1. 先天性肺气道畸形患儿病变组织中差异表达基因的筛选 及生物学功能分析.
- Author
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张刚, 刘丹丹, 蔡纯, 李潇, 曾慧仪, 娄蕾, 闫宪刚, and 俞钢
- Abstract
Objective: To screen the differentially expressed genes (DEGs) in lesion tissues of children with congenital pulmonary airway malformation (CPAM) and to analyze their biological functions. Methods The pathological tissues and the adjacent tissues were collected from 5 children with CPAM through the thoracoscopic surgery. The RNA-seq libraries were established by Total RNA-seq (H/M/R) Library Prep Kit for Illumina® separately and we obtained their gene expression sequences by RSEM software, which were normalized by TMM method to obtain the effective sequences. After removing abnormal samples through principal component analysis, DEGs of CPAM were screened out by the edgeR software, and then GO function enrichment analysis and KEGG signal pathway analysis were performed by using cluster Profiler of the R software. Results Totally 1 063 DEGs (860 up-regulated genes and 203 down-regulated genes) were screened out after we eliminated 1 sample from 10 RNA-Seq libraries for abnormal expression. GO function enrichment analysis results showed that the cellular component was mainly located in axoneme, motile cilium, microtubule associated complex, apical part of cell, etc., the molecular function mainly included tubulin binding, ATPase activity, motor activity, microtubule binding, microtubule motor activity, etc., and the biological process mainly involved cilium organization, cilium assembly, microtubule-based movement, cilium movement, cilium and flagellum-dependent cell motility, etc. KEGG signaling pathway analysis results showed that DEGs were involved in the regulation of PI3K-Akt signaling pathway, vascular smooth muscle contraction, fluid shear stress and atherosclerosis, etc. Conclusion: Compared with CPAM adjacent tissues, there are 1 063 DEGs in CPAM lesion tissues, which are related to the formation and degeneration of the cilia, and participate in multiple signaling pathways related to the lung development. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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