50 results on '"Raoult, Didier"'
Search Results
2. Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov.
- Author
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Kokcha, Sahare, Mishra, Ajay Kumar, Lagier, Jean-Christophe, Million, Matthieu, Leroy, Quentin, Raoult, Didier, and Fournier, Pierre-Edouard
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- 2012
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3. Non contiguous-finished genome sequence and description of Microbacterium gorillae sp. nov.
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Hadjadj, Linda, Rathored, Jaishriram, Keita, Mamadou Bhoye, Michelle, Caroline, Levasseur, Anthony, Raoult, Didier, Fournier, Pierre-Edouard, Rolain, Jean-Marc, and Bittar, Fadi
- Subjects
MICROBACTERIUM ,GORILLA (Genus) ,NUCLEOTIDE sequencing ,GRAM-positive bacteria ,PHENOTYPES ,NUCLEIC acid hybridization - Abstract
Strain G3
T (CSUR P207 = DSM 26203) was isolated from the fecal sample of a wild gorilla (Gorilla gorilla subsp gorilla) from Cameroon. It is a Gram-positive, facultative anaerobic short rod. This strain exhibits a 16S rRNA sequence similarity of 98.2% with Microbacterium thalassium, the closest validly published Microbacterium species and member of the family Microbacteriaceae. Moreover, it shows a low MALDI-TOF-MS score (1.1 to 1.3) that does not allow any identification. Thus, it is likely that this strain represents a new species. Here we describe the phenotypic features of this organism, the complete genome sequence and annotation. The 3,692,770 bp long genome (one chromosome but no plasmid) contains 3,505 protein-coding and 61 RNA genes, including 4 rRNA genes. In addition, digital DNA-DNA hybridization values for the genome of the strain G3T against the closest Microbacterium genomes range between 19.7 to 20.5, once again confirming its new status as a new species. On the basis of these polyphasic data, consisting of phenotypic and genomic analyses, we propose the creation of Microbacterium gorillae sp. nov. that contains the strain G3T . [ABSTRACT FROM AUTHOR]- Published
- 2016
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4. High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov.
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Lo, Cheikh Ibrahima, Sankar, Senthil Alias, Fall, Bécaye, Sambe-Ba, Bissoume, Diawara, Silman, Gueye, Mamadou Wague, Mediannikov, Oleg, Blanc-Tailleur, Caroline, Wade, Boubacar, Raoult, Didier, Fournier, Pierre-Edouard, and Fenollar, Florence
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HAEMOPHILUS ,NUCLEOTIDE sequencing ,ASCITIC fluids ,RIBOSOMAL RNA ,PASTEURELLACEAE ,MATRIX-assisted laser desorption-ionization ,WOMEN patients - Abstract
Strain FF7
T was isolated from the peritoneal fluid of a 44-year-old woman who suffered from pelvic peritonitis. This strain exhibited a 16S rRNA sequence similarity of 94.8% 16S rRNA sequence identity with Haemophilus parasuis, the phylogenetically closest species with a name with standing in nomenclature and a poor MALDI-TOF MS score (1.32 to 1.56) that does not allow any reliable identification. Using a polyphasic study made of phenotypic and genomic analyses, strain FF7T was a Gram-negative, facultatively anaerobic rod and member of the family Pasteurellaceae. It exhibited a genome of 2,442,548 bp long genome (one chromosome but no plasmid) contains 2,319 protein-coding and 67 RNA genes, including 6 rRNA operons. On the basis of these data, we propose the creation of Haemophilus massiliensis sp. nov. with strain FF7T (= CSUR P859 = DSM 28247) as the type strain. [ABSTRACT FROM AUTHOR]- Published
- 2016
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5. Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants.
- Author
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Aghnatios, Rita, Cayrou, Caroline, Garibal, Marc, Robert, Catherine, Azza, Said, Raoult, Didier, and Drancourt, Michel
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GENOMES ,PEPTIDOGLYCANS ,CHROMOSOMES ,RIBOSOMAL RNA ,HYPOTHETICAL particles ,CULTURE media (Biology) - Abstract
Gemmata massiliana is a new Planctomycetes bacterium isolated from a hospital water network in France, using a new culture medium. It is an aerobic microorganism with optimal growth at pH 8, at 30 °C and salinity ≤ 1.25 % NaCl. G. massiliana is resistant to β-lactam antibiotics, due to lack of peptidoglycan in its cell wall. G. massiliana shares a 97 % 16S rRNA gene sequence similarity with the nearest species, Gemmata obscuriglobus; and 99 % similarity with unnamed soil isolates . Its 9,249,437-bp genome consists in one chromosome and no detectable plasmid and has a 64.07 % G + C content, 32.94 % of genes encoding for hypothetical proteins. The genome contains an incomplete 19.6-kb phage sequence, 26 CRISPRs, 3 CAS and 15 clusters of secondary metabolites. G. massiliana genome increases knowledge of a poorly known world of bacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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6. Genome sequence and description of Pantoea septica strain FF5.
- Author
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Lo, Cheikh, Padhmanabhan, Roshan, Mediannikov, Oleg, Nguyen, Thi, Raoult, Didier, Fournier, Pierre-Edouard, and Fenollar, Florence
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ENTEROBACTERIACEAE ,PANTOEA ,GENOMES ,GENES ,CHROMOSOMES - Abstract
Strain FF5 was isolated from the skin flora of a healthy Senegalese 35-year-old woman. This strain was identified as belonging to the species Pantoea septica based on rpoB sequence identity of 99.7 % with Pantoea septica strain LMG 5345 and a highest MALDI-TOF-MS score of 2.3 with Pantoea septica. Like P. septica, this FF5 strain is a Gram-negative, aerobic, motile, and rod-shaped bacterium. Currently, 17 genomes have been sequenced within the genus Pantoea but none for Pantoea septica. Herein, we compared the genomic properties of strain FF5 to those of other species within the genus Pantoea. The genome of this strain is 4,548,444 bp in length (1 chromosome, no plasmid) with a G + C content of 59.1 % containing 4125 protein-coding and 68 RNA genes (including 2 rRNA operons). We also performed an extensive phenotypic analysis showing new phenotypic characteristics such as the production of alkaline phosphatase, acid phosphatase and naphthol-AS-BI-phosphohydrolase. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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7. Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut.
- Author
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Lagier, Jean-Christophe, Khelaifia, Saber, Azhar, Esam, Croce, Olivier, Bibi, Fehmida, Jiman-Fatani, Asif, Yasir, Muhammad, Helaby, Huda, Robert, Catherine, Fournier, Pierre-Edouard, and Raoult, Didier
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HALOBACTERIUM ,BACTERIAL genomes ,GUT microbiome ,MATRIX-assisted laser desorption-ionization ,MEDICAL microbiology ,GENETIC code - Abstract
Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1, whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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8. Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov.
- Author
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Merhej, Vicky, Pfleiderer, Anne, Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Michelle, Caroline, Raoult, Didier, and Fournier, Pierre-Edouard
- Abstract
Clostridium ihumii strain AP5 sp. nov. is a new species within the genus Clostridium. This strain, whose genome is described here, was isolated from the stool sample of a 21-year-old French Caucasian female with anorexia nervosa. C. ihumii is a Gram-positive, anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,433,668 bp long genome contains 4,076 protein-coding and 85 RNA genes, including 9 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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- View/download PDF
9. Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov.
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Bittar, Fadi, Bibi, Fehmida, Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Azhar, Esam I., Jiman-Fatani, Asif A., Al-Ghamdi, Ahmed K., Ti Thien Nguyen, Yasir, Muhammad, Fournier, Pierre-Edouard, and Raoult, Didier
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BACILLUS genetics ,OVERWEIGHT men ,FECAL analysis ,NUCLEIC acid hybridization ,NUCLEOTIDE sequencing - Abstract
Strain JCE
T was isolated from the fecal sample of a 24-year-old obese man living in Jeddah, Saudi Arabia. It is an aerobic, Gram-positive, rod-shaped bacterium. This strain exhibits a 16S rRNA nucleotide sequence similarity of 97.5% with Bacillus niacini, the phylogenetically closest species with standing nomenclature. Moreover, the strain JCET presents many phenotypic differences, when it is compared to other Bacillus species, and shows a low MALDI-TOF Mass Spectrometry score that does not allow any identification. Thus, it is likely that this strain represents a new species. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,762,944 bp long genome (1 chromosome but no plasmid) contains 4,654 protein-coding and 98 RNAs genes, including 92 tRNA genes. The strain JCET differs from most of the other closely Bacillus species by more than 1% in G + C content. In addition, digital DNA-DNA hybridization values for the genome of the strain JCET against the closest Bacillus genomes range between 19.5 to 28.1, that confirming again its new species status. On the basis of these polyphasic data made of phenotypic and genomic analyses, we propose the creation of Bacillus jeddahensis sp. nov. that contains the strain JCET . [ABSTRACT FROM AUTHOR]- Published
- 2015
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10. Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium.
- Author
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Pagnier, Isabelle, Croce, Olivier, Robert, Catherine, Raoult, Didier, and Scola, Bernard
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GENOMES ,RIBOSOMAL RNA ,GENES ,PROTEINS ,BIOMOLECULES - Abstract
Fenollaria massiliensis strain 9401234, is the type strain of Fenollaria massiliensis gen. nov., sp. nov., a new species within a new genus Fenollaria. This strain, whose genome is described here, was isolated from an osteoarticular sample. F. massiliensis strain 9401234 is an obligate anaerobic Gram-negative bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1.71 Mbp long genome exhibits a G+C content of 34.46% and contains 1,667 protein-coding and 30 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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11. Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium.
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Cassir, Nadim, Croce, Olivier, Pagnier, Isabelle, Benamar, Samia, Couderc, Carine, Robert, Catherine, Raoult, Didier, and Scola, Bernard
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BACTEROIDACEAE ,BIOLOGICAL classification ,GENETICS ,BACTEROIDES ,GENOMES - Abstract
Bacteroides neonati strain MS4, is the type strain of Bacteroides neonati sp. nov., a new species within the genus Bacteroides. This strain, whose genome is described here, was isolated from a premature neonate stool sample. B. neonati strain MS4 is an obligate anaerobic Gram-negative bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5.03 Mbp long genome exhibits a G+C content of 43.53% and contains 4,415 protein-coding and 91 RNA genes, including 9 rRNA genes. [ABSTRACT FROM AUTHOR]
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- 2014
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12. Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae.
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Keita, Mamadou, Padhmanabhan, Roshan, Caputo, Aurélia, Robert, Catherine, Delaporte, Eric, Raoult, Didier, Fournier, Pierre-Edouard, and Bittar, Fadi
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GENOMES ,TRANSFER RNA ,PLASMIDS ,CYTOPLASMIC inheritance ,GENETIC vectors - Abstract
Strain G5 gen. nov., sp. nov. is the type strain of Gorillibacterium massiliense, a newly proposed genus within the family Paenibacillaceae. This strain, whose genome is described here, was isolated in France from a stool sample of a wild Gorilla gorilla subsp. gorilla from Cameroon. G. massiliense is a facultatively anaerobic, Gram negative rod. Here we describe the features of this bacterium, together with the complete genome sequence and annotation. The 5,546,433 bp long genome (1 chromosome but no plasmid) contains 5,145 protein-coding and 76 RNA genes, including 69 tRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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13. Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1.
- Author
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Edouard, Sophie, Sankar, Senthil, Dangui, Nicole, Lagier, Jean-Christophe, Michelle, Caroline, Raoult, Didier, and Fournier, Pierre-Edouard
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GENOMES ,RIBOSOMAL RNA ,GENES ,PROTEINS ,BIOMOLECULES - Abstract
Nesterenkonia massiliensis sp. nov., strain NP1, is the type strain of Nesterenkonia massiliensis sp. nov., a new species within the genus Nesterenkonia. This strain, whose genome is described here, was isolated from the feces of a 32-year-old French woman suffering from AIDS and living in Marseille. Nesterenkonia massiliensis is a Gram-positive aerobic coccus. Here, we describe the features of this bacterium, together with the complete genome sequencing and annotation. The 2,726,371 bp long genome (one chromosome but no plasmid) contains 2,663 protein-coding and 51 RNA genes, including 1 rRNA operon. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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14. Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov.
- Author
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Edouard, Sophie, Bibi, Fehmida, Dhamodharan, Ramasamy, Lagier, Jean-Christophe, Azhar, Esam, Robert, Catherine, Caputo, Aurelia, Yasir, Muhammad, Jiman-Fatani, Asif, Alawi, Maha, Fournier, Pierre-Edouard, and Raoult, Didier
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CORYNEBACTERIUM diseases ,GENOMES ,CHROMOSOMES ,RNA ,GENES ,CATTLE - Abstract
Corynebacterium jeddahense sp. nov., strain JCB, is the type strain of Corynebacterium jeddahense sp. nov., a new species within the genus Corynebacterium. This strain, whose genome is described here, was isolated from fecal flora of a 24-year-old Saudi male suffering from morbid obesity. Corynebacterium jeddahense is a Gram-positive, facultative anaerobic, nonsporulating bacillus. Here, we describe the features of this bacterium, together with the complete genome sequencing and annotation, and compare it to other member of the genus Corynebacterium. The 2,472,125 bp-long genome (1 chromosome but not plasmid) contains 2,359 protein-coding and 53 RNA genes, including 1 rRNA operon. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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15. Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov.
- Author
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Ramasamy, Dhamodaran, Dubourg, Gregory, Robert, Catherine, Caputo, Aurelia, Papazian, Laurent, Raoult, Didier, and Fournier, Pierre-Edouard
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GENOMES ,RIBOSOMAL RNA ,PROTEINS ,BIOMOLECULES ,GENETICS - Abstract
Enorma timonensis strain GD5 sp. nov., is the type strain of E. timonensis sp. nov., a new member of the genus Enorma within the family Coriobacteriaceae. This strain, whose genome is described here, was isolated from the fecal flora of a 53-year-old woman hospitalized for 3 months in an intensive care unit. E. timonensis is an obligate anaerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,365,123 bp long genome (1 chromosome but no plasmid) contains 2,060 protein-coding and 52 RNA genes, including 4 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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16. Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov.
- Author
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Lagier, Jean-Christophe, Bibi, Fehmida, Ramasamy, Dhamodharan, Azhar, Esam, Robert, Catherine, Yasir, Muhammad, Jiman-Fatani, Asif, Alshali, Khalid, Fournier, Pierre-Edouard, and Raoult, Didier
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CLOSTRIDIUM toxins ,BACILLACEAE ,CLOSTRIDIA ,CLOSTRIDIUM ,GENOMES - Abstract
Clostridium jeddahense strain JCD (= CSUR P693 = DSM 27834) is the type strain of C. jeddahense sp. nov. This strain, whose genome is described here, was isolated from the fecal flora of an obese 24 year-old Saudian male (BMI=52 kg/m). Clostridium jeddahense strain JCD is an obligate Gram-positive bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,613,503 bp long genome (1 chromosome, no plasmid) exhibits a G+C content of 51.95% and contains 3,462 protein-coding and 53 RNA genes, including 4 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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- View/download PDF
17. Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.
- Author
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Keita, Mamadou, Padhmananabhan, Roshan, Caputo, Aurélia, Robert, Catherine, Delaporte, Eric, Raoult, Didier, Fournier, Pierre-Edouard, and Bittar, Fadi
- Subjects
ANAEROBIC bacteria ,PAENIBACILLUS ,GENOMES ,CHROMOSOMES ,CELL nuclei - Abstract
Strain G1 sp. nov. is the type strain of Paenibacillus gorillae a newly proposed species within the genus Paenibacillus. This strain, whose genome is described here, was isolated in France from the fecal sample of a wild western lowland gorilla from Cameroon. P. gorillae is a facultative anaerobic, Gram-negative, rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,257,967 bp long genome (one chromosome but no plasmid) contains 5,856 protein-coding and 62 RNAs genes, including 60 tRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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18. Genome sequence and description of Corynebacterium ihumii sp. nov.
- Author
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Padmanabhan, Roshan, Dubourg, Grégory, Lagier, Jean-Christophe, Couderc, Carine, Michelle, Caroline, Raoult, Didier, and Fournier, Pierre-Edouard
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CORYNEBACTERIUM diseases ,CORYNEBACTERIACEAE ,GENOMES ,RNA ,GENES ,CATTLE - Abstract
Corynebacterium ihumii strain GD7 sp. nov. is proposed as the type strain of a new species, which belongs to the family Corynebacteriaceae of the class Actinobacteria. This strain was isolated from the fecal flora of a 62 year-old male patient, as a part of the culturomics study. _Corynebacterium ihumii is a Gram positive, facultativly anaerobic, nonsporulating bacillus. Here, we describe the features of this organism, together with the high quality draft genome sequence, annotation and the comparison with other member of the genus Corynebacteria. C. ihumii genome is 2,232,265 bp long (one chromosome but no plasmid) containing 2,125 protein-coding and 53 RNA genes, including 4 rRNA genes. The whole-genome shotgun sequence of _Corynebacterium ihumii strain GD7 sp. nov has been deposited in EMBL under accession number GCA_000403725. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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19. Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov.
- Author
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Padmanabhan, Roshan, Dubourg, Gregory, Lagier, Jean-Christophe, Nguyen, Thi-Thien, Couderc, Carine, Rossi-Tamisier, Morgane, Caputo, Aurelia, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GENOMES ,CHROMOSOMES ,PROTEINS ,BIOMOLECULES ,ORGANIC compounds - Abstract
Collinsella massiliensis strain GD3 is the type strain of Collinsella massiliensis sp. nov., a new species within the genus Collinsella. This strain, whose genome is described here, was isolated from the fecal flora of a 53-year-old French Caucasoid woman who had been admitted to intensive care unit for Guillain-Barré syndrome. Collinsella massiliensis is a Gram-positive, obligate anaerobic, non motile and non sporulating bacillus. Here, we describe the features of this organism, together with the complete genome sequence and annotation. The genome is 2,319,586 bp long (1 chromosome, no plasmid), exhibits a G+C content of 65.8% and contains 2,003 protein-coding and 54 RNA genes, including 1 rRNA operon. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
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20. Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.
- Author
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Pfleiderer, Anne, Mishra, Ajay, Lagier, Jean-Christophe, Robert, Catherine, Caputo, Aurelia, Raoult, Didier, and Fournier, Pierre-Edouard
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GENOMES ,RIBOSOMAL RNA ,ANOREXIA nervosa ,EATING disorders ,BODY image - Abstract
Alistipes ihumii strain AP11 sp. nov. is the type strain of A. ihumii sp. nov., a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 21-year-old French Caucasian female, suffering from a severe restrictive form of anorexia nervosa since the age of 12 years. A. ihumii is a Gram-negative anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,753,264 bp long genome (one chromosome but no plasmid) contains 2,254 protein-coding and 47 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
21. Genome sequence and description of Bacteroides timonensis sp. nov.
- Author
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Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Rossi-Tamisier, Morgane, Pfleiderer, Anne, Michelle, Caroline, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
BACTEROIDACEAE ,EUBACTERIALES ,BACTEROIDES ,RIBOSOMAL RNA ,ANOREXIA nervosa - Abstract
Bacteroides timonensis strain AP1 (= CSUR P194 = DSM 26083) is the type strain of B. timonensis sp. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 21-year-old French Caucasoid female who suffered from severe anorexia nervosa. Bacteroides timonensis is a Gram-negative, obligate anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 7,130,768 bp long genome (1 chromosome, no plasmid) exhibits a G+C content of 43.3% and contains 5,786 protein-coding and 59 RNA genes, including 2 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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22. Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov.
- Author
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Pagnier, Isabelle, Croce, Olivier, Robert, Catherine, Raoult, Didier, and Scola, Bernard
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GENOMES ,RIBOSOMAL RNA ,ANNOTATIONS ,PROTEINS ,BIOMOLECULES - Abstract
Anaerococcus provenciensis strain 9402080 sp. nov. is the type strain of A. provenciensis sp. nov., a new species within the genus Anaerococcus. This strain was isolated from a cervical abscess sample. A. provenciensis is a Gram-positive anaerobic cocci. Here, we describe the features of this organism, together with the complete genome sequence and annotation. The 2.26 Mbp long genome contains 2099 protein-coding and 57 RNA genes including 8 rRNA genes and exhibits a G+C content of 33.48%. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
23. Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov.
- Author
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Mishra, Ajay, Lagier, Jean-Christophe, Pfleiderer, Anne, Nguyen, Thi, Caputo, Aurelia, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GRAM-positive bacteria ,BACTERIAL genomes ,ANIMAL species ,MICROBIOLOGY ,FECES ,CAUCASIAN race - Abstract
Holdemania massiliensis strain AP2 sp. nov. is the type strain of H. massiliensis sp. nov., a new species within the genus Holdemania. This strain, whose genome is described here, was isolated from the fecal flora of a 21-year-old French Caucasian female suffering from severe restrictive anorexia nervosa. H. massiliensis is a Gram-positive, anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,795,625 bp-long genome (one chromosome but no plasmid) contains 3,461 protein-coding and 49 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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- View/download PDF
24. Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov.
- Author
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Lo, Cheikh, Mishra, Ajay, Padhmanabhan, Roshan, Samb Ba, Bissoume, Sow, Amy, Robert, Catherine, Couderc, Carine, Faye, Ngor, Raoult, Didier, Fournier, Pierre-Edouard, and Fenollar, Florence
- Subjects
CLOSTRIDIUM ,BACILLACEAE ,GENOMES ,GENES ,CHROMOSOMES - Abstract
Clostridium dakarense strain FF1, is the type strain of Clostridium dakarense sp. nov., a new species within the genus Clostridium. This strain, whose genome is described here, was isolated from the fecal flora of a 4-month-old Senegalese child suffering from gastroenteritis. C. dakarense sp. nov. strain FF1 is an obligate anaerobic Gram-positive bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,735,762 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 27.98% and contains 3,843 protein-coding and 73 RNA genes, including 8 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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- View/download PDF
25. Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.
- Author
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Keita, Mamadou, Diene, Seydina, Robert, Catherine, Raoult, Didier, Fournier, Pierre-Edouard, and Bittar, Fadi
- Subjects
BACILLUS (Bacteria) ,PROTEINS ,GENOMES ,GENES ,CHROMOSOMES - Abstract
Strain G2 sp. nov. is the type strain of B. massiliogorillae, a proposed new species within the genus Bacillus. This strain, whose genome is described here, was isolated in France from the fecal sample of a wild western lowland gorilla from Cameroon. B. massiliogorillae is a facultative anaerobic, Gram-variable, rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,431,633 bp long genome (1 chromosome but no plasmid) contains 5,179 protein-coding and 98 RNA genes, including 91 tRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
26. Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov.
- Author
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Mishra, Ajay, Edouard, Sophie, Makaya Dangui, Nicole, Lagier, Jean-Christophe, Caputo, Aurelia, Blanc-Tailleur, Caroline, Ravaux, Isabelle, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
AIDS ,BOTANY ,GRAM-positive bacterial infections ,GENOMES ,CHROMOSOMES - Abstract
Nosocomiicoccus massiliensis strain NP2 sp. nov. is the type strain of a new species within the genus Nosocomiicoccus. This strain, whose genome is described here, was isolated from the fecal flora of an AIDS-infected patient living in Marseille, France. N. massiliensis is a Gram-positive aerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,645,244 bp long genome (one chromosome but no plasmid) contains 1,738 protein-coding and 45 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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27. Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov.
- Author
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Mediannikov, Oleg, Karkouri, Khalid, Robert, Catherine, Fournier, Pierre-Edouard, and Raoult, Didier
- Subjects
BARTONELLA ,GENES ,CROCIDURA russula ,GENOMES ,CHROMOSOMES - Abstract
Bartonella florenciae sp. nov. strain R4 is the type strain of B. florenciae sp. nov., a new species within the genus Bartonella. This strain, whose genome is described here, was isolated in France from the spleen of the shrew Crocidura russula. B. florenciae is an aerobic, rod-shaped, Gram-negative bacterium. Here we describe the features of this organism, together with the complete genome sequence and its annotation. The 2,010,844 bp-long genome contains 1,909 protein-coding and 46 RNA genes, including two rRNA operons. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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28. Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence.
- Author
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Elbir, Haitham, Robert, Catherine, Nguyen, Ti, Gimenez, Grégory, Sanousi, Sulieman, Flock, Jan-Ingmar, Raoult, Didier, and Drancourt, Michel
- Subjects
GENOMES ,STAPHYLOCOCCUS aureus ,HYPEROSTOSIS frontalis interna ,CHROMOSOMES ,PLASMIDS - Abstract
Staphylococcus aureus subsp. anaerobius is responsible for Morel's disease in animals and a cause of abscess in humans. It is characterized by a microaerophilic growth, contrary to the other strains of S. aureus. The 2,604,446-bp genome (32.7% GC content) of S. anaerobius ST1464 comprises one chromosome and no plasmids. The chromosome contains 2,660 open reading frames (ORFs), 49 tRNAs and three complete rRNAs, forming one complete operon. The size of ORFs ranges between 100 to 4,600 bp except for two ORFs of 6,417 and 7,173 bp encoding segregation ATPase and non-ribosomal peptide synthase, respectively. The chromosome harbors Staphylococcus phage 2638A genome and incomplete Staphylococcus phage genome PT1028, but no detectable CRISPRS. The antibiotic resistance gene for tetracycline was found although Staphylococcus aureus subsp. anaerobius is susceptible to tetracycline in-vitro. Intact oxygen detoxification genes encode superoxide dismutase and cytochrome quinol oxidase whereas the catalase gene is impaired by a stop codon. Based on the genome, in-silico multilocus sequence typing indicates that S. aureus subsp. anaerobius emerged as a clone separated from all other S. aureus strains, illustrating host-adaptation linked to missing functions. Availability of S. aureus subsp. anaerobius genome could prompt the development of post-genomic tools for its rapid discrimination from S. aureus. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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29. Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov.
- Author
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Mishra, Ajay, Pfleiderer, Anne, Lagier, Jean-Christophe, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GRAM-positive bacteria ,RIBOSOMAL RNA ,GENOMES ,ALGAL genomes ,BACTERIOPHAGE genomes - Abstract
Bacillus massilioanorexius strain AP8 sp. nov. is the type strain of B. massilioanorexius sp. nov., a new species within the genus Bacillus. This strain, whose genome is described here, was isolated from the fecal flora of a 21-year-old Caucasian French female suffering from a severe form of anorexia nervosa since the age of 12 years. B. massilioanorexius is a Gram-positive aerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,616,135 bp long genome (one chromosome but no plasmid) contains 4,432 protein-coding and 87 RNA genes, including 8 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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30. Non-contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov.
- Author
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Padmanabhan, Roshan, Lagier, Jean-Christophe, Dangui, Nicole, Michelle, Caroline, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GRAM-negative bacteria ,RNA ,HIV-positive persons ,CHROMOSOME abnormalities ,GENETIC mutation - Abstract
Megasphaera massiliensis strain NP3 sp. nov. is the type strain of Megasphaera massiliensis sp. nov., a new species within the genus Megasphaera. This strain, whose genome is described here, was isolated from the fecal flora of an HIV-infected patient. M. massiliensis is a Gram-negative, obligate anaerobic coccobacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,661,757 bp long genome (1 chromosome but no plasmid) contains 2,577 protein-coding and 61 RNA genes, including 5 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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31. Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium.
- Author
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Pagnier, Isabelle, Croce, Olivier, Robert, Catherine, Raoult, Didier, and Scola, Bernard
- Subjects
GRAM-positive bacteria ,ACTINOBACTERIA ,GENETIC speciation ,SYMPATRIC speciation ,GENOMES - Abstract
Anaerococcus pacaensis strain 9403502, is the type strain of Anaerococcus pacaensis sp. nov., a new species within a new genus Anaerococcus. This strain, whose genome is described here, was isolated from a blood sample. A. pacaensis strain 9403502 is an obligate anaerobic Gram-positive coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2.36 Mbp long genome exhibits a G+C content of 35.05% and contains 2,186 protein-coding and 72 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
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32. Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov.
- Author
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Mediannikov, Oleg, Karkouri, Khalid, Diatta, Georges, Robert, Catherine, Fournier, Pierre-Edouard, and Raoult, Didier
- Subjects
BARTONELLA infections ,GENOMES ,GRAM-negative bacteria ,RNA - Abstract
Bartonella senegalensis sp. nov. strain OS02 is the type strain of B. senegalensis sp. nov., a new species within the genus Bartonella. This strain, whose genome is described here, was isolated in Senegal from the soft tick Ornithodoros sonrai, the vector of relapsing fever. B. senegalensis is an aerobic, rod-shaped, Gram-negative bacterium. Here we describe the features of this organism, together with the complete genome sequence and its annotation. The 1,966,996 bp-long genome contains 1,710 protein-coding and 46 RNA genes, including 6 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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33. Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov.
- Author
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Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Gorlas, Aurore, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GENOMES ,PLASMIDS ,CYTOPLASMIC inheritance ,GENETIC vectors ,GENETICS - Abstract
Bacillus massiliosenegalensis strain JC6 sp. nov. is the type strain of Bacillus massiliosenegalensis sp. nov., a new species within the genus Bacillus. This strain was isolated from the fecal flora of a healthy Senegalese patient. B. massiliosenegalensis is an aerobic Gram-positive rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,981,278-bp long genome comprises a 4,957,301-bp chromosome and a 23,977-bp plasmid. The chromosome contains 4,925 protein-coding and 72 RNA genes, including 4 rRNA genes. The plasmid contains 29 protein-coding genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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34. Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae.
- Author
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Mishra, Ajay, Hugon, Perrine, Lagier, Jean-Christophe, Nguyen, Thi-Tien, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GENOMES ,BACILLUS (Bacteria) ,PLASMIDS ,RIBOSOMAL RNA ,SPECIES - Abstract
Enorma massiliensis strain phI is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. massiliensis strain phI is a Gram-positive, obligately anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,280,571 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 62.0% and contains 1,901 protein-coding and 51 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
35. Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae.
- Author
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Mishra, Ajay, Lagier, Jean-Christophe, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
NUCLEOTIDE sequencing ,RNA ,AMINO acids ,MOLECULAR chaperones ,COLD shock proteins - Abstract
Timonella senegalensis strain JC301 gen. nov., sp. nov. is the type strain of T. senegalensis gen. nov., sp. nov., a new species within the newly proposed genus Timonella. This bacterial strain was isolated from the fecal flora of a healthy Senegalese patient. In this report, we detail the features of this organism, together with the complete genome sequence and annotation. Timonella senegalensis strain JC301 exhibits the highest 16S rRNA similarity (95%) with Sanguibacter marinus, the closest validly published bacterial species. The genome of T. senegalensis strain JC301 is 3,010,102-bp long, with one chromosome and no plasmid. The genome contains 2,721 protein-coding genes and 72 RNA genes, including 5 rRNA genes. The genomic annotation revealed that T. senegalensis strain JC301 possesses the complete complement of enzymes necessary for the de novo biosynthesis of amino acids and vitamins (except for riboflavin and biotin), as well as the enzymes involved in the metabolism of various carbon sources, chaperone genes, and genes involved in the regulation of polyphosphate and glycogen levels. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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36. Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae.
- Author
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Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Nguyen, Thi, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
NUCLEOTIDE sequencing ,RIBOSOMAL RNA ,GENOMES ,CHROMOSOMES ,SPECIES - Abstract
Dielma fastidiosa strain JC13 gen. nov., sp. nov. is the type strain of D. fastidiosa gen. nov., sp. nov., the type species of a new genus within the family Erysipelotrichaceae. This strain, whose draft genome is described here, was isolated from the fecal flora of a healthy 16-year-old male Senegalese volunteer. D. fastidiosa is a Gram-negative anaerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,574,031 bp long genome comprises a 3,556,241-bp chromosome and a 17,790-bp plasmid. The chromosome contains 3,441 protein-coding and 50 RNA genes, including 3 rRNA genes, whereas the plasmid contains 17 protein-coding genes. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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37. Non-contiguous finished genome sequence and description of Brevibacillus massiliensis sp. nov.
- Author
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Hugon, Perrine, Mishra, Ajay, Lagier, Jean-Christophe, Nguyen, Thi, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
BREVIBACILLUS brevis ,BACTERIAL genomes ,FECES ,MICROBIOLOGY ,OBESITY in women - Abstract
Brevibacillus massiliensis strain phR sp. nov. is the type strain of B. massiliensis sp. nov., a new species within the genus Brevibacillus. This strain was isolated from the fecal flora of a woman suffering from morbid obesity. B. massiliensis is a Gram-positive aerobic rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,051,018 bp long genome (1 chromosome but no plasmid) contains 5,051 protein-coding and 84 RNA genes, and exhibits a G+C content of 53.1%. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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38. Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov.
- Author
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Lagier, Jean-Christophe, Karkouri, Khalid El, Mishra, Ajay Kumar, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
ENTEROBACTER ,GENOMES ,SENEGALESE ,GRAM-negative aerobic bacteria ,FLAGELLATA - Abstract
Enterobacter massiliensis strain JC163
T sp. nov. is the type strain of E. massiliensis sp. nov., a new species within the genus Enterobacter. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. E. massiliensis is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,922,247 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 55.1% and contains 4,644 protein-coding and 80 RNA genes, including 5 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2013
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39. Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov.
- Author
-
Lagier, Jean-Christophe, Elkarkouri, Khalid, Rivet, Romain, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
SENEGALESE ,BACTERIAL genomes ,ACTINOBACTERIA ,ANAEROBIC bacteria ,BOTANY - Abstract
Senegalemassilia anaerobia strain JC110
T sp.nov. is the type strain of Senegalemassilia anaer-obia gen. nov., sp. nov., the type species of a new genus within the Coriobacteriaceae family, Senegalemassilia gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. S. anaerobia is a Gram-positive anaerobic coccobacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,383,131 bp long genome contains 1,932 protein-coding and 58 RNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2013
- Full Text
- View/download PDF
40. Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov.
- Author
-
Hugon, Perrine, Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Rivet, Romain, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
MORBID obesity ,GENOMES ,GRAM-negative bacteria ,SENEGALESE ,ANAEROBIC bacteria - Abstract
Alistipes obesi sp. nov. strain ph8
T is the type strain of A. obesi, a new species within the ge-nus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,162,233 bp long genome (1 chromosome but no plasmid) contains 2,623 protein-coding and 49 RNA genes, including three rRNA genes [ABSTRACT FROM AUTHOR]- Published
- 2013
- Full Text
- View/download PDF
41. Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov.
- Author
-
Mishra, Ajay Kumar, Lagier, Jean-Christophe, Nguyen, Thi-Tien, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GENOMES ,GRAM-positive bacteria ,ANAEROBIC bacteria genetics ,RIBOSOMAL RNA ,ANAEROBIC infections - Abstract
Peptoniphilus senegalensis strain JC140
T sp. nov., is the type strain of P. senegalensis sp. nov., a new species within the genus Peptoniphilus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. P. senegalensis strain JC140T is an obli-gate Gram-positive anaerobic coccus. Here we describe the features of this organism, togeth-er with the complete genome sequence and annotation. The 1,840,641 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 32.2% and contains 1,744 protein-coding and 23 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2013
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42. Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov.
- Author
-
Mishra, Ajay Kumar, Hugon, Perrine, Lagier, Jean-Christophe, Nguyen, Thi-Thien, Robert, Catherine, Couderc, Carine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
MORBID obesity ,CHROMOSOMES ,PLASMIDS ,GENES ,BACTERIAL genomes ,RIBOSOMAL RNA - Abstract
Peptoniphilus obesi strain ph1
T sp. nov., is the type strain of P. obesi sp. nov., a new species within the genus Peptoniphilus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. obesi strain ph1T is a Gram-positive, obligate anaerobic coccus. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. The 1,774,150 bp long genome (1 chromosome but no plasmid) contains 1,689 protein-coding and 29 RNA genes, including 5 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2013
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- View/download PDF
43. Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov.
- Author
-
Lagier, Jean-Christophe, Ramasamy, Dhamodharan, Rivet, Romain, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
CELLULOMONAS ,GRAM-positive bacteria ,BACTERIAL genomes ,FECAL analysis ,BACILLUS (Bacteria) - Abstract
Cellulomonas massiliensis strain JC225
T sp. nov. is the type strain of Cellulomonas massiliensis sp., a new species within the genus Cellulomonas. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. C. massiliensis is an aerobic rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,407,283 bp long genome contains 3,083 protein-coding and 48 RNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
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44. Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov.
- Author
-
Kokcha, Sahare, Ramasamy, Dhamodharan, Lagier, Jean-Christophe, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
BREVIBACTERIUM ,GENOMES ,GRAM-positive bacteria ,BACTERIA classification ,PLASMID genetics - Abstract
Brevibacterium senegalense strain JC43T sp. nov. is the type strain of Brevibacterium senegalense sp. nov., a new species within the Brevibacterium genus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. B. senegalense is an aero-bic rod-shaped Gram-positive bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,425,960 bp long genome (1 chromo-some but no plasmid) contains 3,064 protein-coding and 49 RNA genes. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
45. Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.
- Author
-
Mishra, Ajay Kumar, Hugon, Perrine, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
BACTERIAL genomes ,GRAM-positive bacteria ,PLASMID genetics ,MORBID obesity ,NUTRITION disorders - Abstract
Peptoniphilus grossensis strain ph5
T sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
46. Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.
- Author
-
Lagier, Jean-Christophe, Gimenez, Gregory, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GRAM-negative bacteria ,BACTERIAL genomes ,FECAL analysis ,NUTRITION disorders ,GENES - Abstract
Herbaspirillum massiliense strain JC206
T sp. nov. is the type strain of H. massiliense sp. nov., a new species within the genus Herbaspirillum. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. H. massiliense is an aerobic rod. Here we describe the features of this organism, together with the complete genome se-quence and annotation. The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
47. Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov.
- Author
-
Mishra, Ajay Kumar, Lagier, Jean-Christophe, Rivet, Romain, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
PAENIBACILLUS ,GRAM-negative anaerobic bacteria ,RIBOSOMAL RNA ,RHIZOSPHERE microbiology ,CHROMOSOMES - Abstract
Paenibacillus senegalensis strain JC66
T , is the type strain of Paenibacillus senegalensis sp. nov., a new species within the genus Paenibacillus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. P. senegalensis strain JC66T is a facultative Gram-negative anaerobic rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,581,254 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 48.2% and con-tains 5,008 protein-coding and 51 RNA genes, including 9 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
48. Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov.
- Author
-
Mishra, Ajay Kumar, Lagier, Jean-Christophe, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GENOMES ,GRAM-positive bacteria ,MATRIX-assisted laser desorption-ionization ,RIBOSOMAL RNA ,OPEN reading frames (Genetics) - Abstract
Peptoniphilus timonensis strain JC401
T sp. nov. is the type strain of P. timonensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. P. timonensis is an obligate Gram-positive anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,758,598 bp long genome (1 chromosome, no plasmid) contains 1,922 protein-coding and 22 RNA genes, including 5 rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
49. Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants
- Author
-
Aghnatios, Rita, Cayrou, Caroline, Garibal, Marc, Robert, Catherine, Azza, Said, Raoult, Didier, Drancourt, Michel, Azza, Saïd, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48, INSB-INSB-Centre National de la Recherche Scientifique (CNRS), Unité des Rickettsies et pathogènes émergents (URPE), INSB-INSB-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48, Unité de Recherche sur les Maladies Infectieuses Tropicales Emergentes (URMITE), Institut des sciences biologiques (INSB-CNRS)-Institut des sciences biologiques (INSB-CNRS)-Centre National de la Recherche Scientifique (CNRS), and Institut des sciences biologiques (INSB-CNRS)-Institut des sciences biologiques (INSB-CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48
- Subjects
Genetics ,Genome ,biology ,Planctomycetes ,Culture ,Chromosome ,16S ribosomal RNA ,biology.organism_classification ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,Short Genome Report ,Microbiology ,chemistry.chemical_compound ,Plasmid ,chemistry ,Gemmata obscuriglobus ,Gemmata massiliana ,Hospital water network ,Peptidoglycan ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,Gene ,Gemmata ,Bacteria - Abstract
Gemmata massiliana is a new Planctomycetes bacterium isolated from a hospital water network in France, using a new culture medium. It is an aerobic microorganism with optimal growth at pH 8, at 30 °C and salinity ≤ 1.25 % NaCl. G. massiliana is resistant to β-lactam antibiotics, due to lack of peptidoglycan in its cell wall.G. massiliana shares a 97 % 16S rRNA gene sequence similarity with the nearest species, Gemmata obscuriglobus; and 99 % similarity with unnamed soil isolates. Its 9,249,437-bp genome consists in one chromosome and no detectable plasmid and has a 64.07 % G + C content, 32.94 % of genes encoding for hypothetical proteins. The genome contains an incomplete 19.6-kb phage sequence, 26 CRISPRs, 3 CAS and 15 clusters of secondary metabolites. G. massiliana genome increases knowledge of a poorly known world of bacteria. Electronic supplementary material The online version of this article (doi:10.1186/s40793-015-0103-0) contains supplementary material, which is available to authorized users.
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50. Draft genome sequence of <italic>Fermentimonas caenicola</italic> strain SIT8, isolated from the human gut.
- Author
-
Beye, Mamadou, Bakour, Sofiane, Traore, Sory Ibrahima, Rathored, Jaishriram, Labas, Noémie, Raoult, Didier, and Fournier, Pierre-Edouard
- Subjects
GUT microbiome ,NUCLEOTIDE sequencing ,GRAM-negative bacteria ,RIBOSOMAL RNA ,BACTERIAL genomes ,RNA sequencing - Abstract
We report the properties of a draft genome sequence of the bacterium
Fermentimonas caenicola strain SIT8 (= CSUR P1560). This strain, whose genome is described here, was isolated from the fecal flora of a healthy 28-month-old Senegalese boy. Strain SIT8 is a facultatively anaerobic Gram-negative bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,824,451-bp long (1 chromosome but no plasmid) contains 2354 protein-coding and 46 RNA genes, including four rRNA genes. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
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