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The relaxation time spectrum in blends of architecturally different polymers with strongly disperse time scales has been investigated by their time-dependent small angle neutron scattering signal after a fast uniaxial step strain. Model-hyperbranched dendrimeric polymers of second generation, dilutely dispersed within linear homopolymer matrices, acted like sensitive probes for structurally, though not firmly, established features of the tube model for bidisperse melts. We showed that the equilibration time of the linear matrix determines the size of the fluctuations that the outer and inner arms experience. Within a random phase approximation (RPA) treatment, which accounts for the different degrees of freedom inherent to the broad time scales, the observed loss of anisotropy with time was described in terms of two parameters only, namely the tube diameter and the fraction of relaxed arms of the minority component. The scattering data reveal details of mechanisms, which cannot be extracted from but determine the macroscopic flow properties. At intermediate times, a tube relaxation process was detected. At long times, the dynamic dilution model is confirmed. © 2013 American Chemical Society.

The radii of giant planets, as measured from transit observations, may vary with wavelength due to Rayleigh scattering or variations in opacity. Such an effect is predicted to be large enough to detect using ground-based observations at multiple wavelengths. We present defocussed photometry of a transit in the HAT-P-5 system, obtained simultaneously through Stromgren u, Gunn g and r, and Johnson I filters. Two more transit events were observed through a Gunn r filter. We detect a substantially larger planetary radius in u, but the effect is greater than predicted using theoretical model atmospheres of gaseous planets. This phenomenon is most likely to be due to systematic errors present in the u-band photometry, stemming from variations in the transparency of Earth's atmosphere at these short wavelengths. We use our data to calculate an improved orbital ephemeris and to refine the measured physical properties of the system. The planet HAT-P-5b has a mass of 1.06 +/- 0.11 +/- 0.01 Mjup and a radius of 1.252 +/- 0.042 +/- 0.008 Rjup (statistical and systematic errors respectively), making it slightly larger than expected according to standard models of coreless gas-giant planets. Its equilibrium temperature of 1517 +/- 29 K is within 60K of that of the extensively-studied planet HD 209458b., Comment: Version 2 corrects the accidental omission of one author in the arXiv metadata. Accepted for publication in MNRAS. 9 pages, 4 figures, 7 tables. The properties of HAT-P-5 have been added to the Transiting Extrasolar Planet Catalogue at http://www.astro.keele.ac.uk/~jkt/tepcat/

Hermaphrodite systems offer unique opportunities to study sexual differentiation, due to their high degree of sexual plasticity and to the fact that, unlike gonochoristic systems, the process is not confined to an early developmental stage. In protandric shrimp species, such as Hippolyte inermis and Pandalus platyceros, male differentiation is followed by transformation to femaleness during adulthood. The mechanisms controlling sexual differentiation have not been fully elucidated in crustaceans, but a key role has been attributed to the insulin-like hormone (IAG) produced by the androgenic gland (AG), a crustacean masculine endocrine organ. To uncover further transcriptomic toolkit elements affecting the sexual differentiation of H. inermis, we constructed eye and whole body RNA libraries of four representative stages during its protandric life cycle (immature, male, young female and mature female). The body libraries contained transcripts related to the reproductive system, among others, while the eye libraries contained transcripts related to the X-organ-sinus gland, a central endocrine complex that regulates crustacean reproduction. Binary pattern analysis, performed to mine for genes expressed differentially between the different life stages, yielded 19,605 and 6,175 transcripts with a specific expression pattern in the eye and body, respectively. Prominent sexually biased transcriptomic patterns were recorded for the IAG and vitellogenin genes, representing, respectively, a key factor within the masculine IAG-switch, and a precursor of the yolk protein, typical of feminine reproductive states. These patterns enabled the discovery of novel putative protein-coding transcripts exhibiting sexually biased expression in the H. inermis body and eye transcriptomes of males and females. Homologs to the above novel genes have been found in other decapod crustaceans, and a comparative study, using previously constructed transcriptomic libraries of another protandric shrimp, P. platyceros, showed similar sexually biased results, supporting the notion that such genes, mined from the H. inermis transcriptome, may be universal factors related to reproduction and sexual differentiation and their control in other crustaceans. This study thus demonstrates the potential of transcriptomic studies in protandric species to uncover unexplored layers of the complex crustacean sex-differentiation puzzle.

Physiological effects of algal metabolites is a key step for the isolation of interesting bioactive compounds. Invertebrate grazers may be fed on live diatoms or dried, pelletized, and added to compound feeds. Any method may reveal some shortcomings, due to the leaking of wound-activated compounds in the water prior to ingestion. For this reason, encapsulation may represent an important step of bioassay-guided fractionation, because it may assure timely preservation of the active compounds. Here we test the effects of the inclusion in alginate (biocompatible and non-toxic delivery system) matrices to produce beads containing two benthic diatoms for sea urchin Paracentrotus lividus feeding. In particular, we compared the effects of a diatom whose influence on P. lividus was known (Nanofrustulum shiloi) and those of a diatom suspected to be harmful to marine invertebrates, because it is often present in blooms (Striatella unipunctata). Dried N. shiloi and S. unipunctata were offered for one month after encapsulation in alginate hydrogel beads and the larvae produced by sea urchins were checked for viability and malformations. The results indicated that N. shiloi, already known for its toxigenic effects on sea urchin larvae, fully conserved its activity after inclusion in alginate beads. On the whole, benthic diatoms affected the embryogenesis of P. lividus, altering the expression of several genes involved in stress response, development, skeletogenesis and detoxification processes. Interactomic analysis suggested that both diatoms activated a similar stress response pathway, through the up-regulation of hsp60, hsp70, NF-κB, 14-3-3 ε and MDR1 genes. This research also demonstrates that the inclusion in alginate beads may represent a feasible technique to isolate diatom-derived bioactive compounds.

Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) represent the most common pollutants in the marine sediments. Previous investigations demonstrated short-term sublethal effects of sediments polluted with both contaminants on the sea urchin Paracentrotus lividus after 2 months of exposure in mesocosms. In particular, morphological malformations observed in P. lividus embryos deriving from adults exposed to PAHs and PCBs were explained at molecular levels by de novo transcriptome assembly and real-time qPCR, leading to the identification of several differentially expressed genes involved in key physiological processes. Here, we extensively explored the genes involved in the response of the sea urchin P. lividus to PAHs and PCBs. Firstly, 25 new genes were identified and interactomic analysis revealed that they were functionally connected among them and to several genes previously defined as molecular targets of response to the two pollutants under analysis. The expression levels of these 25 genes were followed by Real Time qPCR, showing that almost all genes analyzed were affected by PAHs and PCBs. These findings represent an important further step in defining the impacts of slight concentrations of such contaminants on sea urchins and, more in general, on marine biota, increasing our knowledge of molecular targets involved in responses to environmental stressors.

We present an investigation into the dynamic relaxation mechanisms of a polybutadiene blend composed of a four-arm star (10 wt. %) and a linear polymer matrix in the presence of an applied shear flow. Our focus was the response of the star polymer, which cannot be unambiguously assessed via linear viscoelastic measurements since the signature of the star polymer can barely be detected due to the dominant contribution of the linear matrix. By utilizing small-angle neutron scattering (SANS) coupled with a Couette shear device and a deuterated matrix polymer, we investigated the dynamics of the minority star component of the blend. Our results confirm that the stars deform anisotropically with increasing shear rate. We have compared the SANS data with predictions from the well-established scattering adaptation of the state-of-the-art tube model for entangled linear polymer melts undergoing shear, i.e., Graham, Likhtman, Milner, and McLeish (GLaMM) approach, appropriately modified following earlier studies in order to apply to the star. This modified model, GLaMM-R, includes the physics necessary to understand stress relaxation in both the linear and nonlinear flow regimes, i.e., contour length fluctuations, constraint release, convective constraint release, and chain retraction. The full scattering signal is due to the minority star component and, although the contribution of the linear chains is hidden from the neutron scattering, they still influence the star polymer molecular dynamics, with the applied shear rate ranging from approximately 8 to 24 s−1, below the inverse relaxation time of the linear component. This study provides another confirmation that the combination of rheology and neutron scattering is an indispensable tool for investigating the nonlinear dynamics of complex polymeric systems.

Oxylipins are diatom-derived secondary metabolites, deriving from the oxidation of polyunsatured fatty acids that are released from cell membranes after cell damage or senescence of these single-celled algae. Previous results revealed harmful toxic effects of polyunsaturated aldehydes (PUAs) and hydroxyacids (HEPEs) on sea urchin Paracentrotus lividus embryonic development by testing individual compounds and mixtures of the same chemical group. Here, we investigated the combined effects of these compounds on sea urchin development at the morphological and molecular level for the first time. Our results demonstrated that oxylipin mixtures had stronger effects on sea urchin embryos compared with individual compounds, confirming that PUAs induce malformations and HEPEs cause developmental delay. This harmful effect was also confirmed by molecular analysis. Twelve new genes, involved in stress response and embryonic developmental processes, were isolated from the sea urchin P. lividus, these genes were found to be functionally interconnected with 11 genes already identified as a stress response of P. lividus embryos to single oxylipins. The expression levels of most of the analyzed genes targeted by oxylipin mixtures were involved in stress, skeletogenesis, development/differentiation, and detoxification processes. This work has important ecological implications, considering that PUAs and HEPEs represent the most abundant oxylipins in bloom-forming diatoms, opening new perspectives in understanding the molecular pathways activated by sea urchins exposed to diatom oxylipins.

Oxylipins such as polyunsaturated aldehydes (PUAs) and hydroxyacids (HEPEs) are signaling molecules derived from the oxidation of polyunsaturated fatty acids. They are common in diatoms that constitute a major group of microalgae in freshwater and oceanic ecosystems. Although HEPEs represent the most common oxylipins produced by diatoms, little information is available on their effects on marine invertebrates, and most of the information has been obtained by testing individual HEPEs. Our previous studies reported that four hydroxyacids, i.e., 5-, 9-, 11-, and 15-HEPE, were able to induce malformations and a marked developmental delay in sea urchin Paracentrotus lividus embryos, which had not been reported for other oxylipins. Here, we tested a mixture of 5-, 9-, 11-, and 15-HEPE at different concentrations for the first time. The results showed that mixtures of HEPEs have synergistic effects that are much more severe compared to those of individual HEPEs: The HEPE mixtures induced malformations in sea urchin embryos at lower concentrations. Increasing HEPE mixture concentrations induced a marked increase in the number of delayed embryos, until all embryos were delayed at the highest concentration tested. At the molecular level, the HEPE mixtures induced variations in the expression of 50 genes involved in different functional processes, mainly down-regulating these genes at the earliest stages of embryonic development. These findings are ecologically significant, considering that during diatom blooms, sea urchins could accumulate HEPEs in concentrations comparable to those tested in the present study.

Marine sponges are an excellent source of bioactive secondary metabolites for pharmacological applications. In the present study, we evaluated the chemistry, cytotoxicity and metabolomics of an organic extract from the Mediterranean marine sponge Geodia cydonium, collected in coastal waters of the Gulf of Naples. We identified an active fraction able to block proliferation of breast cancer cell lines MCF-7, MDA-MB231, and MDA-MB468 and to induce cellular apoptosis, whereas it was inactive on normal breast cells (MCF-10A). Metabolomic studies showed that this active fraction was able to interfere with amino acid metabolism, as well as to modulate glycolysis and glycosphingolipid metabolic pathways. In addition, the evaluation of the cytokinome profile on the polar fractions of three treated breast cancer cell lines (compared to untreated cells) demonstrated that this fraction induced a slight anti-inflammatory effect. Finally, the chemical entities present in this fraction were analyzed by liquid chromatography high resolution mass spectrometry combined with molecular networking.