22 results on '"Rochette, Sophie"'
Search Results
2. Interpretation of 28 nm FD-SOI quantum dot transport data taken at 1.4 K using 3D quantum TCAD simulations
- Author
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Kriekouki, Ioanna, Beaudoin, Félix, Philippopoulos, Pericles, Zhou, Chenyi, Camirand Lemyre, Julien, Rochette, Sophie, Mir, Salvador, Barragan, Manuel J., Pioro-Ladrière, Michel, and Galy, Philippe
- Published
- 2022
- Full Text
- View/download PDF
3. Effect of deletion of the protein kinase PRKD1 on development of the mouse embryonic heart.
- Author
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Waheed‐Ullah, Qazi, Wilsdon, Anna, Abbad, Aseel, Rochette, Sophie, Bu'Lock, Frances, Hitz, Marc‐Phillip, Dombrowsky, Gregor, Cuello, Friederike, Brook, J. David, and Loughna, Siobhan
- Subjects
PROTEIN kinases ,EMBRYOLOGY ,MITRAL valve ,PULMONARY valve ,CONGENITAL heart disease ,SERINE/THREONINE kinases - Abstract
Congenital heart disease (CHD) is the most common congenital anomaly, with an overall incidence of approximately 1% in the United Kingdom. Exome sequencing in large CHD cohorts has been performed to provide insights into the genetic aetiology of CHD. This includes a study of 1891 probands by our group in collaboration with others, which identified three novel genes—CDK13, PRKD1, and CHD4, in patients with syndromic CHD. PRKD1 encodes a serine/threonine protein kinase, which is important in a variety of fundamental cellular functions. Individuals with a heterozygous mutation in PRKD1 may have facial dysmorphism, ectodermal dysplasia and may have CHDs such as pulmonary stenosis, atrioventricular septal defects, coarctation of the aorta and bicuspid aortic valve. To obtain a greater appreciation for the role that this essential protein kinase plays in cardiogenesis and CHD, we have analysed a Prkd1 transgenic mouse model (Prkd1em1) carrying deletion of exon 2, causing loss of function. High‐resolution episcopic microscopy affords detailed morphological 3D analysis of the developing heart and provides evidence for an essential role of Prkd1 in both normal cardiac development and CHD. We show that homozygous deletion of Prkd1 is associated with complex forms of CHD such as atrioventricular septal defects, and bicuspid aortic and pulmonary valves, and is lethal. Even in heterozygotes, cardiac differences occur. However, given that 97% of Prkd1 heterozygous mice display normal heart development, it is likely that one normal allele is sufficient, with the defects seen most likely to represent sporadic events. Moreover, mRNA and protein expression levels were investigated by RT‐qPCR and western immunoblotting, respectively. A significant reduction in Prkd1 mRNA levels was seen in homozygotes, but not heterozygotes, compared to WT littermates. While a trend towards lower PRKD1 protein expression was seen in the heterozygotes, the difference was only significant in the homozygotes. There was no compensation by the related Prkd2 and Prkd3 at transcript level, as evidenced by RT‐qPCR. Overall, we demonstrate a vital role of Prkd1 in heart development and the aetiology of CHD. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. A Cryogenic Memristive Neural Decoder for Fault-tolerant Quantum Error Correction
- Author
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Marcotte, Frédéric, Mouny, Pierre-Antoine, Yon, Victor, Dagnew, Gebremedhin A., Kulchytskyy, Bohdan, Rochette, Sophie, Beilliard, Yann, Drouin, Dominique, and Ronagh, Pooya
- Subjects
FOS: Computer and information sciences ,Quantum Physics ,Computer Science - Machine Learning ,Emerging Technologies (cs.ET) ,FOS: Physical sciences ,Computer Science - Emerging Technologies ,Quantum Physics (quant-ph) ,Machine Learning (cs.LG) - Abstract
Neural decoders for quantum error correction (QEC) rely on neural networks to classify syndromes extracted from error correction codes and find appropriate recovery operators to protect logical information against errors. Despite the good performance of neural decoders, important practical requirements remain to be achieved, such as minimizing the decoding time to meet typical rates of syndrome generation in repeated error correction schemes, and ensuring the scalability of the decoding approach as the code distance increases. Designing a dedicated integrated circuit to perform the decoding task in co-integration with a quantum processor appears necessary to reach these decoding time and scalability requirements, as routing signals in and out of a cryogenic environment to be processed externally leads to unnecessary delays and an eventual wiring bottleneck. In this work, we report the design and performance analysis of a neural decoder inference accelerator based on an in-memory computing (IMC) architecture, where crossbar arrays of resistive memory devices are employed to both store the synaptic weights of the decoder neural network and perform analog matrix-vector multiplications during inference. In proof-of-concept numerical experiments supported by experimental measurements, we investigate the impact of TiO$_\textrm{x}$-based memristive devices' non-idealities on decoding accuracy. Hardware-aware training methods are developed to mitigate the loss in accuracy, allowing the memristive neural decoders to achieve a pseudo-threshold of $9.23\times 10^{-4}$ for the distance-three surface code, whereas the equivalent digital neural decoder achieves a pseudo-threshold of $1.01\times 10^{-3}$. This work provides a pathway to scalable, fast, and low-power cryogenic IMC hardware for integrated QEC.
- Published
- 2023
5. Structural and functional studies on lysostaphin, an antistaphylococcal endopeptidase
- Author
-
Rochette, Sophie
- Subjects
615.1 ,QP501 Animal biochemistry ,QD Chemistry - Abstract
This PhD thesis describes research into the structure and function of lysostaphin (EC 3.4.24.75), a glycylglycine endopeptidase secreted by Staphylococcus simulans biovar staphylolyticus ATCC 1362. Lysostaphin is a member of the M23/M37 zinc metalloprotease family and is a pre-pro-enzyme. The mature form (after removal of the pro-region) contains two distinct domains, the C-terminal cell wall targeting domain of lysostaphin (termed LssTdom in the thesis) facilitates binding to Staphylococcus aureus cells. The endopeptidase domain (termed LssEdom in the thesis) cleaves the pentaglycine crosslinks in the peptidoglycan resulting in cell death through cell rupture of S. aureus. Lysostaphin is a potential therapeutic antibiotic for Methicillin-resistant Staphylococcus aureus (MRSA) for which new antibacterials are required owing to the widespread occurrence of multi-drug resistant strains. To date, the structural requirements for enzymatic activity and the target in the cell wall for lysostaphin have not been fully elucidated. Thus a structure might enable rationally guided design of lysostaphin variants for the generation of new enzymes which would also cleave the non-canonical crosslinks and would thus overcome bacterial resistance. Thus, one approach was to obtain the lysostaphin structure using homology modelling. Lysostaphin shares significant homology with the ALE-1 (83 % identity) and LytM (48 % identity) bacteriocins, and modelling the structure of lysostaphin was achieved using the recently released structures of LytM and ALE-1 derived from X-ray crystallography as templates. In addition, we report the successful production of active recombinant lysostaphin (as well as the endopeptidase and the targeting domains) and initial characterisation of their secondary structure by Fourier-transform infrared spectroscopy. Initially, advanced spectroscopic techniques including X-ray and NMR methods were investigated for molecular interaction studies between Lss and its putative ligands. Significant problems were encountered with these methods and mass spectrometry studies proved more amenable. Lysostaphin targeting domain-ligand complexes have been identified, along with their stoichiometry. The strength of the protein-ligand interactions has also been quantified. Lysostaphin was shown to bind in vitro Gly5 (mimicking the pentaglycine cross-bridge) and Lys-D-Ala-D-Ala (mimicking the stem peptide) with low affinity, but not NAM-L-Ala-D-iGln-Lys. It was also shown that lysostaphin targeting domain affinity for Gly5 was significantly reduced by addition of Gly-Gly-Ser-Gly-Ser (found in the host bacteria resistant to lysostaphin action – S. simulans) in solution. From these studies it could be concluded that resistance due to the incorporation of serine residues in the crossbridge were a result of the endopeptidase domain being unable to cleave this sequence and not due to the targeting domain being unable to bind it.
- Published
- 2009
6. Miniaturizing neural networks for charge state autotuning in quantum dots.
- Author
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Czischek, Stefanie, Yon, Victor, Genest, Marc-Antoine, Roux, Marc-Antoine, Rochette, Sophie, Lemyre, Julien Camirand, Moras, Mathieu, Pioro-Ladrière, Michel, Drouin, Dominique, Beilliard, Yann, and Melko, Roger G.
- Published
- 2022
- Full Text
- View/download PDF
7. 28 nm UTBB FD-SOI technology for Silicon-based quantum dots and Cryo-CMOSelectronics
- Author
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Kriekouki, I., Rochette, Sophie, Rohrbacher, Claude, Camirand Lemyre, J., Pioro-Ladriere, Michel, Drouin, Dominique, Barragan, Manuel J., Mir, Salvador, Galy, Philippe, Techniques de l'Informatique et de la Microélectronique pour l'Architecture des systèmes intégrés (TIMA), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Université de Sherbrooke (UdeS), Laboratoire Nanotechnologies et Nanosystèmes [Sherbrooke] (LN2), Université de Sherbrooke (UdeS)-École Centrale de Lyon (ECL), Université de Lyon-Université de Lyon-École supérieure de Chimie Physique Electronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Institut Interdisciplinaire d'Innovation Technologique [Sherbrooke] (3IT), and STMicroelectronics [Crolles] (ST-CROLLES)
- Subjects
[SPI]Engineering Sciences [physics] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2019
8. Algorithm for automated tuning of a quantum dot to the single electron regime
- Author
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Lapointe-Major, Maxime, Lemyre, Julien Camirand, Lachance-Quirion, Dany, Rochette, Sophie, Pioro-Ladriere, Michel, Université de Sherbrooke (UdeS), Laboratoire Nanotechnologies Nanosystèmes (LN2 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-École Centrale de Lyon (ECL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Sherbrooke (UdeS)-École supérieure de Chimie Physique Electronique de Lyon (CPE)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SPI]Engineering Sciences [physics] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2019
9. Ultra-thin body buried oxide 28nm FD-SOI platform for silicon quantum dots
- Author
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Rohrbacher, Claude, Rochette, Sophie, Lemyre, Julien Camirand, Bédard-Vallée, Alexandre, Lemieux, Pascal, Galy, Philippe, Bedecarrats, Thomas, Arnaud, Franck, Drouin, Dominique, Pioro-Ladriere, Michel, Laboratoire Nanotechnologies Nanosystèmes (LN2 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-École Centrale de Lyon (ECL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Sherbrooke (UdeS)-École supérieure de Chimie Physique Electronique de Lyon (CPE)-Centre National de la Recherche Scientifique (CNRS), STMicroelectronics [Crolles] (ST-CROLLES), Université de Sherbrooke (UdeS), and Institut Interdisciplinaire d'Innovation Technologique [Sherbrooke] (3IT)
- Subjects
[PHYS.QPHY]Physics [physics]/Quantum Physics [quant-ph] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2019
10. UTBB FD-SOI Technology for Silicon-based Quantum Dots and Cryo-CMOS Electronics
- Author
-
Kriekouki, I., Camirand Lemyre, J., Rochette, Sophie, Rohrbacher, Claude, Drouin, D., Barragan, Manuel J., Mir, S., Galy, Philippe, Pioro-Ladrière, M., BEN TITO, Laurence, Techniques de l'Informatique et de la Microélectronique pour l'Architecture des systèmes intégrés (TIMA), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Université de Sherbrooke (UdeS), STMicroelectronics [Crolles] (ST-CROLLES), Techniques of Informatics and Microelectronics for integrated systems Architecture (TIMA), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), and Université de Sherbrooke [Sherbrooke]
- Subjects
PACS 85.42 ,[SPI.NANO] Engineering Sciences [physics]/Micro and nanotechnologies/Microelectronics ,[SPI.NANO]Engineering Sciences [physics]/Micro and nanotechnologies/Microelectronics ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2019
11. The N-terminus of survivin is a mitochondrial-targeting sequence and Src regulator
- Author
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Dunajová, Lucia, Cash, Emily, Markus, Robert, Rochette, Sophie, Townley, Amelia R., and Wheatley, Sally P.
- Subjects
C-Src ,Survivin ,Green Fluorescent Proteins ,Short Report ,Protein Sorting Signals ,Mitochondria ,Inhibitor of Apoptosis Proteins ,Structure-Activity Relationship ,src-Family Kinases ,Cell Adhesion ,Humans ,Amino Acid Sequence ,Src ,Cancer ,HeLa Cells - Abstract
Survivin (also known as BIRC5) is a cancer-associated protein that exists in several locations in the cell. Its cytoplasmic residence in interphase cells is governed by CRM1 (also known as XPO1)-mediated nuclear exportation, and its localisation during mitosis to the centromeres and midzone microtubules is that of a canonical chromosomal passenger protein. In addition to these well-established locations, survivin is also a mitochondrial protein, but how it gets there and its function therein is presently unclear. Here, we show that the first ten amino acids at the N-terminus of survivin are sufficient to target GFP to the mitochondria in vivo, and ectopic expression of this decapeptide decreases cell adhesion and accelerates proliferation. The data support a signalling mechanism in which this decapeptide regulates the tyrosine kinase Src, leading to reduced focal adhesion plaques and disruption of F-actin organisation. This strongly suggests that the N-terminus of survivin is a mitochondrial-targeting sequence that regulates Src, and that survivin acts in concert with Src to promote tumorigenesis., Summary: The proline-rich N-terminal ten amino acids of survivin is a mitochondrial-targeting domain and a regulator of the proto-oncogene Src. Hence, survivin could act in concert with Src to promote tumorigenesis.
- Published
- 2016
12. Characterisation of the developing heart in a pressure overloaded model utilising RNA sequencing to direct functional analysis.
- Author
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Parnall, Matthew, Perdios, Chrysostomos, Pang, Kar Lai, Rochette, Sophie, and Loughna, Siobhan
- Subjects
MYOCARDIAL reperfusion ,NUCLEOTIDE sequence ,RNA sequencing ,FUNCTIONAL analysis ,VENTRICULAR septal defects ,CONGENITAL heart disease ,CHICKEN embryos - Abstract
Cardiogenesis is influenced by both environmental and genetic factors, with blood flow playing a critical role in cardiac remodelling. Perturbation of any of these factors could lead to abnormal heart development and hence the formation of congenital heart defects. Although abnormal blood flow has been associated with a number of heart defects, the effects of abnormal pressure load on the developing heart gene expression profile have to date not clearly been defined. To determine the heart transcriptional response to haemodynamic alteration during development, outflow tract (OFT) banding was employed in the chick embryo at Hamburger and Hamilton stage (HH) 21. Stereological and expression studies, including the use of global expression analysis by RNA sequencing with an optimised procedure for effective globin depletion, were subsequently performed on HH29 OFT‐banded hearts and compared with sham control hearts, with further targeted expression investigations at HH35. The OFT‐banded hearts were found to have an abnormal morphology with a rounded appearance and left‐sided dilation in comparison with controls. Internal analysis showed they typically had a ventricular septal defect and reductions in the myocardial wall and trabeculae, with an increase in the lumen on the left side of the heart. There was also a significant reduction in apoptosis. The differentially expressed genes were found to be predominately involved in contraction, metabolism, apoptosis and neural development, suggesting a cardioprotective mechanism had been induced. Therefore, altered haemodynamics during development leads to left‐sided dilation and differential expression of genes that may be associated with stress and maintaining cardiac output. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
13. Research Advances for the Conservation of Cultural Heritage
- Author
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Lazzari, Massimo and Rochette, Sophie
- Subjects
Cultural Heritage ,Conservation - Abstract
Because European Cultural Heritage is an invaluable legacy, the Ministry for Science and Innovation funded the Spanish Network on Science and Technology for the Conservation of Cultural Heritage (TechnoHeritage), which began its activities in March 2011.Currently seventy five groups participate in the Network, including Spanish National Research Council (CSIC) and Spanish universities teams, cultural institutions, foundations and museums, and private companies. One of the activities of the Network is the organization of annual meetings. This International Congress—organised on behalf of TechnoHeritage by the Universidade de Santiago de Compostela— has a goal of creating an interdisciplinary forum for discussion on all aspects of cultural heritage conservation while providing an up-to-date and comprehensive picture of the state-of-the-art investigations in this field.
- Published
- 2012
14. The N-terminus of survivin is a mitochondrial-targeting sequence and Src regulator.
- Author
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Dunajova', Lucia, Cash, Emily, Markus, Robert, Rochette, Sophie, Townley, Amelia R., and Wheatley, Sally P.
- Subjects
SURVIVIN (Protein) ,PROTEINS ,APOPTOSIS inhibition ,CELLS ,BIOLOGY - Abstract
Survivin (also known as BIRC5) is a cancer-associated protein that exists in several locations in the cell. Its cytoplasmic residence in interphase cells is governed by CRM1 (also known as XPO1)- mediated nuclear exportation, and its localisation during mitosis to the centromeres and midzone microtubules is that of a canonical chromosomal passenger protein. In addition to these wellestablished locations, survivin is also a mitochondrial protein, but how it gets there and its function therein is presently unclear. Here, we show that the first ten amino acids at the N-terminus of survivin are sufficient to target GFP to the mitochondria in vivo, and ectopic expression of this decapeptide decreases cell adhesion and accelerates proliferation. The data support a signalling mechanism in which this decapeptide regulates the tyrosine kinase Src, leading to reduced focal adhesion plaques and disruption of F-actin organisation. This strongly suggests that the N-terminus of survivin is a mitochondrial-targeting sequence that regulates Src, and that survivin acts in concert with Src to promote tumorigenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
15. Clinical apparatus for the reduction of dose area product for patients undergoing x-ray catheterization.
- Author
-
Robert, Normand, Watt, Kristina N., Rochette, Sophie, Desponds, Lionel, Vaillant, Régis, and Rowlands, John A.
- Subjects
CARDIAC catheterization ,OPTICAL attenuators ,X-ray imaging ,MEDICAL artifacts ,IONIZATION chambers ,THERAPEUTIC use of copper - Abstract
Purpose: The authors describe a design for prepatient region of interest attenuators (ROIAs) to reduce dose area product (DAP) for clinical use. The authors describe a model to predict DAP values from x-ray technique parameters recorded during a clinical procedure for image sequences obtained in the presence or absence of ROIAs. The model was developed primarily to determine what the DAP to a patient undergoing cardiac catheterization with a ROIA would have been if no ROIA had been used allowing a determination of DAP reduction. Methods: Copper ROIAs with thicknesses that vary gradually so as not to cause significant image artifacts were constructed. X-ray image sequences were acquired on a clinical catheterization system with and without ROIAs with varying x-ray technique parameters. DAP values were measured for all said exposures using an ionization chamber and compared to a model the authors developed. Results: The model can predict DAP values within 3.5% on average with or without ROIAs when compared to ionization chamber measurements. Conclusions: The proposed experimental design is adequate for measuring DAP reductions on the order of 1.5-3.5 that are expected when introducing a ROIA during patient catheterization imaging. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
16. Mental and psychological conditions, medical comorbidity and functional limitation: differential associations in older adults with cognitive impairment, depressive symptoms and co-existence of both.
- Author
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Millán-Calenti, José C., Maseda, Ana, Rochette, Sophie, Vázquez, Gustavo A., Sánchez, Alba, and Lorenzo, Trinidad
- Subjects
COMORBIDITY ,DIFFERENTIAL association theory ,COGNITION disorders ,DEPRESSION in old age ,SYMPTOMS - Abstract
Objective Cognitive impairment and depressive symptoms are common among the geriatric population but the co-occurrence of both is rarely studied. The purpose of this study was to identify and compare the factors associated with three groups of elderly people: those assessed with cognitive impairment alone (COG), depressive symptoms alone (DEP) or co-existence of both (COG-DEP). Methods The cross-sectional study included 600 community-dwellers ages 65 and older. All participants underwent a comprehensive evaluation. Global cognition was measured by the Mini-Mental State Examination (MMSE) and depressive symptoms were defined by the Geriatric Depression Scale (GDS). Specific chronic illnesses relevant to the Charlson comorbidity index (CCI) were self-reported. Functional status was evaluated by the Katz' basic (ADL) and Lawton's instrumental (IADL) activities of daily living scales. Results COG-DEP was explained by IADL dependence (OR: 11.9, 95% CI: 4.59-30.78), ADL dependence (OR: 11.5, 95% CI: 5.59-23.69), cerebrovascular disease (OR: 3.6, 95% CI: 1.48-8.68), congestive heart failure (OR: 3.4, 95% CI: 1.77-6.59) and diabetes (OR: 2.6, 95% CI: 1.30-5.18), but it was best predicted by functional limitations in the adjusted model. Being functionally dependent and medically ill with shorter life expectancy was shown to significantly increase the odds of being DEP. Functional limitation in IADL was without distinction associated to COG, DEP and COG-DEP. Conclusion The present results on COG, DEP and COG-DEP show the particular relevance of certain medical comorbidities and functional limitations to those three distinct groups of elderly people. Copyright © 2010 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
17. Structural and functional studies on lysostaphin, an antistaphylococcal endopeptidase
- Author
-
Rochette, Sophie
- Abstract
This PhD thesis describes research into the structure and function of lysostaphin (EC 3.4.24.75), a glycylglycine endopeptidase secreted by Staphylococcus simulans biovar staphylolyticus ATCC 1362. Lysostaphin is a member of the M23/M37 zinc metalloprotease family and is a pre-pro-enzyme. The mature form (after removal of the pro-region) contains two distinct domains, the C-terminal cell wall targeting domain of lysostaphin (termed LssTdom in the thesis) facilitates binding to Staphylococcus aureus cells. The endopeptidase domain (termed LssEdom in the thesis) cleaves the pentaglycine crosslinks in the peptidoglycan resulting in cell death through cell rupture of S. aureus. \ud Lysostaphin is a potential therapeutic antibiotic for Methicillin-resistant Staphylococcus aureus (MRSA) for which new antibacterials are required owing to the widespread occurrence of multi-drug resistant strains. To date, the structural requirements for enzymatic activity and the target in the cell wall for lysostaphin have not been fully elucidated. Thus a structure might enable rationally guided design of lysostaphin variants for the generation of new enzymes which would also cleave the non-canonical crosslinks and would thus overcome bacterial resistance. \ud Thus, one approach was to obtain the lysostaphin structure using homology modelling. Lysostaphin shares significant homology with the ALE-1 (83 % identity) and LytM (48 % identity) bacteriocins, and modelling the structure of lysostaphin was achieved using the recently released structures of LytM and ALE-1 derived from X-ray crystallography as templates. In addition, we report the successful production of active recombinant lysostaphin (as well as the endopeptidase and the targeting domains) and initial characterisation of their secondary structure by Fourier-transform infrared spectroscopy. \ud Initially, advanced spectroscopic techniques including X-ray and NMR methods were investigated for molecular interaction studies between Lss and its putative ligands. Significant problems were encountered with these methods and mass spectrometry studies proved more amenable. Lysostaphin targeting domain-ligand complexes have been identified, along with their stoichiometry. The strength of the protein-ligand interactions has also been quantified. Lysostaphin was shown to bind in vitro Gly5 (mimicking the pentaglycine cross-bridge) and Lys-D-Ala-D-Ala (mimicking the stem peptide) with low affinity, but not NAM-L-Ala-D-iGln-Lys. It was also shown that lysostaphin targeting domain affinity for Gly5 was significantly reduced by addition of Gly-Gly-Ser-Gly-Ser (found in the host bacteria resistant to lysostaphin action – S. simulans) in solution. From these studies it could be concluded that resistance due to the incorporation of serine residues in the crossbridge were a result of the endopeptidase domain being unable to cleave this sequence and not due to the targeting domain being unable to bind it.
18. Single-electron regime and Pauli Spin Blockade in a Silicon MOS DQD.
- Author
-
rochette, sophie
- Published
- 2015
19. Cognitive impairment as predictor of functional dependence in an elderly sample
- Author
-
Millán-Calenti, José Carlos, Tubío, Javier, Pita-Fernández, Salvador, Rochette, Sophie, Lorenzo, Trinidad, and Maseda, Ana
- Subjects
- *
ANALYSIS of variance , *CHI-squared test , *COGNITION disorders , *CONFIDENCE intervals , *DEPENDENCY (Psychology) , *EPIDEMIOLOGY , *LIFE skills , *OARS Multidimensional Functional Assessment Questionnaire , *PROBABILITY theory , *STATISTICS , *LOGISTIC regression analysis , *DATA analysis , *CROSS-sectional method , *DATA analysis software , *OLD age - Abstract
Abstract: This retrospective study determines the role of cognitive decline as a predictor of functional dependence. In a representative 600 community-dwellers aged 65 or older, we examined using a logistic regression model, the association between cognitive status (taking into account age and educational level) and dependence on basic and instrumental activities of daily living (ADL and IADL, resp.), controlling for socio-demographic variables and health conditions. The Mini-Mental State Examination (MMSE) scores were compared in participants with functional disability to perform basic and instrumental activities. Cognitive status influenced functional dependence on activities of daily living, basic (OR=4.1, 95%CI=2.7–6.1) and instrumental (OR=5.7, 95%CI=3.5–9.3), independently of gender, age, educational level and health conditions. Besides, cognitive impairment was associated with the dependence on certain basic (e.g., bathing, toileting) and instrumental (e.g., using the telephone, taking medications, and handling finances) activities. This was a gradual relationship, the highest cognitive decline implied the highest loss of ability at carrying out activities, with a larger impact on basic activities. These findings suggest that cognitive decline can be a predictor for functional dependence, independently of other variables, and turn into a very useful tool indicating the need for support. [Copyright &y& Elsevier]
- Published
- 2012
- Full Text
- View/download PDF
20. Evaluation of mural paintings biodeterioration by oxalate formation. TechnoHeritage. International Congress on Science and Technology for the Conservation of Cultural Heritage
- Author
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Serrana, A, Rosado, T, Gil, M, Mirao, J, Candeias, A, Caldeira, A Teresa, Lazzari, Massimo, and Rochette, Sophie
- Subjects
Mural paintings ,biodeterioration ,lead white pigment - Published
- 2012
21. Evaluation of mural paintings biodeterioration by oxalate formation
- Author
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Rosado, T, Gil, M, Mirao, J, Candeias, A, Caldeira, A T, Lazzari, Massimo, and Rochette, Sophie
- Subjects
oxalates ,Raman ,Microbiological deterioration - Published
- 2012
22. Design of a polypeptide FRET substrate that facilitates study of the antimicrobial protease lysostaphin.
- Author
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Bardelang P, Vankemmelbeke M, Zhang Y, Jarvis H, Antoniadou E, Rochette S, Thomas NR, Penfold CN, and James R
- Subjects
- Cloning, Molecular, Endopeptidases genetics, Fluorescence Resonance Energy Transfer, Lysostaphin pharmacology, Mutagenesis, Site-Directed, Peptides chemical synthesis, Staphylococcus aureus drug effects, Endopeptidases metabolism, Lysostaphin chemistry, Peptides chemistry
- Abstract
We have developed a polypeptide lysostaphin FRET (fluorescence resonance energy transfer) substrate (MV11F) for the endopeptidase activity of lysostaphin. Site-directed mutants of lysostaphin that abolished the killing activity against Staphylococcus aureus also completely inhibited the endopeptidase activity against the MV11 FRET substrate. Lysostaphin-producing staphylococci are resistant to killing by lysostaphin through incorporation of serine residues at positions 3 and 5 of the pentaglycine cross-bridge in their cell walls. The MV11 FRET substrate was engineered to introduce a serine residue at each of four positions of the pentaglycine target site and it was found that only a serine residue at position 3 completely inhibited cleavage. The introduction of random, natural amino acid substitutions at position 3 of the pentaglycine target site demonstrated that only a glycine residue at this position was compatible with lysostaphin cleavage of the MV11 FRET substrate. A second series of polypeptide substrates (decoys) was developed with the GFP (green fluorescent protein) domain of MV11 replaced with that of the DNase domain of colicin E9. Using a competition FRET assay, the lysostaphin endopeptidase was shown to bind to a decoy peptide containing a GGSGG cleavage site. The MV11 substrate provides a valuable system to facilitate structure/function studies of the endopeptidase activity of lysostaphin and its orthologues.
- Published
- 2009
- Full Text
- View/download PDF
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