that the proposed method is effective for D2D device recognition. Therefore, it can be used as the trust management of D2D communication.

Abstract Background Endometrial cancer (UCEC) is a complex malignant tumor characterized by both genetic level and clinical trial. Patients with UCEC exhibit the similar clinical features, however, they have distinct outcomes due to molecular heterogeneity. The aim of this study was to access the prognostic value of long non-coding RNAs (lncRNAs) in UCEC patients and to identify potential lncRNA signature for predicting patients’ survival and improving patient-tailored treatment. Methods We performed a comprehensive genome-wide analysis of lncRNA expression profiles and clinical data in a large cohort of 301 UCEC patients. UCEC patients were randomly divided into the discovery cohort (n = 150) and validation cohort (n = 151). A novel lncRNA-focus expression signature was identified in the discovery cohort, and independently accessed in the validation cohort. Additionally, the lncRNA signature was evaluated by multivariable Cox regression and stratification analysis as well as functional enrichment analysis. Results We detected a novel lncRNA-focus expression signature (LFES) consisting of 11 lncRNAs that were associated with survival based on risk scoring strategy in UCEC. The risk score based on the LFES was able to separate patients of discovery cohort into high-risk and low-risk groups with significantly different overall survival and progression-free survival, and has been successfully confirmed in the validation cohort. Furthermore, the LFES is an independent prognostic predictor of survival and demonstrates superior prognostic performance compared with the clinical covariates for predicting 5-year survival (AUC = 0.887). Functional analysis has linked the expression of prognostic lncRNAs to well-known tumor suppressor or ontogenetic pathways in endometrial carcinogenesis. Conclusions Our study revealed a novel 11-lncRNA signature to predict survival of UCEC patient. This lncRNA signature may be a valuable and alternative marker for risk evaluation to aid patient-tailored treatment and improve the outcome of patients with UCEC.

To scientifically evaluate the reliability of air traffic networks, a definition of air traffic network reliability is proposed in this paper. Calculation models of the connectivity reliability, travel-time reliability, and capacity reliability of the air traffic network are constructed based on collected historical data, considering the current status and the predicted future evolution trends. Considering the randomness and fuzziness of factors affecting reliability, a comprehensive evaluation model of air traffic networks based on the uncertainty transformation model is established. Finally, the reliability of the US air traffic network is analyzed based on data published by the Transportation Statistics Bureau of the US Department of Transportation. The results show that the connectivity reliability is 0.4073, the capacity reliability is 0.8300, the travel-time reliability is 0.9180, and the overall reliability evaluated is “relatively reliable”. This indicates that although the US structural reliability is relatively low, the US air traffic management is very efficient, and the overall reliability is strong. The reliability in nonpeak hours is much higher than that in peak hours. The method can identify air traffic network reliability efficiently. The main factors affecting reliability can be found in the calculation process, and are beneficial for air traffic planning and management. The empirical analysis also reflects that the evaluation model based on the uncertainty transformation model can transform the quantitative data of network structure and traffic function into the qualitative language of reliability.

In this paper, information entropy and ensemble learning based signal recognition theory and algorithms have been proposed. We have extracted 16 kinds of entropy features out of 9 types of modulated signals. The types of information entropy used are numerous, including Rényi entropy and energy entropy based on S Transform and Generalized S Transform. We have used three feature selection algorithms, including sequence forward selection (SFS), sequence forward floating selection (SFFS) and RELIEF-F to select the optimal feature subset from 16 entropy features. We use five classifiers, including k-nearest neighbor (KNN), support vector machine (SVM), Adaboost, Gradient Boosting Decision Tree (GBDT) and eXtreme Gradient Boosting (XGBoost) to classify the original feature set and the feature subsets selected by different feature selection algorithms. The simulation results show that the feature subsets selected by SFS and SFFS algorithms are the best, with a 48% increase in recognition rate over the original feature set when using KNN classifier and a 34% increase when using SVM classifier. For the other three classifiers, the original feature set can achieve the best recognition performance. The XGBoost classifier has the best recognition performance, the overall recognition rate is 97.74% and the recognition rate can reach 82% when the signal to noise ratio (SNR) is −10 dB.