1. Characterization of the extended substrate spectrum of the class A β-lactamase CESS-1 from Stenotrophomonas sp. and structure-based investigation into its substrate preference.
- Author
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Jeong, Bo-Gyeong, Kim, Myeong-Yeon, Jeong, Chang-Sook, Do, Hackwon, Hwang, Jisub, Lee, Jun Hyuck, and Cha, Sun-Shin
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PENICILLIN G , *X-ray crystallography , *MEROPENEM , *CEPHALOSPORINS , *AMPICILLIN - Abstract
• CESS-1 is a class A β-lactamase hydrolysing penicillins and cephalosporins • CESS-1 displays the highest hydrolytic activity toward cefaclor • CESS-1 distinguishes cefaclor, cephalexin, and ampicillin with similar structures • Crystal structures of CESS-1 acylated by the three substrates were determined • The structural basis for the substrate discrimination was revealed at the atomic level Stenotrophomonas spp. intrinsically resistant to many β-lactam antibiotics are found throughout the environment. CESS-1 identified in Stenotrophomonas sp. KCTC 12332 is an uncharacterized class A β-lactamase. The goal of this study was to reveal biochemical and structural characteristics of CESS-1. The hydrolytic activities of CESS-1 towards penicillins (penicillin G and ampicillin), cephalosporins (cephalexin, cefaclor, and cefotaxime), and carbapenems (imipenem and meropenem) was spectrophotometrically monitored. Structural information on E166Q mutants of CESS-1 acylated by cefaclor, cephalexin, or ampicillin were determined by X-ray crystallography. CESS-1 displayed hydrolytic activities toward penicillins and cephalosporins, with negligible activity toward carbapenems. Although cefaclor, cephalexin, and ampicillin have similar structures with identical R1 side chains, the catalytic parameters of CESS-1 toward them were distinct. The k cat values for cefaclor, cephalexin, and ampicillin were 1249.6 s-1, 204.3 s-1, and 69.8 s-1, respectively, with the accompanying K M values of 287.6 μM, 236.7 μM, and 28.8 μM, respectively. CESS-1 was able to discriminate between cefaclor and cephalexin with a single structural difference at C3 position: –Cl (cefaclor) and –CH 3 (cephalexin). Structural comparisons among three E166Q mutants of CESS-1 acylated by cefaclor, cephalexin, or ampicillin, revealed that cooperative positional changes in the R1 side chain of substrates and their interaction with the β5-β6 loop affect the distance between Asn170 and the deacylating water at the acyl-enzyme intermediate state. This is directly associated with the differential hydrolytic activities of CESS-1 toward the three structurally similar β-lactam antibiotics. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2024
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