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1. Resource-dependent biodiversity and potential multi-trophic interactions determine belowground functional trait stability

Author

Zhu, Lingyue, Chen, Yan, Sun, Ruibo, Zhang, Jiabao, Hale, Lauren, Dumack, Kenneth, Geisen, Stefan, Deng, Ye, Duan, Yinghua, Zhu, Bo, Li, Yan, Liu, Wenzhao, Wang, Xiaoyue, Griffiths, Bryan S., Bonkowski, Michael, Zhou, Jizhong, Sun, Bo, and Terrestrial Ecology (TE)

Subjects
Microbiology (medical), Ecology, Agroecosystem, Nutritional Status, Biodiversity, PE&RC, Soil biodiversity, Microbiology, Soil, Within trophic interactions, Medical Microbiology, Ecosystem functioning, Centre for Crop Systems Analysis, Life Science, Cross-trophic interactions, Biomass, Laboratory of Nematology, Laboratorium voor Nematologie, Ecosystem
Abstract

Background For achieving long-term sustainability of intensive agricultural practices, it is pivotal to understand belowground functional stability as belowground organisms play essential roles in soil biogeochemical cycling. It is commonly believed that resource availability is critical for controlling the soil biodiversity and belowground organism interactions that ultimately lead to the stabilization or collapse of terrestrial ecosystem functions, but evidence to support this belief is still limited. Here, we leveraged field experiments from the Chinese National Ecosystem Research Network (CERN) and two microcosm experiments mimicking high and low resource conditions to explore how resource availability mediates soil biodiversity and potential multi-trophic interactions to control functional trait stability. Results We found that agricultural practice-induced higher resource availability increased potential cross-trophic interactions over 316% in fields, which in turn had a greater effect on functional trait stability, while low resource availability made the stability more dependent on the potential within trophic interactions and soil biodiversity. This large-scale pattern was confirmed by fine-scale microcosm systems, showing that microcosms with sufficient nutrient supply increase the proportion of potential cross-trophic interactions, which were positively associated with functional stability. Resource-driven belowground biodiversity and multi-trophic interactions ultimately feedback to the stability of plant biomass. Conclusions Our results indicated the importance of potential multi-trophic interactions in supporting belowground functional trait stability, especially when nutrients are sufficient, and also suggested the ecological benefits of fertilization programs in modern agricultural intensification.

Published
2023

2. Soil protistology rebooted: 30 fundamental questions to start with

Author

Geisen, Stefan, Mitchell, Edward A.D., Wilkinson, David M., Adl, Sina, Bonkowski, Michael, Brown, Matthew W, Fiore-Donno, Anna Maria, Heger, Thierry J., Jassey, Vincent E.J., Krashevska, Valentyna, Lahr, Daniel J.G., Marcisz, Katarzyna, Mulot, Matthieu, Payne, Richard, Singer, David, Anderson, O. Roger, Charman, Dan J., Ekelund, Flemming, Griffiths, Bryan S., Rønn, Regin, Smirnov, Alexey, Bass, David, Belbahri, Lassaâd, Berney, Cédric, Blandenier, Quentin, Chatzinotas, Antonis, Clarholm, Marianne, Dunthorn, Micah, Feest, Alan, Fernández, Leonardo D., Foissner, Wilhelm, Fournier, Bertrand, Gentekaki, Eleni, Hájek, Michal, Helder, Johannes, Jousset, Alexandre, Koller, Robert, Kumar, Santosh, La Terza, Antonietta, Lamentowicz, Mariusz, Mazei, Yuri, Santos, Susana S., Seppey, Christophe V.W., Spiegel, Frederick W., Walochnik, Julia, Winding, Anne, Lara, Enrique, Sub Ecology and Biodiversity, Ecology and Biodiversity, Wageningen University and Research Centre [Wageningen] (WUR), Université de Neuchâtel (UNINE), Schlumberger-Doll Research, Schlumberger, University of Saskatchewan [Saskatoon] (U of S), Department of Terrestrial Ecology, Institut of Zoology, University of Cologne, Institute of Botany and Landscape Ecology, Universität Greifswald - University of Greifswald, Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Instituto de Biociências, Universidade de São Paulo, Laboratory of Wetland Ecology and Monitoring, Faculty of Geographical and Geological Sciences, Adam Mickiewicz University in Poznan (AMUP), Laboratory of Soil Biodiversity, Manchester Metropolitan University (MMU), Department of Biology, Northern Arizona University [Flagstaff], Crop and Soil Systems Research Group, Scotland's Rural College (SCUR), The Natural History Museum [London] (NHM), Laboratory of Soil Biology, Evolution des Protistes et Ecosystèmes Pélagiques (EPEP), Adaptation et diversité en milieu marin (ADMM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), University of Kaiserslautern [Kaiserslautern], Laboratoire de biodiversité du sol [Neuchâtel], Faculty of Computer Science, Dalhousie University [Halifax], Czech University of Life Sciences Prague, Johann-Friedrich Blumenbach Institut für Zoologie und Anthropologie, Georg-August-University [Göttingen], Laboratoire Agronomie et Environnement (LAE), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), French Institute of Pondichery, Laboratory of Wetland Ecology and Monitoring, Faculty of Geographical and Geological Sciences, Adam Mickiewicz University, Erasmus University Medical Center [Rotterdam] (Erasmus MC), Center for Pathophysiology, NERI, Sub Ecology and Biodiversity, Ecology and Biodiversity, Terrestrial Ecology (TE), Wageningen University and Research [Wageningen] (WUR), Department of Biological Sciences [Mississippi], University of Southern Mississippi (USM), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Adam Mickiewicz University in Poznań (UAM), Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York 10964 USA, Geography Department, College of Life and Environmental Sciences, University of Exeter, Scotland's Rural College (SRUC), University of Copenhagen = Københavns Universitet (KU), Department of Invertebrate Zoology, St Petersburg State University (SPbU), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences (SLU), Czech University of Life Sciences Prague (CZU), Forschungszentrum Jülich GmbH | Centre de recherche de Juliers, Helmholtz-Gemeinschaft = Helmholtz Association, Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Georg-August-University = Georg-August-Universität Göttingen, University of Copenhagen = Københavns Universitet (UCPH), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), and Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Université Fédérale Toulouse Midi-Pyrénées-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)

Subjects
0301 basic medicine, [SDV]Life Sciences [q-bio], Soil biology, Ecology (disciplines), Biodiversity, Soil Science, Functional diversity, Biology, Microbiology, 03 medical and health sciences, ddc:570, Microbial interactions, Soil protists, Ecosystem, Protozoa, Laboratorium voor Nematologie, ComputingMilieux_MISCELLANEOUS, 2. Zero hunger, Functional ecology, Ecology, Food web, 04 agricultural and veterinary sciences, 15. Life on land, PE&RC, Protistology, 030104 developmental biology, 13. Climate action, international, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Conservation biology, EPS, Laboratory of Nematology, Soil fertility
Abstract

Protists are the most diverse eukaryotes. These microbes are keystone organisms of soil ecosystems and regulate essential processes of soil fertility such as nutrient cycling and plant growth. Despite this, protists have received little scientific attention, especially compared to bacteria, fungi and nematodes in soil studies. Recent methodological advances, particularly in molecular biology techniques, have made the study of soil protists more accessible, and have created a resurgence of interest in soil protistology. This ongoing revolution now enables comprehensive investigations of the structure and functioning of soil protist communities, paving the way to a new era in soil biology. Instead of providing an exhaustive review, we provide a synthesis of research gaps that should be prioritized in future studies of soil protistology to guide this rapidly developing research area. Based on a synthesis of expert opinion we propose 30 key questions covering a broad range of topics including evolution, phylogenetics, functional ecology, macroecology, paleoecology, and methodologies. These questions highlight a diversity of topics that will establish soil protistology as a hub discipline connecting different fundamental and applied fields such as ecology, biogeography, evolution, plant-microbe interactions, agronomy, and conservation biology. We are convinced that soil protistology has the potential to be one of the most exciting frontiers in biology. (C) 2017 Elsevier Ltd. All rights reserved.

Published
2017

4. Connecting the Green and Brown Worlds: Allometric and Stoichiometric Predictability of Above- and Below-Ground Networks

Author

Mulder, Christian, Ahrestani, Farshid S., Bahn, Michael, Bohan, David, Bonkowski, Michael, Griffiths, Bryan S., Guicharnaud, Rannveig Anna, Kattge, Jens, Krogh, Paul Henning, Lavorel, Sandra, Lewis, Owen T., Mancinelli, Giorgio, Naeem, Shahid, Penuelas, Josep, Poorter, Hendrik, Reich, Peter B., Rossi, Loreto, Rusch, Graciela M., Sardans, Jordi, Wright, Ian J., Woodward, G., Bohan, D. A., C., Mulder, F. S., Ahrestani, M., Bahn, D. A., Bohan, M., Bonkowski, B. S., Griffithsk, R. A., Guicharnaud, J., Kattge, P., Henning Krogh, S., Lavorel, O. T., Lewi, Mancinelli, Giorgio, S., Naeem, J., Peñuela, H., Poorter, P. B., Reich, L., Rossi, G. M., Rusch, J., Sardan, I. J., Wright, National Institute for Public Health and the Environment [Bilthoven] (RIVM), Pennsylvania State University (Penn State), Penn State System, University of Innsbruck, Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, University of Cologne, Scotland's Rural College (SRUC), Commission of the European Communities, Max Planck Institute for Biogeochemistry (MPI-BGC), Max-Planck-Gesellschaft, Aarhus University [Aarhus], Laboratoire d'Ecologie Alpine (LECA), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Department of Zoology, University of Cambridge [UK] (CAM), Università del Salento, Columbia University [New York], Centre de Recerca Ecològica i Aplicacions Forestals - Centre for Ecological Research and Forestry Applications, Partenaires INRAE, Forschungszentrum Jülich GmbH | Centre de recherche de Juliers, Helmholtz-Gemeinschaft = Helmholtz Association, Western Sydney University, Department of Forest Resources, University of Minnesota [Twin Cities] (UMN), University of Minnesota System-University of Minnesota System, Department of Environmental Biology, University of Guelph, Norwegian Institute for Nature Research (NINA), Centre for Ecological Research and Forestry Applications (CREAF), Universitat Autònoma de Barcelona (UAB), and Macquarie University

Subjects
Edaphic food webs, Isotopic signatures in litter food webs, Evolution, [SDV]Life Sciences [q-bio], SOIL MICROBIAL BIOMASS, Above- and below-ground plant traits (TRY), Catalan Forest Inventory, Eutrophication, Foliar C:N:P ratios, Microbial C:N:P ratios, N deposition, Plasticity at the basal trophic level, Soil invertebrates and Zoocoenoses, Ecology, Evolution, Behavior and Systematics, Ecology, BODY-SIZE RELATIONSHIPS, ARBUSCULAR MYCORRHIZAL FUNGI, Behavior and Systematics, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, ECOLOGICAL COMMUNITY DESCRIPTION, LAND-USE CHANGE, CARBON ALLOCATION DYNAMICS, [SDE]Environmental Sciences, LEAF-LITTER DECOMPOSITION, PREDICTED CLIMATE-CHANGE, GENERAL QUANTITATIVE THEORY, N-P STOICHIOMETRY
Abstract

We examine the potential of trait-based parameters of taxa for linking above-ground and belowground ecological networks (hereafter ‘green’ and ‘brown’ worlds) to understand and predict community dynamics. This synthesis considers carbon, nitrogen and phosphorus-related traits, the abundance of component species and their size-distribution across trophic levels under different forms of management. We have analyzed existing and novel databases on plants, microbes and invertebrates that combine physico-chemical and biological information from (agro)ecosystems spanning the globe. We found (1) evidence that traits from above-ground and below-ground systems may be integrated in the same model and (2) a much greater than expected stoichiometric plasticity of plants and microbes which has implications for the entire food-web mass-abundance scaling. Nitrogen and phosphorus are primary basal resources (hence, drivers) and more retranslocation of P than of N from leaves will lead to higher N:P in the litter and soil organic matter. Thus, under nutrient-rich conditions, higher foliar concentrations of N and P are reflected by lower N:P in the brown litter, suggesting less P retranslocated than N. This apparent stoichiometric dichotomy between green and brown could result in shifts in threshold elemental ratios critical for ecosystem functioning. It has important implications for a general food-web model, given that resource C:N:P ratios are generally assumed to reflect environmental C:N:P ratios. We also provide the first evidence for large-scale allometric changes according to the stoichiometry of agroecosystems. Finally, we discuss insights that can be gained from integrating carbon and nitrogen isotope data into trait-based approaches, and address the origin of changes in Δ13C and Δ15N fractionation values in relation to consumer-resource body-mass ratios

Published
2016

5. Soil protistology rebooted: 30 fundamental questions to start with

Author

Rønn, Regin, Koller, Robert, Spiegel, Frederick W., Dunthorn, Micah, Payne, Richard, Ekelund, Flemming, Gentekaki, Eleni, Blandenier, Quentin, Belbahri, Lassaâd, Lahr, Daniel J.G., Mazei, Yuri, Lara, Enrique, Anderson, O. Roger, Fournier, Bertrand, La Terza, Antonietta, Seppey, Christophe V.W., Heger, Thierry J., Hájek, Michal, Fiore-Donno, Anna Maria, Clarholm, Marianne, Wilkinson, David M., Charman, Dan J., Helder, Johannes, Jassey, Vincent E.J., Santos, Susana S., Jousset, Alexandre, Chatzinotas, Antonis, Geisen, Stefan, Lamentowicz, Mariusz, Kumar, Santosh, Feest, Alan, Marcisz, Katarzyna, Mitchell, Edward A.D., Bass, David, Fernández, Leonardo D., Berney, Cédric, Bonkowski, Michael, Brown, Matthew W., Mulot, Matthieu, Walochnik, Julia, Griffiths, Bryan S., Singer, David, Adl, Sina, Krashevska, Valentyna, Smirnov, Alexey, Winding, Anne, and Foissner, Wilhelm

Subjects
2. Zero hunger, 13. Climate action, 15. Life on land, 580 Plants (Botany)
Abstract

Protists are the most diverse eukaryotes. These microbes are keystone organisms of soil ecosystems and regulate essential processes of soil fertility such as nutrient cycling and plant growth. Despite this, protists have received little scientific attention, especially compared to bacteria, fungi and nematodes in soil studies. Recent methodological advances, particularly in molecular biology techniques, have made the study of soil protists more accessible, and have created a resurgence of interest in soil protistology. This ongoing revolution now enables comprehensive investigations of the structure and functioning of soil protist communities, paving the way to a new era in soil biology. Instead of providing an exhaustive review, we provide a synthesis of research gaps that should be prioritized in future studies of soil protistology to guide this rapidly developing research area. Based on a synthesis of expert opinion we propose 30 key questions covering a broad range of topics including evolution, phylogenetics, functional ecology, macroecology, paleoecology, and methodologies. These questions highlight a diversity of topics that will establish soil protistology as a hub discipline connecting different fundamental and applied fields such as ecology, biogeography, evolution, plant-microbe interactions, agronomy, and conservation biology. We are convinced that soil protistology has the potential to be one of the most exciting frontiers in biology.

6. New frontiers in belowground ecology for plant protection from root-feeding insects

Author

Karley, Alison J., Schumann, Mario, Johnson, Scott N., Sonnemann, Illja, Hartley, Susan E., Griffiths, Bryan S., Frew, Adam, Robert, Christelle A. M., Rasmann, Sergio, and Benefer, Carly M.

Subjects
2. Zero hunger, 13. Climate action, fungi, food and beverages, 15. Life on land, 580 Plants (Botany)
Abstract

Herbivorous insect pests living in the soil represent a significant challenge to food security given their persistence, the acute damage they cause to plants and the difficulties associated with managing their populations. Ecological research effort into rhizosphere interactions has increased dramatically in the last decade and we are beginning to understand, in particular, the ecology of how plants defend themselves against soil-dwelling pests. In this review, we synthesise information about four key ecological mechanisms occurring in the rhizosphere or surrounding soil that confer plant protection against root herbivores. We focus on root tolerance, root resistance via direct physical and chemical defences, particularly via acquisition of silicon-based plant defences, integration of plant mutualists (microbes and entomopathogenic nematodes, EPNs) and the influence of soil history and feedbacks. Their suitability as management tools, current limitations for their application, and the opportunities for development are evaluated. We identify opportunities for synergy between these aspects of rhizosphere ecology, such as mycorrhizal fungi negatively affecting pests at the root-interface but also increasing plant uptake of silicon, which is also known to reduce herbivory. Finally, we set out research priorities for developing potential novel management strategies.

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