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Storage is an important aspect of groundnut, as the in-shell and shelled kernels are prone to infestation by insects, pests, and fungi. Among several storage pests, the groundnut bruchid, Caryedon serratus, causes serious losses. Farmers often resort to different management practices, including hermetic storage, to control it. The moisture content of the commodity plays an important role in insect infestation during storage. Drying to safe moisture levels before storage is known to prevent the activity of various living organisms, such as storage pests. However, drying to low levels of moisture may not be economical for farmers, as they may not have access to devices to accurately check product moisture. In this regard, we wanted to demonstrate the efficacy of triple-layer hermetic storage bags in preventing the damage caused by C. serratus when the groundnuts are stored at intermediate (10%) and high (14%) levels of moisture compared to traditionally used bags such as polypropylene bags and jute bags. Groundnut pods at 10% moisture content and 14% moisture content were separately inoculated with adult bruchids and a toxigenic strain of Aspergillus flavus fungal inoculum before storing them for 6 months. Results from groundnut samples taken at two-month intervals indicated that groundnut pods stored in triple-layer hermetic bags were completely free from infestation by C. serratus by recording a zero number of eggs laid, number of pupae, adult emergence, percentage of loss, and percentage of damage up to 6 months of storage, by creating low oxygen (hypoxia) and high carbon dioxide (hypercarbia) conditions. Results also indicate no loss of pod weight stored in triple-layer bags, but a slight reduction in germination percentage was recorded due to a slight increase in fungal activity, but the reduction was significantly less in triple-layer plastic bags compared to other bag types. Similarly, biochemical constituents such as oil and protein content were slightly reduced in triple-layer plastic bags when pods were stored at a 10% moisture level, but a higher reduction was observed at a 14% moisture level. However, the reduction was very high and significant in other bag types at both 10 and 14% moisture levels. [ABSTRACT FROM AUTHOR]

Groundnut stem rot, caused by Sclerotium rolfsii, is notorious for causing significant economic losses in groundnut production worldwide. During field evaluation at two locations, Patancheru and Rajendranagar, the bioagents Trichoderma viride, Bacillus cereus and fungicide azoxystrobin performed exceptionally well. Among the various treatments, treatment T10, which consisted of Trichoderma viride and Bacillus cereus as ST (seed treatment) + SA (soil application) + reduced rate of azoxysrobin, proved to be the most effective in controlling stem rot of groundnut. Treatment T8, comprising of Trichoderma viride as ST + SA + reduced rate of azoxystrobin, and treatment T9, consisting of Bacillus cereus as ST + SA + reduced rate of azoxystrobin, also exhibited good control of the disease under both glasshouse and field conditions. Additionally, these treatments resulted in substantial growth and yield attributing parameters, with the highest pod yield and B:C ratio being recorded. In conclusion, the bioagents Trichoderma viride (T2), Bacillus cereus (B5) and fungicide azoxystrobin have demonstrated great potential for the effective management of stem rot in groundnut and can be utilized in field settings. [ABSTRACT FROM AUTHOR]

Aflatoxin contamination caused by Aspergillus flavus significantly threatens food safety and human health. Resistance to aflatoxin is a highly complex and quantitative trait, but the underlying molecular and biochemical mechanisms are poorly understood. The present study aims to identify the resistance‐related metabolites in groundnut that influence the defense mechanism against aflatoxin. Here, metabolite profiling of resistant (55–437) and susceptible (TMV‐2) groundnut genotypes, which exhibited contrasting levels of resistance to A. flavus growth and aflatoxin accumulation under pathogen‐ or mock‐inoculated treatments, was undertaken using liquid chromatography and high‐resolution mass spectrometry (LC‐HRMS). Non‐targeted metabolomic analysis revealed key resistance‐related metabolites belonging to phenylpropanoids, flavonoids, fatty acids, alkaloids, and terpenoid biosynthetic pathways. The phenylpropanoids ‐ hydroxycinnamic acid amides (HCAAs) and lignins were among the most abundantly accumulated metabolites in the resistant genotype compared to the susceptible genotype. HCAAs and lignins are deposited as polymers and conjugated metabolites to strengthen the secondary cell wall, which acts as a barrier to pathogen entry. Further, histochemical staining confirmed the secondary cell wall thickening due to HCAAs and lignin depositions. Quantitative real‐time PCR studies revealed higher expressions of phenylalanine ammonia‐lyase (PAL), 4‐coumarate: CoA ligase (4CL), cinnamoyl CoA reductase (CCR2), cinnamoyl alcohol dehydrogenase (CAD1), agmatine hydroxycinnamoyl transferase (ACT), chalcone synthase (CHS), dihydroflavonol 4‐reductase (DFR) and flavonol synthase (FLS) in the pathogen‐inoculated resistant genotype than in the susceptible genotype. This study reveals that the resistance to aflatoxin contamination in groundnut genotypes is associated with secondary cell wall thickening due to the deposition of HCAAs and lignins. [ABSTRACT FROM AUTHOR]

Macrophomina phaseolina is the most devastating and emerging threat to groundnut production in India. An increase in average temperature and inconsistent rainfalls resulting from changing climatic conditions are strongly believed to aggravate the disease and cause severe yield losses. The present study aims to conduct a holistic survey to assess the prevalence and incidence of dry root rot of groundnut in major groundnut growing regions of Southern India, viz., Andhra Pradesh, Telangana, Karnataka, and Tamil Nadu. Furthermore, the pathogenic variability was determined using different assays such as morphological, cultural, pathogenic, and molecular assays. Results indicate that disease incidence in surveyed locations ranged from 8.06 to 20.61%. Both temperature and rainfall played a major role in increasing the disease incidence. The pathogenic variability of M. phaseolina isolates differed significantly, based on the percent disease incidence induced on cultivars of JL-24 groundnut and K-6 groundnut. Morphological variations in terms of growth pattern, culture color, sclerotia number, and sclerotia size were observed. The molecular characterization of M. phaseolina isolates done by ITS rDNA region using ITS1 and ITS4 primers yielded approximately 600 bp PCR amplicons, sequenced and deposited in GenBank (NCBI). Molecular variability analysis using SSR primers indicated the genetic variation among the isolates collected from different states. The present investigation revealed significant variations in pathogenic variability among isolates of M. phaseolina and these may be considered important in disease management and the development of resistant cultivars against groundnut dry root rot disease. [ABSTRACT FROM AUTHOR]

Peanut (Arachis hypogaea) is an important oilseed and cash crop worldwide, contributing an important source of edible oil and protein for human nutrition. However, the incidence of stem rot disease caused by Athelia rolfsii poses a major challenge to peanut cultivation, resulting in significant yield losses. In this study, a panel of 202 peanut accessions was evaluated for their resistance to stem rot by inoculating plants in the field with A. rolfsii-infested oat grains in three environments. The mean disease index value of each environment for accessions in subsp. fasitigiate and subsp. hypogaea showed no significant difference. Accessions from southern China displayed the lowest disease index value compared to those from other ecological regions. We used whole-genome resequencing to analyze the genotypes of the accessions and to identify significant SNPs associated with stem rot resistance through genome-wide association study (GWAS). A total of 121 significant SNPs associated with stem rot resistance in peanut were identified, with phenotypic variation explained (PVE) ranging from 12.23% to 15.51%. A total of 27 candidate genes within 100 kb upstream and downstream of 23 significant SNPs were annotated, which have functions related to recognition, signal transduction, and defense response. These significant SNPs and candidate genes provide valuable information for further validation and molecular breeding to improve stem rot resistance in peanut. [ABSTRACT FROM AUTHOR]

Groundnut (Arachis hypogaea L.) is an important oilseed crop and the economic production of groundnut is constrained by soil-borne diseases. Stem rot, caused by the necrotrophic fungus Sclerotium rolfsii, was the most common soil-borne disease in groundnut. A roving survey was conducted in major groundnut growing areas of Telangana during kharif 2019 and rabi 2019-20 to collect a preliminary data of the incidence level and pattern of prevalence of the stem rot disease. The district of Warangal has the highest incidence of stem rot. The lowest incidence of stem rot was found in Telangana's Wanaparthy and Nagarkurnool districts. Disease incidence was correlated with weather parameters, during Kharif-2019, temperature, relative humidity and rainfall showed positive correlation, whereas evaporation showed negative correlation, during Rabi-2019-20, temperature, relative humidity and evaporation showed positive correlation and rainfall showed negative correlation. This study provided an elementary idea about the per cent disease incidence as well as paved the path for developing ecosystem specific management strategy to reduce impact of soil borne diseases of groundnut in different districts of Telangana. [ABSTRACT FROM AUTHOR]

Climate change across the globe has an impact on the occurrence, prevalence, and severity of plant diseases. About 30% of yield losses in major crops are due to plant diseases; emerging diseases are likely to worsen the sustainable production in the coming years. Plant diseases have led to increased hunger and mass migration of human populations in the past, thus a serious threat to global food security. Equipping the modern varieties/hybrids with enhanced genetic resistance is the most economic, sustainable and environmentally friendly solution. Plant geneticists have done tremendous work in identifying stable resistance in primary genepools and many times other than primary genepools to breed resistant varieties in different major crops. Over the last two decades, the availability of crop and pathogen genomes due to advances in next generation sequencing technologies improved our understanding of trait genetics using different approaches. Genome-wide association studies have been effectively used to identify candidate genes and map loci associated with different diseases in crop plants. In this review, we highlight successful examples for the discovery of resistance genes to many important diseases.In addition, major developments in association studies, statistical models and bioinformatic tools that improve the power, resolution and the efficiency of identifying marker-trait associations. Overall this review provides comprehensive insights into the two decades of advances in GWAS studies and discusses the challenges and opportunities this research area provides for breeding resistant varieties. [ABSTRACT FROM AUTHOR]

The study was conducted in the Department of Plant Pathology, College of Agriculture, Rajendranagar, Professor Jayashankar Telangana State Agricultural University, Hyderabad, India to understand the histopathological mechanisms of initial interaction of Puccinia arachidis with six groundnut genotypes. Fully expanded quadrifoliate leaves were inoculated with P. arachidis using the detached leaf assay. Five-mm leaf discs were cut at 6 hours after inoculation (hai) and each day until 5 days after inoculation (dai) and examined for histopathological interactions. Germination of urediniospores was detected during 6–8 hai and continued until 24 hai. There were no differences in pre-penetration and penetration among all the six genotypes. Differences in post-penetration were observed among the genotypes during 3–5 dai. In genotypes TMV 2 and K 6, extensive hyphal colonization was observed in the intercellular spaces of mesophyll cells by 4–5 dai indicating compatible interaction and susceptibility to rust disease. Sparse hyphal growth and corresponding mesophyll cell death at 3–5 dai in genotypes ICGV 171015 and ICGV 13229 indicated defense response by the host and moderate resistance. In genotypes ICG 11426 and GPBD 4, complete arrest of hyphal growth by 4–5 dai due to extensive mesophyll necrosis suggested incompatible interaction and resistance to rust. This is the first documentation of the histopathological description of the initial infection strategies of P. arachidis in the selected groundnut genotypes. [ABSTRACT FROM AUTHOR]

Pre-harvest aflatoxin contamination (PAC) in groundnut is a serious quality concern globally, and drought stress before harvest further exacerbate its intensity, leading to the deterioration of produce quality. Understanding the host–pathogen interaction and identifying the candidate genes responsible for resistance to PAC will provide insights into the defense mechanism of the groundnut. In this context, about 971.63 million reads have been generated from 16 RNA samples under controlled and Aspergillus flavus infected conditions, from one susceptible and seven resistant genotypes. The RNA-seq analysis identified 45,336 genome-wide transcripts under control and infected conditions. This study identified 57 transcription factor (TF) families with major contributions from 6570 genes coding for bHLH (719), MYB-related (479), NAC (437), FAR1 family protein (320), and a few other families. In the host (groundnut), defense-related genes such as senescenceassociated proteins, resveratrol synthase, seed linoleate, pathogenesis-related proteins, peroxidases, glutathione-S-transferases, chalcone synthase, ABA-responsive gene, and chitinases were found to be differentially expressed among resistant genotypes as compared to susceptible genotypes. This study also indicated the vital role of ABA-responsive ABR17, which co-regulates the genes of ABA responsive elements during drought stress, while providing resistance against A. flavus infection. It belongs to the PR-10 class and is also present in several plant–pathogen interactions. [ABSTRACT FROM AUTHOR]

Aflatoxin-affected groundnut or peanut presents a major global health issue to both commercial and subsistence farming. Therefore, understanding the genetic and molecular mechanisms associated with resistance to aflatoxin production during host--pathogen interactions is crucial for breeding groundnut cultivars with minimal level of aflatoxin contamination. Here, we performed gene expression profiling to better understand the mechanisms involved in reduction and prevention of aflatoxin contamination resulting from Aspergillus flavus infection in groundnut seeds. RNA sequencing (RNA-Seq) of 16 samples from different time points during infection (24 h, 48 h, 72 h and the 7th day after inoculation) in U 4-7-5 (resistant) and JL 24 (susceptible) genotypes yielded 840.5 million raw reads with an average of 52.5 million reads per sample. Atotal of 1779 unique differentially expressed genes (DEGs) were identified. Furthermore, comprehensive analysis revealed several pathways, such as disease resistance, hormone biosynthetic signaling, flavonoid biosynthesis, reactive oxygen species (ROS) detoxifying, cell wall metabolism and catabolizing and seed germination. We also detected several highly upregulated transcription factors, such as ARF, DBB, MYB, NAC and C2H2 in the resistant genotype in comparison to the susceptible genotype after inoculation. Moreover, RNA-Seq analysis suggested the occurrence of coordinated control of key pathways controlling cellular physiology and metabolism upon A. flavus infection, resulting in reduced aflatoxin production. [ABSTRACT FROM AUTHOR]

The present study sought to identify household risk factors associated with aflatoxin contamination within and across diverse Indian food systems and to evaluate their utility in risk modeling. Samples (n = 595) of cereals, pulses, and oil seeds were collected from 160 households across four diverse districts of India and analyzed for aflatoxin B1 using enzyme-linked immunosorbent assay (ELISA). Demographic information, food and cropping systems, food management behaviors, and storage environments were profiled for each household. An aflatoxin detection risk index was developed based on household-level features and validated using a repeated 5-fold cross-validation approach. Across districts, between 30–80% of households yielded at least one contaminated sample. Aflatoxin B1 detection rates and mean contamination levels were highest in groundnut and maize, respectively, and lower in other crops. Landholding had a positive univariate effect on household aflatoxin detection, while storage conditions, product source, and the number of protective behaviors used by households did not show significant effects. Presence of groundnut, post-harvest grain washing, use of sack-based storage systems, and cultivation status (farming or non-farming) were identified as the most contributive variables in stepwise logistic regression and were used to generate a household-level risk index. The index had moderate classification accuracy (68% sensitivity and 62% specificity) and significantly correlated with village-wise aflatoxin detection rates. Spatial analysis revealed utility of the index for identifying at-risk localities and households. This study identified several key features associated with aflatoxin contamination in Indian food systems and demonstrated that household characteristics are substantially predictive of aflatoxin risk. [ABSTRACT FROM AUTHOR]

High oleic trait, resistance to rust and late leaf spot (LLS) are important breeding objectives in groundnut. Rust and LLS cause significant economic loss, and high oleic trait is an industry preferred trait that enhances economic returns. This study reports marker-assisted selection to introgress high oleic content, resistance to LLS and rust into Kadiri 6 (K 6), a popular cultivar. The alleles for target traits were selected using linked allele-specific, simple sequence repeats and single nucleotide polymorphic markers. The F1s (384), intercrossed F1s (441), BC1F1s (380), BC1F2s (195), and BC1F3s (343) were genotyped to obtain desired allelic combination. Sixteen plants were identified with homozygous high oleic, LLS and rust resistance alleles in BC1F2, which were advanced to BC1F3 and evaluated for disease resistance, yield governing and nutritional quality traits. Phenotyping with Near-Infrared Reflectance Spectroscopy identified three lines (BC1F3-76, BC1F3-278, and BC1F3-296) with >80% oleic acid. The identified lines exhibit high levels of resistance to LLS and rust diseases (score of 3.0–4.0) with preferred pod and kernel features. The selected lines are under yield testing trials in multi-locations for release and commercialization. The lines reported here demonstrated combining high oleic trait with resistance to LLS and rust diseases. [ABSTRACT FROM AUTHOR]

Aflatoxins are secondary metabolites produced by soilborne saprophytic fungus Aspergillus flavus and closely related species that infect several agricultural commodities including groundnut and maize. The consumption of contaminated commodities adversely affects the health of humans and livestock. Aflatoxin contamination also causes significant economic and financial losses to producers. Research efforts and significant progress have been made in the past three decades to understand the genetic behavior, molecular mechanisms, as well as the detailed biology of host-pathogen interactions. A range of omics approaches have facilitated better understanding of the resistance mechanisms and identified pathways involved during host-pathogen interactions. Most of such studies were however undertaken in groundnut and maize. Current efforts are geared toward harnessing knowledge on host-pathogen interactions and crop resistant factors that control aflatoxin contamination. This study provides a summary of the recent progress made in enhancing the understanding of the functional biology and molecular mechanisms associated with host-pathogen interactions during aflatoxin contamination in groundnut and maize. [ABSTRACT FROM AUTHOR]

Foliar fungal diseases especially late leaf spot (LLS) and rust are the important production constraints across the peanut growing regions of the world. A set of 340 diverse peanut genotypes that includes accessions from gene bank of International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), elite breeding lines from the breeding program, and popular cultivars were screened for LLS and rust resistance and yield traits across three locations in India under natural and artificial disease epiphytotic conditions. The study revealed significant variation among the genotypes for LLS and rust resistance at different environments. Combined analysis of variance revealed significant environment (E) and genotype × environment (G×E) interactions for both the diseases indicating differential response of genotypes in different environments. The present study reported 31 genotypes as resistant to LLS and 66 to rust across the locations at 90 DAS with maturity duration 103 to 128 days. Twenty-eight genotypes showed resistance to both the diseases across the locations, of which 19 derived from A. cardenasii , five from A. hypogaea , and four from A. villosa. Site regression and Genotype by Genotype x Environment (GGE) biplot analysis identified eight genotypes as stable for LLS, 24 for rust and 14 for pod yield under disease pressure across the environments. Best performing environment specific genotypes were also identified. Nine genotypes resistant to LLS and rust showed 77% to 120% increase in pod yield over control under disease pressure with acceptable pod and kernel features that can be used as potential parents in LLS and rust resistance breeding. Pod yield increase as a consequence of resistance offered to foliar fungal diseases suggests the possibility of considering 'foliar fungal disease resistance' as a must-have trait in all the peanut cultivars that will be released for cultivation in rainfed ecologies in Asia and Africa. The phenotypic data of the present study will be used for designing genomic selection prediction models in peanut. [ABSTRACT FROM AUTHOR]

Peanut allergy is one of the serious health concern and affects more than 1% of the world's population mainly in Americas, Australia, and Europe. Peanut allergy is sometimes life-threatening and adversely affect the life quality of allergic individuals and their families. Consumption of hypoallergen peanuts is the best solution, however, not much effort has been made in this direction for identifying or developing hypoallergen peanut varieties. A highly diverse peanut germplasm panel was phenotyped using a recently developed monoclonal antibody-based ELISA protocol to quantify five major allergens. Results revealed a wide phenotypic variation for all the five allergens studied i.e. , Ara h 1 (4–36,833 µg/g), Ara h 2 (41–77,041 µg/g), Ara h 3 (22–106,765 µg/g), Ara h 6 (829–103,892 µg/g), and Ara h 8 (0.01–70.12 µg/g). The hypoallergen peanut genotypes with low levels of allergen proteins for Ara h 1 (4 µg/g), Ara h 2 (41 µg/g), Ara h 3 (22 µg/g), Ara h 6 (829 µg/g), and Ara h 8 (0.01 µg/g) have paved the way for their use in breeding and genomics studies. In addition, these hypoallergen peanut genotypes are available for use in cultivation and industry, thus opened up new vistas for fighting against peanut allergy problem across the world. [ABSTRACT FROM AUTHOR]

Rust and late leaf spot (LLS) resistance sources involving Arachis batizocoi, A. duranensis, A. cardenasii and A. sps Manfredi‐5 were identified from field evaluation of interspecific derivatives (IDs) of groundnut in a disease nursery for two seasons. Although the sources displayed low levels of resistance compared to currently cultivated lines, they contribute allele diversity in groundnut breeding that has so far relied on alleles contributed from A. cardenasii for disease resistance. Multiple disease‐resistant and agronomically superior IDs, ICGVs 11379, 10121, 10179, 05097, 02411 and 00248 involving A. batizocoi, A. duranensis and A. cardenasii can be used in breeding for groundnut improvement. Genetic variability for resistance to rust and LLS, yield and nutritional quality traits was influenced by genotype, environment and genotype × environment interaction effects in individual and pooled analyses. In case of FAD (fatty acid desaturase)‐mutant alleles that govern high oleic trait, allele mining of IDs (110) showed that frequency of mutation in ahFAD2B is rare, whereas of ahFAD2A is common. High oleic lines were not detected among the IDs. [ABSTRACT FROM AUTHOR]

Summary: Aflatoxin contamination in peanuts poses major challenges for vulnerable populations of sub‐Saharan Africa and South Asia. Developing peanut varieties to combat preharvest Aspergillus flavus infection and resulting aflatoxin contamination has thus far remained a major challenge, confounded by highly complex peanut–Aspergilli pathosystem. Our study reports achieving a high level of resistance in peanut by overexpressing (OE) antifungal plant defensins MsDef1 and MtDef4.2, and through host‐induced gene silencing (HIGS) of aflM and aflP genes from the aflatoxin biosynthetic pathway. While the former improves genetic resistance to A. flavus infection, the latter inhibits aflatoxin production in the event of infection providing durable resistance against different Aspergillus flavus morphotypes and negligible aflatoxin content in several peanut events/lines well. A strong positive correlation was observed between aflatoxin accumulation and decline in transcription of the aflatoxin biosynthetic pathway genes in both OE‐Def and HIGS lines. Transcriptomic signatures in the resistant lines revealed key mechanisms such as regulation of aflatoxin synthesis, its packaging and export control, besides the role of reactive oxygen species‐scavenging enzymes that render enhanced protection in the OE and HIGS lines. This is the first study to demonstrate highly effective biotechnological strategies for successfully generating peanuts that are near‐immune to aflatoxin contamination, offering a panacea for serious food safety, health and trade issues in the semi‐arid regions. [ABSTRACT FROM AUTHOR]

Aflatoxin contamination in groundnut is an important qualitative issue posing a threat to food safety. In our present study, we have demonstrated the efficacy of certain good agricultural practices (GAPs) in groundnut, such as farmyard manure (5 t/ha), gypsum (500 kg/ha), a protective irrigation at 90 days after sowing (DAS), drying of pods on tarpaulins after harvest in farmers' fields. During 2013--2015, 89 on-farm demonstrations were conducted advocating GAPs, and compared with farmers' practices (FP) plots. Farmers' awareness of GAPs, and knowledge on important aspects of groundnut cultivation, were also assessed during our experimentation in the selected villages under study. Pre-harvest kernel infection by Aspergillus flavus, aflatoxin contamination, and pod yields were compared in GAPs plots, vis-à-vis FP plots. The cost of cultivation in both the plots was calculated and compared, based on farmer's opinion surveys. Results indicate kernel infections and aflatoxins were significantly lower, with 13-58% and 62-94% reduction, respectively, in GAPs plots over FP. Further, a net gain of around $23 per acre was realized through adoption of GAPs by farmers besides quality improvement of groundnuts. Based on our results, it can be concluded that on-farm demonstrations were the best educative tool to convince the farmers about the cost-effectiveness, and adoptability of aflatoxin management technologies. [ABSTRACT FROM AUTHOR]

Peanut (Arachis hypogaea L.) is an important self-pollinating tetraploid (AABB, 2n = 4x = 40) legume grown for the high-quality edible oil and easily digestible protein in its seeds. Enormous genetic variability is present in the genus Arachis containing 79 wild species and cultivated peanut. Wild species offer significant variability, particularly for biotic and abiotic stresses, and can be used to develop cultivars with enhanced levels of resistance to key stresses. However, utilization of these species requires use of ploidy manipulations, bridge crosses, and embryo or ovule rescue. For efficient use of diploid wild species from section Arachis, several synthetics (amphidiploids and autotetraploids) have been developed using A- and B-genome accessions with high levels of resistance to multiple stresses. These synthetics are used in crossing programs with cultigens to develop prebreeding populations and introgression lines (ILs) with high frequency of useful genes and alleles into good agronomic backgrounds. Evaluation of two such populations derived from ICGV 91114 x ISATGR 121250 (a synthetic derived from A. duranensis Krapov. & W.C. Greg. x A. ipaensis Krapov. & W.C. Greg.) and ICGV 87846 x ISATGR 265-5 (A. kempf-mercadoi W.C. Greg. & C.E. Simpson x A. hoehnei Krapov. & W.C. Greg.) resulted in the identification of ILs with high levels of late leaf spot (LLS) and rust resistance and significant genetic variability for morphoagronomic traits. Genotyping of these ILs with markers linked to rust and LLS resistance provided evidence that introgression of possible novel alleles and resistance sources from different wild species other than the commonly used A. cardenasii Krapov. & W.C. Greg. will be beneficial for peanut improvement. [ABSTRACT FROM AUTHOR]

Peroxidases (POD), poly phenol oxidases (PPO) and phenyl alanine ammonia lyase (PAL) from healthy and Sclerotium rolfsii inoculated stems of 6 genotypes of groundnut were estimated after 3 days of inoculation. The activity of PO, PPO and PAL began from 3 rd DAI and gradually increased up to 6 th DAI and thereafter declined. PO, PPO, and PAL activity was more in infected stem sample compared to healthy stem. Among the genotypes resistant and moderately resistant genotypes recorded maximum PO, PPO and PAL activity whereas susceptible genotypes recorded less activity. Further, biochemical constituents of healthy and stem rot infected tissues of different genotypes of groundnut were evaluated. The results revealed that total sugar content was more in resistant genotypes (12009 and 17110), moderately resistant genotypes (17159 and 17169) when compared to highly susceptible genotypes (TMV-2 and KRG-1). Further, it is also found that healthy stems of groundnut recorded more sugar, reducing and non reducing sugar content compared to diseased stems. Phenol and protein contents in healthy and infected stems varied among genotypes. Phenol and protein contents were more in infected stem as compared to healthy stem. Further, resistant and moderately resistant genotypes showed more contents of phenol and protein than susceptible genotypes. [ABSTRACT FROM AUTHOR]

Soil bacterial communities have significant influence on soilborne plant pathogens and, thus, crop health. The present study focuses on ribotyping soil bacterial communities in different peanut-cropping sequences in Alabama. The objective was to identify changes in microbial assemblages in response to cropping sequences that can play a role in managing soilborne plant pathogens in peanut. Four peanut-cropping sequences were sampled at the Wiregrass Research Station, Headland, AL in 2006 and 2007, including continuous peanut, 4 years of bahiagrass followed by peanut, peanut-cotton, and peanut-corn-cotton. Soil sampling was done at early and mid-season and at harvest. Bacterial community structure was assessed using ribosomal intergenic spacer analysis (RISA) combined with 16S rRNA cloning and sequencing. RISA results indicated >70% dissimilarities among different cropping sequences. However, 90% similarities were noticed among replicated plots of the same cropping sequences. Cropping sequences and time of soil sampling had considerable effect on soil microbial community structure. Bahiagrass rotation with peanut was found to have the highest bacterial diversity, as indicated by a high Shannon Weaver Diversity index. Overall, higher bacterial diversity was observed with bahiagrass and corn rotations compared with continuous peanut. The bacterial divisions Proteobacteria, Acidobacteria, Firmicutes, Bacteroidetes, and Actinomycetes were the predominant bacterial phyla found in all peanut-cropping sequences. The Proteobacteria taxa in these soils were negatively correlated with the abundance of members of division Firmicutes but, conversely, bad a significant positive correlation with Gemmatimonadetes taxa. The prevalence of the division Actinomycetes was negatively correlated with the relative abundance of members of division Verrucomicrobia. These results indicate complex interactions among soil bacteria that are important contributors to crop health. [ABSTRACT FROM AUTHOR]

Aflatoxin contamination is a global menace that adversely affects food crops and human health. Peanut seed coat is the outer layer protecting the cotyledon both at pre- and post-harvest stages from biotic and abiotic stresses. The aim of the present study is to investigate the role of seed coat against A. flavus infection. In-vitro seed colonization (IVSC) with and without seed coat showed that the seed coat acts as a physical barrier, and the developmental series of peanut seed coat showed the formation of a robust multilayered protective seed coat. Radial growth bioassay revealed that both insoluble and soluble seed coat extracts from 55-437 line (resistant) showed higher A. flavus inhibition compared to TMV-2 line (susceptible). Further analysis of seed coat biochemicals showed that hydroxycinnamic and hydroxybenzoic acid derivatives are the predominant phenolic compounds, and addition of these compounds to the media inhibited A. flavus growth. Gene expression analysis showed that genes involved in lignin monomer, proanthocyanidin, and flavonoid biosynthesis are highly abundant in 55-437 compared to TMV-2 seed coats. Overall, the present study showed that the seed coat acts as a physical and biochemical barrier against A. flavus infection and its potential use in mitigating the aflatoxin contamination. [ABSTRACT FROM AUTHOR]

The spatiotemporal trends in aflatoxin B1 (AFB1), fumonisin B1 (FB1), and deoxynivalenol (DON) accumulation were analyzed in a range of food commodities (maize, groundnut, pearl millet, rice, and wheat) in village settings in Unnao, Uttar Pradesh, India. Samples (n = 1549) were collected across six communities and six time points spanning a calendar year and were analyzed for mycotoxins using enzyme-linked immunosorbent assays. AFB1 and FB1 were common across surveyed villages, with moderate to high detection rates (45–75%) observed across commodities. AFB1 levels in maize and groundnuts and FB1 levels in maize and pearl millet frequently exceeded regulatory threshold levels of 15 μg/kg (AFB1) and 2 μg/g (FB1). DON was analyzed in wheat, with 3% of samples yielding detectable levels and none exceeding 1 μg/g. In rice, AFB1 levels were highest in the bran and husk and lower in the kernel. Commodity type significantly influenced AFB1 detection status, while commodity type, season, and visual quality influenced samples' legal status. Storage characteristics and household socioeconomic status indicators did not have significant effects on contamination. No significant effects of any variables on FB1 detection or legal status were observed. Data on mycotoxin contamination, combined with data on local dietary intake, were used to estimate spatiotemporal mycotoxin exposure profiles. Estimated seasonal per capita exposure levels for AFB1 (5.4–39.3 ng/kg body weight/day) and FB1 (~0–2.4 μg/kg body weight/day) exceeded provisional maximum tolerable daily intake levels (1 ng/kg body weight/day for AFB1 and 2 μg/kg body weight/day for FB1) in some seasons and locations. This study demonstrates substantial dietary mycotoxin exposure risk in Unnao food systems and serves as an evidentiary foundation for participatory food safety intervention in the region. • Aflatoxin B1 and fumonisin B1 are prevalent in the food systems, while deoxynivalenol is largely absent. • Mycotoxin contamination in Indian villages has distinct spatial and seasonal trends. • Food system composition and cropping calendars influence the distribution of mycotoxins. • Trends in contamination are associated with dietary intakes at levels that warrant public health intervention. [ABSTRACT FROM AUTHOR]

Mycotoxins and other food safety and preservation challenges are prevalent in smallholder food systems, and communities often lack the knowledge and capacity required to effectively diagnose and address these concerns. Participatory research can facilitate innovation in resource-poor settings by fostering collective identity and leveraging endogenous systems of change, but there are limitations to the scalability and impact of this approach across contexts. Embedding participatory research within a farmer research network (FRN) has the potential to enhance the effectiveness of participatory research by enhancing the flow of knowledge between local and global innovation systems. This study proposes a framework for FRN-mediated participatory food safety research and reports on key findings from an application of this approach in six villages in Unnao District, Uttar Pradesh, India. A cohort of 184 households was organized into a FRN and engaged in a series of participatory research activities. Collective identity was developed within the FRN by reflecting on shared goals and establishing leadership. Participatory context characterization combined with multiple factor analysis (MFA) enabled formation of interest-based affinity groups, which explored potential solutions to a range of local problems. Affinity group deliberations led to the implementation of a FRN-wide hermetic grain storage intervention. Uptake of the technology was evaluated by monitoring continued usage, willingness-to-pay, price elasticity of demand, and retail sales across localities. Efficacy of the FRN approach for participatory food safety research was assessed by monitoring participation, motives, and experiential outcomes among members. Context characterization revealed distinct needs profiles influenced by the extent of home versus non-home time allocation and economic orientation. Household trials of hermetic sacks were effective in 99% (128/129) of participating households, with 83% continuing use in subsequent seasons. Willingness-to-pay analysis demonstrated substantial demand for hermetic sacks but high price elasticity across hypothetical price points. Despite demonstrable demand and positive reception, actual sales were low (<10 units) due to perceived high cost of the technology. Participation and experiential outcomes were generally positive, but the FRN was not successful in maintaining adequate, representative gender balance in its programming. This study documents a novel application of the FRN approach to participatory food safety research and constitutes substantial evidence for the potential for FRNs to catalyze local-global knowledge feedback loops. The model outlined is widely adaptable and could be used across contexts in India and elsewhere. [Display omitted] • The farmer research network (FRN) approach was applied tofood safety in village communities • FRN activities enabled capacity building and collective identity formulation • The FRN exhibited potential for mediating local-global knowledge flows • Farmers' food safety decision-making is complex and multi-dimensional • FRN participation led to positive experiential outcomes among members [ABSTRACT FROM AUTHOR]

Late leaf spot (LLS) caused by fungus Nothopassalora personata in groundnut is responsible for up to 50% yield loss. To dissect the complex nature of LLS resistance, comparative transcriptome analysis was performed using resistant (GPBD 4), susceptible (TAG 24) and a resistant introgression line (ICGV 13208) and identified a total of 12,164 and 9954 DEGs (differentially expressed genes) respectively in A- and B-subgenomes of tetraploid groundnut. There were 135 and 136 unique pathways triggered in A- and B-subgenomes, respectively, upon N. personata infection. Highly upregulated putative disease resistance genes, an RPP-13 like (Aradu.P20JR) and a NBS-LRR (Aradu.Z87JB) were identified on chromosome A02 and A03, respectively, for LLS resistance. Mildew resistance Locus (MLOs)-like proteins, heavy metal transport proteins, and ubiquitin protein ligase showed trend of upregulation in susceptible genotypes, while tetratricopeptide repeats (TPR), pentatricopeptide repeat (PPR), chitinases, glutathione S-transferases, purple acid phosphatases showed upregulation in resistant genotypes. However, the highly expressed ethylene responsive factor (ERF) and ethylene responsive nuclear protein (ERF2), and early responsive dehydration gene (ERD) might be related to the possible causes of defoliation in susceptible genotypes. The identified disease resistance genes can be deployed in genomics-assisted breeding for development of LLS resistant cultivars to reduce the yield loss in groundnut. [ABSTRACT FROM AUTHOR]

Aflatoxin B1 (AFB1) and aflatoxin B2 (AFB2) are the most common aflatoxins produced by Aspergillus flavus in peanuts, with high carcinogenicity and teratogenicity. Identification of DNA markers associated with resistance to aflatoxin production is likely to offer breeders efficient tools to develop resistant cultivars through molecular breeding. In this study, seeds of 99 accessions of a Chinese peanut mini-mini core collection were investigated for their reaction to aflatoxin production by a laboratory kernel inoculation assay. Two resistant accessions (Zh.h0551 and Zh.h2150) were identified, with their aflatoxin content being 8.11%–18.90% of the susceptible control. The 99 peanut accessions were also genotyped by restriction site-associated DNA sequencing (RAD-Seq) for a genome-wide association study (GWAS). A total of 60 SNP (single nucleotide polymorphism) markers associated with aflatoxin production were detected, and they explained 16.87%–31.70% of phenotypic variation (PVE), with SNP02686 and SNP19994 possessing 31.70% and 28.91% PVE, respectively. Aflatoxin contents of accessions with "AG" (existed in Zh.h0551 and Zh.h2150) and "GG" genotypes of either SNP19994 or SNP02686 were significantly lower than that of "AA" genotypes in the mean value of a three-year assay. The resistant accessions and molecular markers identified in this study are likely to be helpful for deployment in aflatoxin resistance breeding in peanuts. [ABSTRACT FROM AUTHOR]

Nitrogen is one of the essential plant nutrients and a major factor limiting crop productivity. To meet the requirements of sustainable agriculture, there is a need to maximize biological nitrogen fixation in different crop species. Legumes are able to establish root nodule symbiosis (RNS) with nitrogen-fixing soil bacteria which are collectively called rhizobia. This mutualistic association is highly specific, and each rhizobia species/strain interacts with only a specific group of legumes, and vice versa. Nodulation involves multiple phases of interactions ranging from initial bacterial attachment and infection establishment to late nodule development, characterized by a complex molecular signalling between plants and rhizobia. Characteristically, legumes like groundnut display a bacterial invasion strategy popularly known as "crack-entry" mechanism, which is reported approximately in 25% of all legumes. This article accommodates critical discussions on the bacterial infection mode, dynamics of nodulation, components of symbiotic signalling pathway, and also the effects of abiotic stresses and phytohormone homeostasis related to the root nodule symbiosis of groundnut and Bradyrhizobium. These parameters can help to understand how groundnut RNS is programmed to recognize and establish symbiotic relationships with rhizobia, adjusting gene expression in response to various regulations. This review further attempts to emphasize the current understanding of advancements regarding RNS research in the groundnut and speculates on prospective improvement possibilities in addition to ways for expanding it to other crops towards achieving sustainable agriculture and overcoming environmental challenges. [ABSTRACT FROM AUTHOR]

Aflatoxin is considered a "hidden poison" due to its slow and adverse effect on various biological pathways in humans, particularly among children, in whom it leads to delayed development, stunted growth, liver damage, and liver cancer. Unfortunately, the unpredictable behavior of the fungus as well as climatic conditions pose serious challenges in precise phenotyping, genetic prediction and genetic improvement, leaving the complete onus of preventing aflatoxin contamination in crops on post-harvest management. Equipping popular crop varieties with genetic resistance to aflatoxin is key to effective lowering of infection in farmer's fields. A combination of genetic resistance for in vitro seed colonization (IVSC), pre-harvest aflatoxin contamination (PAC) and aflatoxin production together with pre- and post-harvest management may provide a sustainable solution to aflatoxin contamination. In this context, modern "omics" approaches, including next-generation genomics technologies, can provide improved and decisive information and genetic solutions. Preventing contamination will not only drastically boost the consumption and trade of the crops and products across nations/regions, but more importantly, stave off deleterious health problems among consumers across the globe. [ABSTRACT FROM AUTHOR]

Gall bladder cancer (GBC) is common among the socioeconomically deprived populations of certain geographical regions. Aflatoxin is a genotoxic hepatocarcinogen, which is recognized to have a role in the pathogenesis of hepatocellular carcinoma. However, the role of aflatoxin in the pathogenesis of GBC is largely unknown. We determined serum AFB1-Lys albumin adduct (AAA) levels as a marker of aflatoxin exposure in the patients with GBC and compared to those without GBC. The relationship of AAA levels to cytogenetic (TP53mutation&HER2/neu amplification) and radiological characteristics of the tumor was assessed. We included GBC cases (n = 51) and non-GBC controls (n = 100). Mean serum AAA levels were higher in the GBC group (n = 51) than those without GBC (n = 100) (26.1 ± 12.2 vs. 13.1 ± 11.9 ng/mL; p < .001). HER2/neu expression was associated with higher AAA levels compared to those with equivocal or negative expression (43.9 ± 3 vs. 28.6 ± 10 vs. 19.3 ± 7 ng/mL; p < .001). Older age (age >50 years) (odds ratio [OR] = 3.2 [CI: 1.3-8.2]; p = .013), positive Helicobacter pylori serology (OR = 5.1 [CI: 1.4-17.8]; p = .012), presence of GS (OR = 5 [CI: 1.5-16.9]; p = .009) and detectable AAA levels (OR = 6.8 [CI: 1.3-35.7]; p = .024) were independent risk factors for the presence of the GBC among all study subjects. Among patients harboring GS, older age (age >50 years) (OR = 4.5 [CI: 1.3-14.9]; p = .015), female gender (OR = 3.8 [CI: 1.2-12.5]; p = .027), presence of multiple GS (OR = 21.9 [CI: 4.8-100.4]; p < .001) and high serum AAA levels (OR = 5.3 [CI: 1.6-17.3]; p = .006) were independent risk factors for the presence of the GBC. Elderly age >50 years (OR = 2.6 [CI: 1.3-5.2]; p = .010) and frequent peanut consumption (OR = 2.3 [CI: 1.1-4.9]; p = .030) were independent risk factors for high serum AAA levels. The current study has implications for the prevention of GBC through the reduction of dietary aflatoxin exposure., (© 2024 UICC.)

Peanut stem rot caused by Athelia rolfsii is a serious soilborne disease worldwide and is becoming increasingly important in China. A total of 293 A . rolfsii isolates were collected from four representative peanut producing provinces in northern, central, and southern China. These isolates were assigned to 45 mycelial compatibility groups (MCGs) through pairing testing. The MCG diversity among isolates was greater in the southern sampled provinces compared with the northern provinces. A high level of genetic variability was found among the isolates from Guangdong Province in southern China. Variations were found in mycelial growth rate and sclerotial number, size, and dry weight of isolates sampled from places in different latitudes. Size and dry weight of sclerotia were positively correlated with latitude ( P < 0.01), but the number of sclerotia was negatively correlated with latitude ( P < 0.01). All tester isolates were pathogenic on peanut but varied in disease index. Inter-simple sequence repeat analysis and unweighted pair-group method with arithmetic average clustering resulted in three distinct clusters that were associated with the geographical location of the collection sites and sclerotial traits but were not associated with virulence of these isolates. These findings imply that genetic diversity, morphological traits, and virulence among A . rolfsii isolates varied in diverse geographical regions in China, and genetic diversity and sclerotial traits might be affected by latitude.

Peanut allergy is an important health concern among many individuals. As there is no effective treatment to peanut allergy, continuous monitoring of peanut-based products, and their sources is essential. Precise detection of peanut allergens is key for identification and development of improved peanut varieties with minimum or no allergens in addition to estimating the levels in peanut-based products available in food chain. The antibody based ELISA protocol along with sample preparation was standardized for Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8 to estimate their quantities in peanut seeds. Three different dilutions were optimized to precisely quantify target allergen proteins in peanut seeds such as Ara h 1 (1/1,000, 1/2,000, and 1/4,000), Ara h 2 and Ara h 3 (1/5,000, 1/10,000, and 1/20,000), Ara h 6 (1/40,000, 1/80,000, and 1/1,60,000), and Ara h 8 (1/10, 1/20, and 1/40). These dilutions were finalized for each allergen based on the accuracy of detection by achieving <20% coefficient of variation in three technical replicates. This protocol captured wide variation of allergen proteins in selected peanut genotypes for Ara h 1 (77-46,106 μg/g), Ara h 2 (265-5,426 μg/g), Ara h 3 (382-12,676 μg/g), Ara h 6 (949-43,375 μg/g), and Ara h 8 (0.385-6 μg/g). The assay is sensitive and reliable in precise detection of five major peanut allergens in seeds. Deployment of such protocol allows screening of large scale germplasm and breeding lines while developing peanut varieties with minimum allergenicity to ensure food safety.

Aflatoxin contamination, caused by fungal pathogen Aspergillus flavus, is a major quality and health problem delimiting the trade and consumption of groundnut (Arachis hypogaea L.) worldwide. RNA-seq approach was deployed to understand the host-pathogen interaction by identifying differentially expressed genes (DEGs) for resistance to in-vitro seed colonization (IVSC) at four critical stages after inoculation in J 11 (resistant) and JL 24 (susceptible) genotypes of groundnut. About 1,344.04 million sequencing reads have been generated from sixteen libraries representing four stages in control and infected conditions. About 64% and 67% of quality filtered reads (1,148.09 million) were mapped onto A (A. duranensis) and B (A. ipaёnsis) subgenomes of groundnut respectively. About 101 million unaligned reads each from J 11 and JL 24 were used to map onto A. flavus genome. As a result, 4,445 DEGs including defense-related genes like senescence-associated proteins, resveratrol synthase, 9s-lipoxygenase, pathogenesis-related proteins were identified. In A. flavus, about 578 DEGs coding for growth and development of fungus, aflatoxin biosynthesis, binding, transport, and signaling were identified in compatible interaction. Besides identifying candidate genes for IVSC resistance in groundnut, the study identified the genes involved in host-pathogen cross-talks and markers that can be used in breeding resistant varieties.