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69 results on '"Raoult, Didier"'

67. Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Author

Mishra, Ajay Kumar, Hugon, Perrine, Robert, Catherine, Raoult, Didier, and Fournier, Pierre-Edouard

Subjects
BACTERIAL genomes, GRAM-positive bacteria, PLASMID genetics, MORBID obesity, NUTRITION disorders
Abstract

Peptoniphilus grossensis strain ph5T sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes. [ABSTRACT FROM AUTHOR]

Published
2012
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68. Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants

Author

Aghnatios, Rita, Cayrou, Caroline, Garibal, Marc, Robert, Catherine, Azza, Said, Raoult, Didier, Drancourt, Michel, Azza, Saïd, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48, INSB-INSB-Centre National de la Recherche Scientifique (CNRS), Unité des Rickettsies et pathogènes émergents (URPE), INSB-INSB-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48, Unité de Recherche sur les Maladies Infectieuses Tropicales Emergentes (URMITE), Institut des sciences biologiques (INSB-CNRS)-Institut des sciences biologiques (INSB-CNRS)-Centre National de la Recherche Scientifique (CNRS), and Institut des sciences biologiques (INSB-CNRS)-Institut des sciences biologiques (INSB-CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48

Subjects
Genetics, Genome, biology, Planctomycetes, Culture, Chromosome, 16S ribosomal RNA, biology.organism_classification, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Short Genome Report, Microbiology, chemistry.chemical_compound, Plasmid, chemistry, Gemmata obscuriglobus, Gemmata massiliana, Hospital water network, Peptidoglycan, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Gene, Gemmata, Bacteria
Abstract

Gemmata massiliana is a new Planctomycetes bacterium isolated from a hospital water network in France, using a new culture medium. It is an aerobic microorganism with optimal growth at pH 8, at 30 °C and salinity ≤ 1.25 % NaCl. G. massiliana is resistant to β-lactam antibiotics, due to lack of peptidoglycan in its cell wall.G. massiliana shares a 97 % 16S rRNA gene sequence similarity with the nearest species, Gemmata obscuriglobus; and 99 % similarity with unnamed soil isolates. Its 9,249,437-bp genome consists in one chromosome and no detectable plasmid and has a 64.07 % G + C content, 32.94 % of genes encoding for hypothetical proteins. The genome contains an incomplete 19.6-kb phage sequence, 26 CRISPRs, 3 CAS and 15 clusters of secondary metabolites. G. massiliana genome increases knowledge of a poorly known world of bacteria. Electronic supplementary material The online version of this article (doi:10.1186/s40793-015-0103-0) contains supplementary material, which is available to authorized users.

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69. Draft genome sequence of <italic>Fermentimonas caenicola</italic> strain SIT8, isolated from the human gut.

Author

Beye, Mamadou, Bakour, Sofiane, Traore, Sory Ibrahima, Rathored, Jaishriram, Labas, Noémie, Raoult, Didier, and Fournier, Pierre-Edouard

Subjects
GUT microbiome, NUCLEOTIDE sequencing, GRAM-negative bacteria, RIBOSOMAL RNA, BACTERIAL genomes, RNA sequencing
Abstract

We report the properties of a draft genome sequence of the bacterium Fermentimonas caenicola strain SIT8 (= CSUR P1560). This strain, whose genome is described here, was isolated from the fecal flora of a healthy 28-month-old Senegalese boy. Strain SIT8 is a facultatively anaerobic Gram-negative bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,824,451-bp long (1 chromosome but no plasmid) contains 2354 protein-coding and 46 RNA genes, including four rRNA genes. [ABSTRACT FROM AUTHOR]

Published
2018
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