71 results on '"Blanchard JW"'
Search Results
2. Robust parahydrogen-induced polarization at high concentrations.
- Author
-
Dagys L, Korzeczek MC, Parker AJ, Eills J, Blanchard JW, Bengs C, Levitt MH, Knecht S, Schwartz I, and Plenio MB
- Abstract
Parahydrogen-induced polarization (PHIP) is a potent technique for generating target molecules with high nuclear spin polarization. The PHIP process involves a chemical reaction between parahydrogen and a target molecule, followed by the transformation of nuclear singlet spin order into magnetization of a designated target nucleus through magnetic field manipulations. Although the singlet-to-magnetization polarization transfer process works effectively at moderate concentrations, it is observed to become much less efficient at high molar polarization, defined as the product of polarization and concentration. This strong dependence on the molar polarization is attributed to interference due to the field produced by the sample magnetization during polarization transfer, which leads to complex dynamics and can severely affect the scalability of the technique. We address this challenge with a pulse sequence that suppresses the influence of the distant dipolar field, while simultaneously achieving singlet-to-magnetization polarization transfer to the desired target spins, free from restrictions on the molar polarization.
- Published
- 2024
- Full Text
- View/download PDF
3. Genetically Encoded and Modular SubCellular Organelle Probes (GEM-SCOPe) reveal lysosomal and mitochondrial dysfunction driven by PRKN knockout.
- Author
-
Goldman C, Kareva T, Sarrafha L, Schuldt BR, Sahasrabudhe A, Ahfeldt T, and Blanchard JW
- Abstract
Cellular processes including lysosomal and mitochondrial dysfunction are implicated in the development of many diseases. Quantitative visualization of mitochondria and lysosoesl is crucial to understand how these organelles are dysregulated during disease. To address a gap in live-imaging tools, we developed GEM-SCOPe (Genetically Encoded and Modular SubCellular Organelle Probes), a modular toolbox of fluorescent markers designed to inform on localization, distribution, turnover, and oxidative stress of specific organelles. We expressed GEM-SCOPe in differentiated astrocytes and neurons from a human pluripotent stem cell PRKN- knockout model of Parkinson's disease and identified disease-associated changes in proliferation, lysosomal distribution, mitochondrial transport and turnover, and reactive oxygen species. We demonstrate GEM-SCOPe is a powerful panel that provide critical insight into the subcellular mechanisms underlying Parkinson's disease in human cells. GEM-SCOPe can be expanded upon and applied to a diversity of cellular models to glean an understanding of the mechanisms that promote disease onset and progression.
- Published
- 2024
- Full Text
- View/download PDF
4. Engineered 3D Immuno-Glial-Neurovascular Human miBrain Model.
- Author
-
Stanton AE, Bubnys A, Agbas E, James B, Park DS, Jiang A, Pinals RL, Liu L, Truong N, Loon A, Staab C, Cerit O, Wen HL, Kellis M, Blanchard JW, Langer R, and Tsai LH
- Abstract
Patient-specific, human-based cellular models integrating a biomimetic blood-brain barrier (BBB), immune, and myelinated neuron components are critically needed to enable accelerated, translationally relevant discovery of neurological disease mechanisms and interventions. By engineering a novel brain-mimicking 3D hydrogel and co-culturing all six major brain cell types derived from patient iPSCs, we have constructed, characterized, and utilized a multicellular integrated brain (miBrain) immuno-glial-neurovascular model with in vivo- like hallmarks inclusive of neuronal activity, functional connectivity, barrier function, myelin-producing oligodendrocyte engagement with neurons, multicellular interactions, and transcriptomic profiles. We implemented the model to study Alzheimer's Disease pathologies associated with APOE4 genetic risk. APOE4 miBrains differentially exhibit amyloid aggregation, tau phosphorylation, and astrocytic GFAP. Unlike the co-emergent fate specification of glia and neurons in organoids, miBrains integrate independently differentiated cell types, a feature we harnessed to identify that APOE4 in astrocytes promotes neuronal tau pathogenesis and dysregulation through crosstalk with microglia.
- Published
- 2024
- Full Text
- View/download PDF
5. Zero-field J-spectroscopy of quadrupolar nuclei.
- Author
-
Picazo-Frutos R, Sheberstov KF, Blanchard JW, Van Dyke E, Reh M, Sjoelander T, Pines A, Budker D, and Barskiy DA
- Abstract
Zero- to ultralow-field nuclear magnetic resonance (ZULF NMR) allows molecular structure elucidation via measurement of electron-mediated spin-spin J-couplings. This study examines zero-field J-spectra from molecules with quadrupolar nuclei, exemplified by solutions of various isotopologues of ammonium cations. The spectra reveal differences between various isotopologues upon extracting precise J-coupling values from pulse-acquire measurements. A primary isotope effect, △ J = γ 14 N / γ 15 N J 15 N H - J 14 N H ≈ - 58 mHz, is deduced by analysis of the proton-nitrogen J-coupling ratios. This study points toward further experiments with symmetric cations containing quadrupolar nuclei, promising applications in biomedicine, energy storage, and benchmarking quantum chemistry calculations., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
6. Editorial: Understanding human biology with iPSC derived cell types in the Era of CRISPR technology.
- Author
-
Li H, Przybyla L, and Blanchard JW
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
7. Enzymatic Reactions Observed with Zero- and Low-Field Nuclear Magnetic Resonance.
- Author
-
Eills J, Picazo-Frutos R, Bondar O, Cavallari E, Carrera C, Barker SJ, Utz M, Herrero-Gómez A, Marco-Rius I, Tayler MCD, Aime S, Reineri F, Budker D, and Blanchard JW
- Subjects
- Magnetic Resonance Spectroscopy methods, Hydrogenation, Fumarates, Magnetic Resonance Imaging methods, Pyruvic Acid metabolism
- Abstract
We demonstrate that enzyme-catalyzed reactions can be observed in zero- and low-field NMR experiments by combining recent advances in parahydrogen-based hyperpolarization methods with state-of-the-art magnetometry. Specifically, we investigated two model biological processes: the conversion of fumarate into malate, which is used in vivo as a marker of cell necrosis, and the conversion of pyruvate into lactate, which is the most widely studied metabolic process in hyperpolarization-enhanced imaging. In addition to this, we constructed a microfluidic zero-field NMR setup to perform experiments on microliter-scale samples of [1-
13 C]fumarate in a lab-on-a-chip device. Zero- to ultralow-field (ZULF) NMR has two key advantages over high-field NMR: the signals can pass through conductive materials (e.g., metals), and line broadening from sample heterogeneity is negligible. To date, the use of ZULF NMR for process monitoring has been limited to studying hydrogenation reactions. In this work, we demonstrate this emerging analytical technique for more general reaction monitoring and compare zero- vs low-field detection.- Published
- 2023
- Full Text
- View/download PDF
8. Solution-State 2D NMR Spectroscopy of Mixtures HyperpolarizedUsing Optically Polarized Crystals.
- Author
-
Parker AJ, Dey A, Usman Qureshi M, Steiner JM, Blanchard JW, Scheuer J, Tomek N, Knecht S, Josten F, Müller C, Hautle P, Schwartz I, Giraudeau P, Eichhorn TR, and Dumez JN
- Abstract
The HYPNOESYS method (Hyperpolarized NOE System), which relies on the dissolution of optically polarized crystals, has recently emerged as a promising approach to enhance the sensitivity of NMR spectroscopy in the solution state. However, HYPNOESYS is a single-shot method that is not generally compatible with multidimensional NMR. Here we show that 2D NMR spectra can be obtained from HYPNOESYS-polarized samples, using single-scan acquisition methods. The approach is illustrated with a mixture of terpene molecules and a benchtop NMR spectrometer, paving the way to a sensitive, information-rich and affordable analytical method., (© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)
- Published
- 2023
- Full Text
- View/download PDF
9. Reconstruction of the Blood-Brain Barrier In Vitro to Model and Therapeutically Target Neurological Disease.
- Author
-
Goldman C, Suhy N, Schwarz JE, Sartori ER, Rooklin RB, Schuldt BR, Mesentier-Louro LA, and Blanchard JW
- Subjects
- Humans, Blood-Brain Barrier metabolism, Endothelial Cells metabolism, Brain metabolism, Central Nervous System metabolism, Cerebral Amyloid Angiopathy, Alzheimer Disease metabolism
- Abstract
The blood-brain barrier (BBB) is a key physiological component of the central nervous system (CNS), maintaining nutrients, clearing waste, and protecting the brain from pathogens. The inherent barrier properties of the BBB pose a challenge for therapeutic drug delivery into the CNS to treat neurological diseases. Impaired BBB function has been related to neurological disease. Cerebral amyloid angiopathy (CAA), the deposition of amyloid in the cerebral vasculature leading to a compromised BBB, is a co-morbidity in most cases of Alzheimer's disease (AD), suggesting that BBB dysfunction or breakdown may be involved in neurodegeneration. Due to limited access to human BBB tissue, the mechanisms that contribute to proper BBB function and BBB degeneration remain unknown. To address these limitations, we have developed a human pluripotent stem cell-derived BBB (iBBB) by incorporating endothelial cells, pericytes, and astrocytes in a 3D matrix. The iBBB self-assembles to recapitulate the anatomy and cellular interactions present in the BBB. Seeding iBBBs with amyloid captures key aspects of CAA. Additionally, the iBBB offers a flexible platform to modulate genetic and environmental factors implicated in cerebrovascular disease and neurodegeneration, to investigate how genetics and lifestyle affect disease risk. Finally, the iBBB can be used for drug screening and medicinal chemistry studies to optimize therapeutic delivery to the CNS. In this protocol, we describe the differentiation of the three types of cells (endothelial cells, pericytes, and astrocytes) arising from human pluripotent stem cells, how to assemble the differentiated cells into the iBBB, and how to model CAA in vitro using exogenous amyloid. This model overcomes the challenge of studying live human brain tissue with a system that has both biological fidelity and experimental flexibility, and enables the interrogation of the human BBB and its role in neurodegeneration.
- Published
- 2023
- Full Text
- View/download PDF
10. Long-Lived, Transportable Reservoir of Nuclear Polarization Used to Strongly Enhance Solution-State NMR Signals.
- Author
-
Steiner JM, Quan Y, Eichhorn TR, Parker AJ, Qureshi MU, Scheuer J, Müller C, Blanchard JW, Schwartz I, and Hautle P
- Abstract
There is a fundamental issue with the use of dynamic nuclear polarization (DNP) to enhance nuclear spin polarization: the same polarizing agent (PA) needed for DNP is also responsible for shortening the lifetime of the hyperpolarization. As a result, long-term storage and transport of hyperpolarized samples is severely restricted and the apparatus for DNP is necessarily located near or integrated with the apparatus using the hyperpolarized spins. In this paper, we demonstrate that naphthalene single crystals can serve as a long-lived reservoir of proton polarization that can be exploited to enhance signals in benchtop and high-field NMR of target molecules in solution at a site 300 km away by a factor of several thousand. The naphthalene protons are polarized using short-lived optically excited triplet states of pentacene instead of stable radicals. In the absence of optical excitation, the electron spins remain in a singlet ground state, eliminating the major pathway of nuclear spin-lattice relaxation. The polarization decays with a time constant of about 50 h at 80 K and 0.5 T or above 800 h at 5 K and 20 mT. A module based on a Halbach array yielding a field of 0.75 T and a conventional cryogenic dry shipper, operating at liquid nitrogen temperature, allows storage and long distance transport of the polarization to a remote laboratory, where the polarization of the crystal is transferred after dissolution to a target molecule of choice by intermolecular cross-relaxation. The procedure has been executed repeatedly and has proven to be reliable and robust.
- Published
- 2023
- Full Text
- View/download PDF
11. Parahydrogen-Polarized Fumarate for Preclinical in Vivo Metabolic Magnetic Resonance Imaging.
- Author
-
Gierse M, Nagel L, Keim M, Lucas S, Speidel T, Lobmeyer T, Winter G, Josten F, Karaali S, Fellermann M, Scheuer J, Müller C, van Heijster F, Skinner J, Löffler J, Parker A, Handwerker J, Marshall A, Salhov A, El-Kassem B, Vassiliou C, Blanchard JW, Picazo-Frutos R, Eills J, Barth H, Jelezko F, Rasche V, Schilling F, Schwartz I, and Knecht S
- Subjects
- Mice, Animals, Magnetic Resonance Spectroscopy, Hydrogenation, Contrast Media, Fumarates, Magnetic Resonance Imaging methods
- Abstract
We present a versatile method for the preparation of hyperpolarized [1-
13 C]fumarate as a contrast agent for preclinical in vivo MRI, using parahydrogen-induced polarization (PHIP). To benchmark this process, we compared a prototype PHIP polarizer to a state-of-the-art dissolution dynamic nuclear polarization (d-DNP) system. We found comparable polarization, volume, and concentration levels of the prepared solutions, while the preparation effort is significantly lower for the PHIP process, which can provide a preclinical dose every 10 min, opposed to around 90 min for d-DNP systems. With our approach, a 100 mM [1-13 C]-fumarate solution of volumes up to 3 mL with 13-20%13 C-hyperpolarization after purification can be produced. The purified solution has a physiological pH, while the catalyst, the reaction side products, and the precursor material concentrations are reduced to nontoxic levels, as confirmed in a panel of cytotoxicity studies. The in vivo usage of the hyperpolarized fumarate as a perfusion agent in healthy mice and the metabolic conversion of fumarate to malate in tumor-bearing mice developing regions with necrotic cell death is demonstrated. Furthermore, we present a one-step synthesis to produce the13 C-labeled precursor for the hydrogenation reaction with high yield, starting from13 CO2 as a cost-effective source for13 C-labeled compounds.- Published
- 2023
- Full Text
- View/download PDF
12. Radio-Frequency Sweeps at Microtesla Fields for Parahydrogen-Induced Polarization of Biomolecules.
- Author
-
Marshall A, Salhov A, Gierse M, Müller C, Keim M, Lucas S, Parker A, Scheuer J, Vassiliou C, Neumann P, Jelezko F, Retzker A, Blanchard JW, Schwartz I, and Knecht S
- Abstract
Magnetic resonance imaging of
13 C-labeled metabolites enhanced by parahydrogen-induced polarization (PHIP) enables real-time monitoring of processes within the body. We introduce a robust, easily implementable technique for transferring parahydrogen-derived singlet order into13 C magnetization using adiabatic radio frequency sweeps at microtesla fields. We experimentally demonstrate the applicability of this technique to several molecules, including some molecules relevant for metabolic imaging, where we show significant improvements in the achievable polarization, in some cases reaching above 60% nuclear spin polarization. Furthermore, we introduce a site-selective deuteration scheme, where deuterium is included in the coupling network of a pyruvate ester to enhance the efficiency of the polarization transfer. These improvements are enabled by the fact that the transfer protocol avoids relaxation induced by strongly coupled quadrupolar nuclei.- Published
- 2023
- Full Text
- View/download PDF
13. Zero- to Ultralow-Field Nuclear Magnetic Resonance Enhanced with Dissolution Dynamic Nuclear Polarization.
- Author
-
Picazo-Frutos R, Stern Q, Blanchard JW, Cala O, Ceillier M, Cousin SF, Eills J, Elliott SJ, Jannin S, and Budker D
- Subjects
- Solubility, Magnetic Resonance Spectroscopy methods, Magnetic Resonance Imaging methods
- Abstract
Zero- to ultralow-field nuclear magnetic resonance is a modality of magnetic resonance experiment which does not require strong superconducting magnets. Contrary to conventional high-field nuclear magnetic resonance, it has the advantage of allowing high-resolution detection of nuclear magnetism through metal as well as within heterogeneous media. To achieve high sensitivity, it is common to couple zero-field nuclear magnetic resonance with hyperpolarization techniques. To date, the most common technique is parahydrogen-induced polarization, which is only compatible with a small number of compounds. In this article, we establish dissolution dynamic nuclear polarization as a versatile method to enhance signals in zero-field nuclear magnetic resonance experiments on sample mixtures of [
13 C]sodium formate, [1-13 C]glycine, and [2-13 C]sodium acetate, and our technique is immediately extendable to a broad range of molecules with >1 s relaxation times. We find signal enhancements of up to 11,000 compared with thermal prepolarization in a 2 T permanent magnet. To increase the signal in future experiments, we investigate the relaxation effects of the TEMPOL radicals used for the hyperpolarization process at zero- and ultralow-fields.- Published
- 2023
- Full Text
- View/download PDF
14. Modeling the Blood-Brain Barrier Using Human-Induced Pluripotent Stem Cells.
- Author
-
Mesentier-Louro LA, Suhy N, Broekaart D, Bula M, Pereira AC, and Blanchard JW
- Subjects
- Humans, Endothelial Cells, Astrocytes, Brain, Blood-Brain Barrier, Induced Pluripotent Stem Cells
- Abstract
The blood-brain barrier (BBB) is a key physiological component of the brain, protecting the brain from peripheral processes and pathogens. The BBB is a dynamic structure that is heavily involved in cerebral blood flow, angiogenesis, and other neural functions. However, the BBB also creates a challenging barrier for the entry of therapeutics into the brain, blocking more than 98% of drugs from contact with the brain. Neurovascular comorbidities are common in several neurological diseases including Alzheimer's and Parkinson's Disease, suggesting that BBB dysfunction or break down likely has a causal role in neurodegeneration. However, the mechanisms by which the human BBB is formed, maintained, and degenerated in diseases remain largely unknown due to limited access to human BBB tissue. To address these limitations, we have developed an in vitro induced human BBB (iBBB) derived from pluripotent stem cells. The iBBB model can be used for discovery of disease mechanisms, drug targets, drug screening, and medicinal chemistry studies to optimize brain penetration of central nervous system therapeutics. In this chapter, we will explain the steps to differentiate the three cellular components (endothelial cells, pericytes, and astrocytes) from induced pluripotent stem cells, and how to assemble them into the iBBB., (© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2023
- Full Text
- View/download PDF
15. APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes.
- Author
-
Blanchard JW, Akay LA, Davila-Velderrain J, von Maydell D, Mathys H, Davidson SM, Effenberger A, Chen CY, Maner-Smith K, Hajjar I, Ortlund EA, Bula M, Agbas E, Ng A, Jiang X, Kahn M, Blanco-Duque C, Lavoie N, Liu L, Reyes R, Lin YT, Ko T, R'Bibo L, Ralvenius WT, Bennett DA, Cam HP, Kellis M, and Tsai LH
- Subjects
- Animals, Humans, Mice, Alzheimer Disease genetics, Alzheimer Disease metabolism, Alzheimer Disease pathology, Autopsy, Induced Pluripotent Stem Cells, Neurons metabolism, Neurons pathology, Heterozygote, Biological Transport, Homeostasis, Single-Cell Analysis, Memory, Aging genetics, Gene Expression Profiling, Myelin Sheath metabolism, Myelin Sheath pathology, Apolipoprotein E4 genetics, Apolipoprotein E4 metabolism, Brain metabolism, Brain pathology, Cholesterol metabolism, Oligodendroglia metabolism, Oligodendroglia pathology, Nerve Fibers, Myelinated metabolism, Nerve Fibers, Myelinated pathology
- Abstract
APOE4 is the strongest genetic risk factor for Alzheimer's disease
1-3 . However, the effects of APOE4 on the human brain are not fully understood, limiting opportunities to develop targeted therapeutics for individuals carrying APOE4 and other risk factors for Alzheimer's disease4-8 . Here, to gain more comprehensive insights into the impact of APOE4 on the human brain, we performed single-cell transcriptomics profiling of post-mortem human brains from APOE4 carriers compared with non-carriers. This revealed that APOE4 is associated with widespread gene expression changes across all cell types of the human brain. Consistent with the biological function of APOE2-6 , APOE4 significantly altered signalling pathways associated with cholesterol homeostasis and transport. Confirming these findings with histological and lipidomic analysis of the post-mortem human brain, induced pluripotent stem-cell-derived cells and targeted-replacement mice, we show that cholesterol is aberrantly deposited in oligodendrocytes-myelinating cells that are responsible for insulating and promoting the electrical activity of neurons. We show that altered cholesterol localization in the APOE4 brain coincides with reduced myelination. Pharmacologically facilitating cholesterol transport increases axonal myelination and improves learning and memory in APOE4 mice. We provide a single-cell atlas describing the transcriptional effects of APOE4 on the aging human brain and establish a functional link between APOE4, cholesterol, myelination and memory, offering therapeutic opportunities for Alzheimer's disease., (© 2022. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2022
- Full Text
- View/download PDF
16. Hyperpolarized Solution-State NMR Spectroscopy with Optically Polarized Crystals.
- Author
-
Eichhorn TR, Parker AJ, Josten F, Müller C, Scheuer J, Steiner JM, Gierse M, Handwerker J, Keim M, Lucas S, Qureshi MU, Marshall A, Salhov A, Quan Y, Binder J, Jahnke KD, Neumann P, Knecht S, Blanchard JW, Plenio MB, Jelezko F, Emsley L, Vassiliou CC, Hautle P, and Schwartz I
- Abstract
Nuclear spin hyperpolarization provides a promising route to overcome the challenges imposed by the limited sensitivity of nuclear magnetic resonance. Here we demonstrate that dissolution of spin-polarized pentacene-doped naphthalene crystals enables transfer of polarization to target molecules via intermolecular cross-relaxation at room temperature and moderate magnetic fields (1.45 T). This makes it possible to exploit the high spin polarization of optically polarized crystals, while mitigating the challenges of its transfer to external nuclei. With this method, we inject the highly polarized mixture into a benchtop NMR spectrometer and observe the polarization dynamics for target
1 H nuclei. Although the spectra are radiation damped due to the high naphthalene magnetization, we describe a procedure to process the data to obtain more conventional NMR spectra and extract the target nuclei polarization. With the entire process occurring on a time scale of 1 min, we observe NMR signals enhanced by factors between -200 and -1730 at 1.45 T for a range of small molecules.- Published
- 2022
- Full Text
- View/download PDF
17. Dissecting the complexities of Alzheimer disease with in vitro models of the human brain.
- Author
-
Blanchard JW, Victor MB, and Tsai LH
- Subjects
- Alzheimer Disease genetics, Alzheimer Disease physiopathology, Animals, Brain physiology, Brain physiopathology, Genetic Predisposition to Disease, Humans, Alzheimer Disease pathology, Brain pathology, Models, Anatomic, Models, Neurological
- Abstract
Alzheimer disease (AD) is the most prevalent type of dementia. It is marked by severe memory loss and cognitive decline, and currently has limited effective treatment options. Although individuals with AD have common neuropathological hallmarks, emerging data suggest that the disease has a complex polygenic aetiology, and more than 25 genetic loci have been linked to an elevated risk of AD and dementia. Nevertheless, our ability to decipher the cellular and molecular mechanisms that underlie genetic susceptibility to AD, and its progression and severity, remains limited. Here, we discuss ongoing efforts to leverage genomic data from patients using cellular reprogramming technologies to recapitulate complex brain systems and build in vitro discovery platforms. Much attention has already been given to methodologies to derive major brain cell types from pluripotent stem cells. We therefore focus on technologies that combine multiple cell types to recreate anatomical and physiological properties of human brain tissue in vitro. We discuss the advances in the field for modelling four domains that have come into view as key contributors to the pathogenesis of AD: the blood-brain barrier, myelination, neuroinflammation and neuronal circuits. We also highlight opportunities for the field to further interrogate the complex genetic and environmental factors of AD using in vitro models., (© 2021. Springer Nature Limited.)
- Published
- 2022
- Full Text
- View/download PDF
18. Stochastic fluctuations of bosonic dark matter.
- Author
-
Centers GP, Blanchard JW, Conrad J, Figueroa NL, Garcon A, Gramolin AV, Kimball DFJ, Lawson M, Pelssers B, Smiga JA, Sushkov AO, Wickenbrock A, Budker D, and Derevianko A
- Abstract
Numerous theories extending beyond the standard model of particle physics predict the existence of bosons that could constitute dark matter. In the standard halo model of galactic dark matter, the velocity distribution of the bosonic dark matter field defines a characteristic coherence time τ
c . Until recently, laboratory experiments searching for bosonic dark matter fields have been in the regime where the measurement time T significantly exceeds τc , so null results have been interpreted by assuming a bosonic field amplitude Φ0 fixed by the average local dark matter density. Here we show that experiments operating in the T ≪ τc regime do not sample the full distribution of bosonic dark matter field amplitudes and therefore it is incorrect to assume a fixed value of Φ0 when inferring constraints. Instead, in order to interpret laboratory measurements (even in the event of a discovery), it is necessary to account for the stochastic nature of such a virialized ultralight field. The constraints inferred from several previous null experiments searching for ultralight bosonic dark matter were overestimated by factors ranging from 3 to 10 depending on experimental details, model assumptions, and choice of inference framework., (© 2021. The Author(s).)- Published
- 2021
- Full Text
- View/download PDF
19. Towards large-scale steady-state enhanced nuclear magnetization with in situ detection.
- Author
-
Blanchard JW, Ripka B, Suslick BA, Gelevski D, Wu T, Münnemann K, Barskiy DA, and Budker D
- Subjects
- Catalysis, Magnetic Resonance Spectroscopy, Magnetic Resonance Imaging
- Abstract
Signal amplification by reversible exchange (SABRE) boosts NMR signals of various nuclei enabling new applications spanning from magnetic resonance imaging to analytical chemistry and fundamental physics. SABRE is especially well positioned for continuous generation of enhanced magnetization on a large scale; however, several challenges need to be addressed for accomplishing this goal. Specifically, SABRE requires (i) a specialized catalyst capable of reversible H
2 activation and (ii) physical transfer of the sample from the point of magnetization generation to the point of detection (e.g., a high-field or a benchtop nuclear magnetic resonance [NMR] spectrometer). Moreover, (iii) continuous parahydrogen bubbling accelerates solvent (e.g., methanol) evaporation, thereby limiting the experimental window to tens of minutes per sample. In this work, we demonstrate a strategy to rapidly generate the best-to-date precatalyst (a compound that is chemically modified in the course of the reaction to yield the catalyst) for SABRE, [Ir(IMes)(COD)Cl] (IMes = 1,3-bis-[2,4,6-trimethylphenyl]-imidazol-2-ylidene; COD = cyclooctadiene) via a highly accessible synthesis. Second, we measure hyperpolarized samples using a home-built zero-field NMR spectrometer and study the field dependence of hyperpolarization directly in the detection apparatus, eliminating the need to physically move the sample during the experiment. Finally, we prolong the measurement time and reduce evaporation by presaturating parahydrogen with the solvent vapor before bubbling into the sample. These advancements extend opportunities for exploring SABRE hyperpolarization by researchers from various fields and pave the way to producing large quantities of hyperpolarized material for long-lasting detection of SABRE-derived nuclear magnetization., (© 2021 The Authors. Magnetic Resonance in Chemistry published by John Wiley & Sons Ltd.)- Published
- 2021
- Full Text
- View/download PDF
20. Empowering Equitable Data Use Partnerships and Indigenous Data Sovereignties Amid Pandemic Genomics.
- Author
-
Haring RC, Blanchard JW, Korchmaros JD, Lund JR, Haozous EA, Raphaelito J, Hudson M, and Tsosie KS
- Subjects
- Genomics, Humans, Power, Psychological, SARS-CoV-2, United States epidemiology, COVID-19, Pandemics
- Abstract
The COVID-19 pandemic has inequitably impacted Indigenous communities in the United States. In this emergency state that highlighted existing inadequacies in US government and tribal public health infrastructures, many tribal nations contracted with commercial entities and other organization types to conduct rapid diagnostic and antibody testing, often based on proprietary technologies specific to the novel pathogen. They also partnered with public-private enterprises on clinical trials to further the development of vaccines. Indigenous people contributed biological samples for assessment and, in many cases, broadly consented for indefinite use for future genomics research. A concern is that the need for crisis aid may have placed Indigenous communities in a position to forego critical review of data use agreements by tribal research governances. In effect, tribal nations were placed in the unenviable position of trading short-term public health assistance for long-term, unrestricted access to Indigenous genomes that may disempower future tribal sovereignties over community members' data. Diagnostic testing, specimen collection, and vaccine research is ongoing; thus, our aim is to outline pathways to trust that center current and future equitable relationship-building between tribal entities and public-private interests. These pathways can be utilized to increase Indigenous communities' trust of external partners and share understanding of expectations for and execution of data protections. We discuss how to navigate genomic-based data use agreements in the context of pathogen genomics. While we focus on US tribal nations, Indigenous genomic data sovereignties relate to global Indigenous nations regardless of colonial government recognition., Competing Interests: KT serves as a non-compensated board member of a non-profit 501(c)3 Indigenous biobank initiative, the Native BioData Consortium, in the United States. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Haring, Blanchard, Korchmaros, Lund, Haozous, Raphaelito, Hudson and Tsosie.)
- Published
- 2021
- Full Text
- View/download PDF
21. Deliberations with American Indian and Alaska Native People about the Ethics of Genomics: An Adapted Model of Deliberation Used with Three Tribal Communities in the United States.
- Author
-
Blacksher E, Hiratsuka VY, Blanchard JW, Lund JR, Reedy J, Beans JA, Saunkeah B, Peercy M, Byars C, Yracheta J, Tsosie KS, O'Leary M, Ducheneaux G, and Spicer PG
- Subjects
- Genomics, Humans, Leadership, United States, American Indian or Alaska Native, Alaska Natives
- Abstract
Background: This paper describes the design, implementation, and process outcomes from three public deliberations held in three tribal communities. Although increasingly used around the globe to address collective challenges, our study is among the first to adapt public deliberation for use with exclusively Indigenous populations. In question was how to design deliberations for tribal communities and whether this adapted model would achieve key deliberative goals and be well received., Methods: We adapted democratic deliberation, an approach to stakeholder engagement, for use with three tribal communities to respect tribal values and customs. Public deliberation convenes people from diverse backgrounds in reasoned reflection and dialogue in search of collective solutions. The deliberation planning process and design were informed by frameworks of enclave deliberation and community-based participatory research, which share key egalitarian values. The deliberations were collaboratively designed with tribal leadership and extensive partner input and involvement in the deliberations. Each deliberation posed different, locally relevant questions about genomic research, but used the same deliberation structure and measures to gauge the quality and experience of deliberation., Results: A total of 52 individuals participated in the deliberations across all three sites. Deliberants were balanced in gender, spanned decades in age, and were diverse in educational attainment and exposure to health research. Overall, the deliberations were positively evaluated. Participant perceptions and external observer datasets depict three deliberations that offered intensive conversation experiences in which participants learned from one another, reported feeling respected and connected to one another, and endorsed this intensive form of engagement., Conclusion: The adapted deliberations achieved key deliberative goals and were generally well received. Limitations of the study are described.
- Published
- 2021
- Full Text
- View/download PDF
22. Photochemically Induced Dynamic Nuclear Polarization of Heteronuclear Singlet Order.
- Author
-
Sheberstov KF, Chuchkova L, Hu Y, Zhukov IV, Kiryutin AS, Eshtukov AV, Cheshkov DA, Barskiy DA, Blanchard JW, Budker D, Ivanov KL, and Yurkovskaya AV
- Abstract
Photochemically induced dynamic nuclear polarization (photo-CIDNP) is a method to hyperpolarize nuclear spins using light. In most cases, CIDNP experiments are performed in high magnetic fields and the sample is irradiated by light inside a nuclear magnetic resonance (NMR) spectrometer. Here we demonstrate photo-CIDNP hyperpolarization generated in the Earth's magnetic field and under zero- to ultralow-field (ZULF) conditions. Irradiating a sample containing tetraphenylporphyrin and para-benzoquinone for several seconds with light-emitting diodes produces strong hyperpolarization of
1 H and13 C nuclear spins, enhancing the NMR signals more than 200 times. The hyperpolarized spin states at the Earth's field and in ZULF are different. In the latter case, the state corresponds to the singlet order between scalar-coupled1 H-13 C nuclear spins. This state has a longer lifetime than the state hyperpolarized at Earth's field. The method is simple and cost-efficient and should be applicable to many molecular systems known to exhibit photo-CIDNP, including amino acids and nucleotides.- Published
- 2021
- Full Text
- View/download PDF
23. Correlation of high-field and zero- to ultralow-field NMR properties using 2D spectroscopy.
- Author
-
Zhukov IV, Kiryutin AS, Yurkovskaya AV, Blanchard JW, Budker D, and Ivanov KL
- Abstract
The field of zero- to ultralow-field (ZULF) nuclear magnetic resonance (NMR) is currently experiencing rapid growth, owing to progress in optical magnetometry and attractive features of ZULF-NMR such as low hardware cost and excellent spectral resolution achieved under ZULF conditions. In this work, an approach is proposed and demonstrated for simultaneous acquisition of ZULF-NMR spectra of individual
13 C-containing isotopomers of chemical compounds in a complex mixture. The method makes use of fast field cycling such that the spin evolution takes place under ZULF conditions, whereas signal detection is performed in a high-field NMR spectrometer. This method has excellent sensitivity, also allowing easy assignment of ZULF-NMR spectra to specific analytes in the mixture. We demonstrate that the spectral information is the same as that given by ZULF-NMR, which makes the method suitable for creating a library of ZULF-NMR spectra of various compounds and their isotopomers. The results of the field-cycling experiments can be presented in a convenient way as 2D-NMR spectra with the direct dimension giving the high-field13 C-NMR spectrum (carrying the chemical-shift information) and the indirect dimension giving the ZULF-NMR spectrum (containing information about proton-carbon J-couplings). Hence, the method can be seen as a variant of heteronuclear J-resolved spectroscopy, one of the first 2D-NMR techniques.- Published
- 2021
- Full Text
- View/download PDF
24. Search for Axionlike Dark Matter Using Solid-State Nuclear Magnetic Resonance.
- Author
-
Aybas D, Adam J, Blumenthal E, Gramolin AV, Johnson D, Kleyheeg A, Afach S, Blanchard JW, Centers GP, Garcon A, Engler M, Figueroa NL, Sendra MG, Wickenbrock A, Lawson M, Wang T, Wu T, Luo H, Mani H, Mauskopf P, Graham PW, Rajendran S, Kimball DFJ, Budker D, and Sushkov AO
- Abstract
We report the results of an experimental search for ultralight axionlike dark matter in the mass range 162-166 neV. The detection scheme of our Cosmic Axion Spin Precession Experiment is based on a precision measurement of ^{207}Pb solid-state nuclear magnetic resonance in a polarized ferroelectric crystal. Axionlike dark matter can exert an oscillating torque on ^{207}Pb nuclear spins via the electric dipole moment coupling g_{d} or via the gradient coupling g_{aNN}. We calibrate the detector and characterize the excitation spectrum and relaxation parameters of the nuclear spin ensemble with pulsed magnetic resonance measurements in a 4.4 T magnetic field. We sweep the magnetic field near this value and search for axionlike dark matter with Compton frequency within a 1 MHz band centered at 39.65 MHz. Our measurements place the upper bounds |g_{d}|<9.5×10^{-4} GeV^{-2} and |g_{aNN}|<2.8×10^{-1} GeV^{-1} (95% confidence level) in this frequency range. The constraint on g_{d} corresponds to an upper bound of 1.0×10^{-21} e cm on the amplitude of oscillations of the neutron electric dipole moment and 4.3×10^{-6} on the amplitude of oscillations of CP-violating θ parameter of quantum chromodynamics. Our results demonstrate the feasibility of using solid-state nuclear magnetic resonance to search for axionlike dark matter in the neV mass range.
- Published
- 2021
- Full Text
- View/download PDF
25. Rapid hyperpolarization and purification of the metabolite fumarate in aqueous solution.
- Author
-
Knecht S, Blanchard JW, Barskiy D, Cavallari E, Dagys L, Van Dyke E, Tsukanov M, Bliemel B, Münnemann K, Aime S, Reineri F, Levitt MH, Buntkowsky G, Pines A, Blümler P, Budker D, and Eills J
- Subjects
- Solutions, Biosensing Techniques, Carbon-13 Magnetic Resonance Spectroscopy, Fumarates isolation & purification, Fumarates metabolism, Molecular Imaging methods, Water chemistry
- Abstract
Hyperpolarized fumarate is a promising biosensor for carbon-13 magnetic resonance metabolic imaging. Such molecular imaging applications require nuclear hyperpolarization to attain sufficient signal strength. Dissolution dynamic nuclear polarization is the current state-of-the-art methodology for hyperpolarizing fumarate, but this is expensive and relatively slow. Alternatively, this important biomolecule can be hyperpolarized in a cheap and convenient manner using parahydrogen-induced polarization. However, this process requires a chemical reaction, and the resulting solutions are contaminated with the catalyst, unreacted reagents, and reaction side-product molecules, and are hence unsuitable for use in vivo. In this work we show that the hyperpolarized fumarate can be purified from these contaminants by acid precipitation as a pure solid, and later redissolved to a desired concentration in a clean aqueous solvent. Significant advances in the reaction conditions and reactor equipment allow for formation of hyperpolarized fumarate at
13 C polarization levels of 30-45%., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)- Published
- 2021
- Full Text
- View/download PDF
26. Lower than low: Perspectives on zero- to ultralow-field nuclear magnetic resonance.
- Author
-
Blanchard JW, Budker D, and Trabesinger A
- Abstract
The less-traveled low road in nuclear magnetic resonance is discussed, honoring the contributions of Prof. Bernhard Blümich, aspiring towards reaching 'a new low.' A history of the subject and its current status are briefly reviewed, followed by an effort to prophesy possible directions for future developments., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: [J.W.B. and D.B. are in the process of applying for a patent for ZULF NMR with radioactive detection.], (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
27. Author Correction: Reconstruction of the human blood-brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes.
- Author
-
Blanchard JW, Bula M, Davila-Velderrain J, Akay LA, Zhu L, Frank A, Victor MB, Bonner JM, Mathys H, Lin YT, Ko T, Bennett DA, Cam HP, Kellis M, and Tsai LH
- Published
- 2021
- Full Text
- View/download PDF
28. Introductions to the Community: Early-Career Researchers in the Time of COVID-19.
- Author
-
Tchieu J, Urbán N, Soragni A, Kawaguchi K, Blanchard JW, and Li L
- Abstract
COVID-19 has unfortunately halted lab work, conferences, and in-person networking, which is especially detrimental to researchers just starting their labs. Through social media and our reviewer networks, we met some early-career stem cell investigators impacted by the closures. Here, they introduce themselves and their research to our readers., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
29. Chemical Reaction Monitoring using Zero-Field Nuclear Magnetic Resonance Enables Study of Heterogeneous Samples in Metal Containers.
- Author
-
Burueva DB, Eills J, Blanchard JW, Garcon A, Picazo-Frutos R, Kovtunov KV, Koptyug IV, and Budker D
- Abstract
We demonstrate that heterogeneous/biphasic chemical reactions can be monitored with high spectroscopic resolution using zero-field nuclear magnetic resonance spectroscopy. This is possible because magnetic susceptibility broadening is negligible at ultralow magnetic fields. We show the two-step hydrogenation of dimethyl acetylenedicarboxylate with para-enriched hydrogen gas in conventional glass NMR tubes, as well as in a titanium tube. The low frequency zero-field NMR signals ensure that there is no significant signal attenuation arising from shielding by the electrically conductive sample container. This method paves the way for in situ monitoring of reactions in complex heterogeneous multiphase systems and in reactors made of conductive materials while maintaining resolution and chemical specificity., (© 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)
- Published
- 2020
- Full Text
- View/download PDF
30. Two-dimensional single- and multiple-quantum correlation spectroscopy in zero-field nuclear magnetic resonance.
- Author
-
Sjolander TF, Blanchard JW, Budker D, and Pines A
- Abstract
We present single- and multiple-quantum correlation J-spectroscopy detected in zero (<1μG) magnetic field using a
87 Rb vapor-cell magnetometer. At zero field the spectrum of ethanol appears as a mixture of13 C isotopomers, and correlation spectroscopy is useful in separating the two composite spectra. We also identify and observe the zero-field equivalent of a double-quantum transition in13 C2 -acetic acid, and show that such transitions are of use in spectral assignment. Two-dimensional spectroscopy further improves the high resolution attained in zero-field NMR since selection rules on the coherence-transfer pathways allow for the separation of otherwise overlapping resonances into distinct cross-peaks., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Inc. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
31. Reconstruction of the human blood-brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes.
- Author
-
Blanchard JW, Bula M, Davila-Velderrain J, Akay LA, Zhu L, Frank A, Victor MB, Bonner JM, Mathys H, Lin YT, Ko T, Bennett DA, Cam HP, Kellis M, and Tsai LH
- Subjects
- Amyloid beta-Peptides metabolism, Apolipoprotein E3 genetics, Apolipoprotein E3 metabolism, Apolipoprotein E4 metabolism, Blood-Brain Barrier cytology, Humans, In Vitro Techniques, Induced Pluripotent Stem Cells, NFATC Transcription Factors metabolism, Permeability, RNA-Seq, Transcription Factors genetics, Transcription Factors metabolism, Apolipoprotein E4 genetics, Blood-Brain Barrier metabolism, Calcineurin metabolism, Cerebral Amyloid Angiopathy genetics, NFATC Transcription Factors genetics, Pericytes metabolism
- Abstract
In Alzheimer's disease, amyloid deposits along the brain vasculature lead to a condition known as cerebral amyloid angiopathy (CAA), which impairs blood-brain barrier (BBB) function and accelerates cognitive degeneration. Apolipoprotein (APOE4) is the strongest risk factor for CAA, yet the mechanisms underlying this genetic susceptibility are unknown. Here we developed an induced pluripotent stem cell-based three-dimensional model that recapitulates anatomical and physiological properties of the human BBB in vitro. Similarly to CAA, our in vitro BBB displayed significantly more amyloid accumulation in APOE4 compared to APOE3. Combinatorial experiments revealed that dysregulation of calcineurin-nuclear factor of activated T cells (NFAT) signaling and APOE in pericyte-like mural cells induces APOE4-associated CAA pathology. In the human brain, APOE and NFAT are selectively dysregulated in pericytes of APOE4 carriers, and inhibition of calcineurin-NFAT signaling reduces APOE4-associated CAA pathology in vitro and in vivo. Our study reveals the role of pericytes in APOE4-mediated CAA and highlights calcineurin-NFAT signaling as a therapeutic target in CAA and Alzheimer's disease.
- Published
- 2020
- Full Text
- View/download PDF
32. Sensitive magnetometry reveals inhomogeneities in charge storage and weak transient internal currents in Li-ion cells.
- Author
-
Hu Y, Iwata GZ, Mohammadi M, Silletta EV, Wickenbrock A, Blanchard JW, Budker D, and Jerschow A
- Abstract
The ever-increasing demand for high-capacity rechargeable batteries highlights the need for sensitive and accurate diagnostic technology for determining the state of a cell, for identifying and localizing defects, and for sensing capacity loss mechanisms. Here, we leverage atomic magnetometry to map the weak induced magnetic fields around Li-ion battery cells in a magnetically shielded environment. The ability to rapidly measure cells nondestructively allows testing even commercial cells in their actual operating conditions, as a function of state of charge. These measurements provide maps of the magnetic susceptibility of the cell, which follow trends characteristic for the battery materials under study upon discharge. In particular, hot spots of charge storage are identified. In addition, the measurements reveal the capability to measure transient internal current effects, at a level of μA, which are shown to be dependent upon the state of charge. These effects highlight noncontact battery characterization opportunities. The diagnostic power of this technique could be used for the assessment of cells in research, quality control, or during operation, and could help uncover details of charge storage and failure processes in cells., Competing Interests: Competing interest statement: The authors have filed a US provisional patent: Application number 62838909, EFS ID: 35838262, “System and method for magnetic susceptometry of devices with magnetometry.”
- Published
- 2020
- Full Text
- View/download PDF
33. Deliberations About Genomic Research and Biobanks With Citizens of the Chickasaw Nation.
- Author
-
Reedy J, Blanchard JW, Lund J, Spicer PG, Byars C, Peercy M, Saunkeah B, and Blacksher E
- Abstract
Amid the rapid growth of precision medicine and biobanking initiatives, there have been few efforts at cataloging the implications of these initiatives for Indigenous communities. A consortium involving a university and three American Indian/Alaska Native (AIAN) community partners is working to promote deliberation and dialog in AIAN communities about the potential benefits and risks of genomic research for those communities. The first of the consortium's three planned deliberations was held in September 2018 with citizens of the Chickasaw Nation, a federally recognized tribe in south-central Oklahoma with a full-service medical center and growing research capacity and oversight. Consortium members and the Chickasaw Nation Department of Health Administration designed a deliberative forum for Chickasaw citizens to consider the potential benefits and risks of participating in genomic research and biobanks. In this manuscript, we describe the deliberative method used in this event and report on the ideas discussed during the tribal citizens' deliberations. Chickasaw citizens identified many risks and benefits associated with genomic research and biobanks, including the potential for medical advancements that might benefit the Chickasaw community as well as the possibility of discrimination against the Chickasaw people. Although participants thought the potential benefits outweighed the potential risks, that moral calculation was contingent on whether control of the research and biobanks rested with Chickasaw leadership, researchers, and citizens., (Copyright © 2020 Reedy, Blanchard, Lund, Spicer, Byars, Peercy, Saunkeah and Blacksher.)
- Published
- 2020
- Full Text
- View/download PDF
34. Zero- to ultralow-field nuclear magnetic resonance J-spectroscopy with commercial atomic magnetometers.
- Author
-
Blanchard JW, Wu T, Eills J, Hu Y, and Budker D
- Abstract
Zero- to ultralow-field nuclear magnetic resonance (ZULF NMR) is an alternative spectroscopic method to high-field NMR, in which samples are studied in the absence of a large magnetic field. Unfortunately, there is a large barrier to entry for many groups, because operating the optical magnetometers needed for signal detection requires some expertise in atomic physics and optics. Commercially available magnetometers offer a solution to this problem. Here we describe a simple ZULF NMR configuration employing commercial magnetometers, and demonstrate sufficient functionality to measure samples with nuclear spins prepolarized in a permanent magnet or initialized using parahydrogen. This opens the possibility for other groups to use ZULF NMR, which provides a means to study complex materials without magnetic susceptibility-induced line broadening, and to observe samples through conductive materials., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
35. An Alaska Native community's views on genetic research, testing, and return of results: Results from a public deliberation.
- Author
-
Hiratsuka VY, Beans JA, Blanchard JW, Reedy J, Blacksher E, Lund JR, and Spicer PG
- Subjects
- Adult, Alaska ethnology, Female, Genetic Research ethics, Humans, Male, Alaska Natives psychology, Genetic Testing ethics, Health Knowledge, Attitudes, Practice ethnology
- Abstract
As genetic testing technology advances, genetic testing will move into standard practice in the primary care setting. Genetic research, testing, and return of results are complex topics that require input from Alaska Native and American Indian (ANAI) communities as policies are developed for implementation. This study employed a day and half long public deliberation with ANAI primary care patients to elicit value-laden views of genetic research, testing, and return of results. Participants emphasized the need for a balance between the potential for genetics research, testing, and return of results to empower individuals and improve health with the potential to expose individuals and communities to privacy breaches, discrimination, and emotional harms. Public deliberation was well received by this group of participants and elicited rich discussion on the complex topic of genetic research, testing, and return of results., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
- Full Text
- View/download PDF
36. Deliberative democracy and historical perspectives on American Indian/Alaska native political decision-making practices.
- Author
-
Reedy J, Orr R, Spicer P, Blanchard JW, Hiratsuka VY, Ketchum TS, Saunkeah B, Wark K, and Woodbury RB
- Abstract
Public deliberation has risen to the forefront of governance as a technique for increasing participation in policy making. Scholars and practitioners have also noted the potential for deliberation to give greater influence to historically marginalized populations, such as Indigenous peoples. However, there has been less attention paid to the potential fit between the ideals of deliberation and the governance and decision making practices of American Indian and Alaska Native (AI/AN) peoples. In this paper, we begin to address this gap by analyzing accounts of AI/AN governance from the perspective of deliberation, and note areas of overlap, synergy, and conflict. We conduct a close reading of key historical and ethnographic accounts of four historical AI/AN contexts-the Iroquois Confederation under the Great Law of Peace, 19th century accounts of the Ojibwa village, the Santa Clara Pueblo government in pre-19th century, and Yup'ik village life in the early 20th century-and a more contemporary case in the form of the Santa Clara Pueblo's Constitution from the Indian Reorganization Act period. We then apply two sets of key criteria for deliberative democracy-from the scholars Robert Dahl and John Gastil-to these accounts and note the ways in which each system is or is not congruent with these frameworks of deliberation. We find variations between these historical tribal contexts in our analysis. Social components of deliberation, such as respectful discussion and equal opportunities to participate, were partially or fully present in many accounts of governance practices, but it was less clear whether the analytic components, such as discussion of a range of solutions, were included in some forms of tribal governance. We then explore the potential implications of our findings for public deliberation within and in AI/AN tribes. We note that deliberative scholars and practitioners should be wary of over-generalizing about AI/AN tribes., Competing Interests: Competing interests The authors declare no competing interests.
- Published
- 2020
- Full Text
- View/download PDF
37. Constraints on bosonic dark matter from ultralow-field nuclear magnetic resonance.
- Author
-
Garcon A, Blanchard JW, Centers GP, Figueroa NL, Graham PW, Jackson Kimball DF, Rajendran S, Sushkov AO, Stadnik YV, Wickenbrock A, Wu T, and Budker D
- Abstract
The nature of dark matter, the invisible substance making up over 80% of the matter in the universe, is one of the most fundamental mysteries of modern physics. Ultralight bosons such as axions, axion-like particles, or dark photons could make up most of the dark matter. Couplings between such bosons and nuclear spins may enable their direct detection via nuclear magnetic resonance (NMR) spectroscopy: As nuclear spins move through the galactic dark-matter halo, they couple to dark matter and behave as if they were in an oscillating magnetic field, generating a dark-matter-driven NMR signal. As part of the cosmic axion spin precession experiment (CASPEr), an NMR-based dark-matter search, we use ultralow-field NMR to probe the axion-fermion "wind" coupling and dark-photon couplings to nuclear spins. No dark matter signal was detected above background, establishing new experimental bounds for dark matter bosons with masses ranging from 1.8 × 10
-16 to 7.8 × 10-14 eV., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)- Published
- 2019
- Full Text
- View/download PDF
38. Wu et al. Reply.
- Author
-
Wu T, Blanchard JW, Centers GP, Figueroa NL, Garcon A, Graham PW, Kimball DFJ, Rajendran S, Stadnik YV, Sushkov AO, Wickenbrock A, and Budker D
- Published
- 2019
- Full Text
- View/download PDF
39. "We Don't Need a Swab in Our Mouth to Prove Who We Are": Identity, Resistance, and Adaptation of Genetic Ancestry Testing among Native American Communities.
- Author
-
Blanchard JW, Outram S, Tallbull G, and Royal CDM
- Abstract
Genetic ancestry testing (GAT) provides a specific type of knowledge about ancestry not previously available to the general public, prompting questions about the conditions whereby genetic articulations of ancestry present opportunities to forge new identities and social ties but also new challenges to the maintenance of existing social structures and cultural identities. The opportunities and challenges posed by GAT are particularly significant for many indigenous communities-whose histories are shaped by traumatic interactions with colonial powers and Western science-and for whom new applications of GAT may undermine or usurp long-standing community values, systems of governance, and forms of relationality. We conducted 13 focus groups with 128 participants and six in-depth, semistructured interviews with a variety of community leaders examining the perceptions of GAT within indigenous communities across Oklahoma. Our interviews and focus groups suggest that participants-through the articulation of indigeneity as experiential and relational in nature and inherently distinct from genetic notions of ancestry-resist much of the challenge presented by GAT in usurping traditional forms of identity while at the same time recognizing the utility of the technology for tracing unknown ancestry and identifying health risks in the community.
- Published
- 2019
- Full Text
- View/download PDF
40. Zero-field nuclear magnetic resonance of chemically exchanging systems.
- Author
-
Barskiy DA, Tayler MCD, Marco-Rius I, Kurhanewicz J, Vigneron DB, Cikrikci S, Aydogdu A, Reh M, Pravdivtsev AN, Hövener JB, Blanchard JW, Wu T, Budker D, and Pines A
- Abstract
Zero- to ultralow-field (ZULF) nuclear magnetic resonance (NMR) is an emerging tool for precision chemical analysis. In this work, we study dynamic processes and investigate the influence of chemical exchange on ZULF NMR J-spectra. We develop a computational approach that allows quantitative calculation of J-spectra in the presence of chemical exchange and apply it to study aqueous solutions of [
15 N]ammonium (15 N[Formula: see text]) as a model system. We show that pH-dependent chemical exchange substantially affects the J-spectra and, in some cases, can lead to degradation and complete disappearance of the spectral features. To demonstrate potential applications of ZULF NMR for chemistry and biomedicine, we show a ZULF NMR spectrum of [2-13 C]pyruvic acid hyperpolarized via dissolution dynamic nuclear polarization (dDNP). We foresee applications of affordable and scalable ZULF NMR coupled with hyperpolarization to study chemical exchange phenomena in vivo and in situations where high-field NMR detection is not possible to implement.- Published
- 2019
- Full Text
- View/download PDF
41. Search for Axionlike Dark Matter with a Liquid-State Nuclear Spin Comagnetometer.
- Author
-
Wu T, Blanchard JW, Centers GP, Figueroa NL, Garcon A, Graham PW, Kimball DFJ, Rajendran S, Stadnik YV, Sushkov AO, Wickenbrock A, and Budker D
- Abstract
We report the results of a search for axionlike dark matter using nuclear magnetic resonance (NMR) techniques. This search is part of the multifaceted Cosmic Axion Spin Precession Experiment program. In order to distinguish axionlike dark matter from magnetic fields, we employ a comagnetometry scheme measuring ultralow-field NMR signals involving two different nuclei (^{13}C and ^{1}H) in a liquid-state sample of acetonitrile-2-^{13}C (^{13}CH_{3}CN). No axionlike dark matter signal was detected above the background. This result constrains the parameter space describing the coupling of the gradient of the axionlike dark matter field to nucleons to be g_{aNN}<6×10^{-5} GeV^{-1} (95% confidence level) for particle masses ranging from 10^{-22} eV to 1.3×10^{-17} eV, improving over previous laboratory limits for masses below 10^{-21} eV. The result also constrains the coupling of nuclear spins to the gradient of the square of the axionlike dark matter field, improving over astrophysical limits by orders of magnitude over the entire range of particle masses probed.
- Published
- 2019
- Full Text
- View/download PDF
42. Polarization transfer via field sweeping in parahydrogen-enhanced nuclear magnetic resonance.
- Author
-
Eills J, Blanchard JW, Wu T, Bengs C, Hollenbach J, Budker D, and Levitt MH
- Abstract
We show that in a spin system of two magnetically inequivalent protons coupled to a heteronucleus such as
13 C, an adiabatic magnetic field sweep, passing through zero field, transfers the proton singlet order into magnetization of the coupled heteronucleus. This effect is potentially useful in parahydrogen-enhanced nuclear magnetic resonance and is demonstrated on singlet-hyperpolarized [1-13 C]maleic acid, which is prepared via the reaction between [1-13 C]acetylene dicarboxylic acid and para-enriched hydrogen gas. The magnetic field sweeps are of microtesla amplitudes and have durations on the order of seconds. We show a polarization enhancement by a factor of 104 in the13 C spectra of [1-13 C]maleic acid in a 1.4 T magnetic field.- Published
- 2019
- Full Text
- View/download PDF
43. Unraveling the Paradox of Statins with Human Neurons: New Leads in Alzheimer's Disease.
- Author
-
Blanchard JW and Tsai LH
- Subjects
- Amyloid beta-Peptides, Cholesterol, Humans, Neurons, tau Proteins, Alzheimer Disease, Hydroxymethylglutaryl-CoA Reductase Inhibitors
- Abstract
Conflicting clinical studies have reported that statins both reduce and accelerate cognitive impairments in Alzheimer's disease. In this issue, Van der Kant et al. (2019) use iPSC-derived neurons to thoroughly dissect the link between cholesterol synthesis, phospho-Tau, and amyloid-β, revealing new therapeutic opportunities in Alzheimer's disease and related dementias., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
44. Nuclear-Spin Comagnetometer Based on a Liquid of Identical Molecules.
- Author
-
Wu T, Blanchard JW, Jackson Kimball DF, Jiang M, and Budker D
- Abstract
Atomic comagnetometers are used in searches for anomalous spin-dependent interactions. Magnetic field gradients are one of the major sources of systematic errors in such experiments. Here we describe a comagnetometer based on the nuclear spins within an ensemble of identical molecules. The dependence of the measured spin-precession frequency ratio on the first-order magnetic field gradient is suppressed by over an order of magnitude compared to a comagnetometer based on overlapping ensembles of different molecules. Our single-species comagnetometer is capable of measuring the hypothetical spin-dependent gravitational energy of nuclei at the 10^{-17} eV level, comparable to the most stringent existing constraints. Combined with techniques for enhancing the signal such as parahydrogen-induced polarization, this method of comagnetometry offers the potential to improve constraints on spin-gravity coupling of nucleons by several orders of magnitude.
- Published
- 2018
- Full Text
- View/download PDF
45. Experimental benchmarking of quantum control in zero-field nuclear magnetic resonance.
- Author
-
Jiang M, Wu T, Blanchard JW, Feng G, Peng X, and Budker D
- Abstract
Demonstration of coherent control and characterization of the control fidelity is important for the development of quantum architectures such as nuclear magnetic resonance (NMR). We introduce an experimental approach to realize universal quantum control, and benchmarking thereof, in zero-field NMR, an analog of conventional high-field NMR that features less-constrained spin dynamics. We design a composite pulse technique for both arbitrary one-spin rotations and a two-spin controlled-not (CNOT) gate in a heteronuclear two-spin system at zero field, which experimentally demonstrates universal quantum control in such a system. Moreover, using quantum information-inspired randomized benchmarking and partial quantum process tomography, we evaluate the quality of the control, achieving single-spin control for
13 C with an average fidelity of 0.9960(2) and two-spin control via a CNOT gate with a fidelity of 0.9877(2). Our method can also be extended to more general multispin heteronuclear systems at zero field. The realization of universal quantum control in zero-field NMR is important for quantum state/coherence preparation, pulse sequence design, and is an essential step toward applications to materials science, chemical analysis, and fundamental physics.- Published
- 2018
- Full Text
- View/download PDF
46. Genes, Race, and Causation: US Public Perspectives About Racial Difference.
- Author
-
Outram S, Graves JL, Powell J, Wolpert C, Haynie KL, Foster MW, Blanchard JW, Hoffmeyer A, Agans RP, and Royal CD
- Abstract
Concerns have been raised that the increase in popular interest in genetics may herald a new era within which racial inequities are seen as 'natural' or immutable. In the following study, we provide data from a nationally representative survey on how the US population perceives general ability, athleticism, and intellect being determined by race and/or genetics and whether they believe racial health inequities to be primarily the product of genetic or social factors. We find that self-described race is of primary importance in attributing general ability to race, increasing age is a significant factor in attributing athleticism and intellect to genes and race, and education is a significant factor in decreasing such racially and genetically deterministic views . Beliefs about the meaning of race are statistically significantly associated with respect to the perception of athletic abilities and marginally associated with the perception of racial health inequalities being either socially or genetically derived. Race, education, socioeconomic status, and concepts of race were frequently found to be multiplicative in their statistical effects. The persistent acceptance of a genetically and racially deterministic view of athleticism among the White and older population group is discussed in respect to its social impact, as is the high level of agreement that general abilities are determined by race among non-White respondents and those of lower socioeconomic status. We argue that these findings highlight that both biological and non-biological forms of understanding race continue to play a role into the politics of race and social difference within contemporary US society.
- Published
- 2018
- Full Text
- View/download PDF
47. Diverse reprogramming codes for neuronal identity.
- Author
-
Tsunemoto R, Lee S, Szűcs A, Chubukov P, Sokolova I, Blanchard JW, Eade KT, Bruggemann J, Wu C, Torkamani A, Sanna PP, and Baldwin KK
- Subjects
- Animals, Fibroblasts cytology, Fibroblasts metabolism, Gene Expression Profiling, Gene Regulatory Networks, Humans, Induced Pluripotent Stem Cells cytology, Induced Pluripotent Stem Cells metabolism, Mice, Neurons drug effects, Sequence Analysis, RNA, Single-Cell Analysis, Transcription Factors metabolism, Transcriptome genetics, Cellular Reprogramming genetics, Neurons cytology, Neurons metabolism
- Abstract
The transcriptional programs that establish neuronal identity evolved to produce the rich diversity of neuronal cell types that arise sequentially during development. Remarkably, transient expression of certain transcription factors can also endow non-neural cells with neuronal properties. The relationship between reprogramming factors and the transcriptional networks that produce neuronal identity and diversity remains largely unknown. Here, from a screen of 598 pairs of transcription factors, we identify 76 pairs of transcription factors that induce mouse fibroblasts to differentiate into cells with neuronal features. By comparing the transcriptomes of these induced neuronal cells (iN cells) with those of endogenous neurons, we define a 'core' cell-autonomous neuronal signature. The iN cells also exhibit diversity; each transcription factor pair produces iN cells with unique transcriptional patterns that can predict their pharmacological responses. By linking distinct transcription factor input 'codes' to defined transcriptional outputs, this study delineates cell-autonomous features of neuronal identity and diversity and expands the reprogramming toolbox to facilitate engineering of induced neurons with desired patterns of gene expression and related functional properties.
- Published
- 2018
- Full Text
- View/download PDF
48. Nondestructive in-line sub-picomolar detection of magnetic nanoparticles in flowing complex fluids.
- Author
-
Bougas L, Langenegger LD, Mora CA, Zeltner M, Stark WJ, Wickenbrock A, Blanchard JW, and Budker D
- Abstract
Over the last decades, the use of magnetic nanoparticles in research and commercial applications has increased dramatically. However, direct detection of trace quantities remains a challenge in terms of equipment cost, operating conditions and data acquisition times, especially in flowing conditions within complex media. Here we present the in-line, non-destructive detection of magnetic nanoparticles using high performance atomic magnetometers at ambient conditions in flowing media. We achieve sub-picomolar sensitivities measuring ~30 nm ferromagnetic iron and cobalt nanoparticles that are suitable for biomedical and industrial applications, under flowing conditions in water and whole blood. Additionally, we demonstrate real-time surveillance of the magnetic separation of nanoparticles from water and whole blood. Overall our system has the merit of in-line direct measurement of trace quantities of ferromagnetic nanoparticles with so far unreached sensitivities and could be applied in the biomedical field (diagnostics and therapeutics) but also in the industrial sector.
- Published
- 2018
- Full Text
- View/download PDF
49. A method for measurement of spin-spin couplings with sub-mHz precision using zero- to ultralow-field nuclear magnetic resonance.
- Author
-
Wilzewski A, Afach S, Blanchard JW, and Budker D
- Abstract
We present a method which allows for the extraction of physical quantities directly from zero- to ultralow-field nuclear magnetic resonance (ZULF NMR) data. A numerical density matrix evolution is used to simulate ZULF NMR spectra of several molecules in order to fit experimental data. The method is utilized to determine the indirect spin-spin couplings (J-couplings) in these systems, which is achieved with precision of 10
-2 -10-4 Hz. The simulated and measured spectra are compared to earlier research. Agreement and improved precision are achieved for most of the J-coupling estimates. The availability of fast, flexible fitting method for ZULF NMR enables a new generation of precision-measurement experiments for spin-dependent interactions and physics beyond the Standard Model., (Copyright © 2017 Elsevier Inc. All rights reserved.)- Published
- 2017
- Full Text
- View/download PDF
50. Replacing reprogramming factors with antibodies selected from combinatorial antibody libraries.
- Author
-
Blanchard JW, Xie J, El-Mecharrafie N, Gross S, Lee S, Lerner RA, and Baldwin KK
- Subjects
- Animals, Autocrine Communication, Blastocyst cytology, Calmodulin-Binding Proteins metabolism, Clone Cells, Cytoskeletal Proteins metabolism, Fibroblasts cytology, Fibroblasts drug effects, Induced Pluripotent Stem Cells cytology, Induced Pluripotent Stem Cells drug effects, Mice, Inbred C57BL, Nerve Tissue Proteins metabolism, Phosphorylation drug effects, Protein Binding drug effects, Proto-Oncogene Proteins c-myc metabolism, Reproducibility of Results, SOXB1 Transcription Factors metabolism, Smad Proteins metabolism, Transforming Growth Factor beta pharmacology, Up-Regulation drug effects, Antibodies metabolism, Cellular Reprogramming drug effects, Combinatorial Chemistry Techniques
- Abstract
The reprogramming of differentiated cells into induced pluripotent stem cells (iPSCs) is usually achieved by exogenous induction of transcription by factors acting in the nucleus. In contrast, during development, signaling pathways initiated at the membrane induce differentiation. The central idea of this study is to identify antibodies that can catalyze cellular de-differentiation and nuclear reprogramming by acting at the cell surface. We screen a lentiviral library encoding ∼100 million secreted and membrane-bound single-chain antibodies and identify antibodies that can replace either Sox2 and Myc (c-Myc) or Oct4 during reprogramming of mouse embryonic fibroblasts into iPSCs. We show that one Sox2-replacing antibody antagonizes the membrane-associated protein Basp1, thereby de-repressing nuclear factors WT1, Esrrb and Lin28a (Lin28) independent of Sox2. By manipulating this pathway, we identify three methods to generate iPSCs. Our results establish unbiased selection from autocrine combinatorial antibody libraries as a robust method to discover new biologics and uncover membrane-to-nucleus signaling pathways that regulate pluripotency and cell fate.
- Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.