36 results on '"Svitel J"'
Search Results
2. 1H NMR Ganglioside Ceramide Resonance Region on the Differential Diagnosis of Low and High Malignancy of Brain Gliomas
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Lombardi, V., Valko, L., Valko, M., Scozzafava, A., Morris, H., Melnik, M., Svitel, J., Budešinský, M., Pelnár, J., Steno, J., Liptaj, T., Zalibera, L., Budinská, J., Zlatoš, J., Giuliani, A., Mascolo, L., and Leibfritz, D.
- Published
- 1997
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3. Oxygen supply using modified Aspergillus niger mycelium and hydrogen peroxide
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Rosenberg, M. and Svitel, J.
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- 1991
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4. Determination of citrate by FIA using immobilized Enterobacter aerogenes cells and enzyme thermistor/flow microcalorimeter detection
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Svitel, J., Vostiar, I., Gemeiner, P., and Danielsson, B.
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- 1997
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5. Influence of mannan epitopes in glycoproteins–Concanavalin A interaction. Comparison of natural and synthetic glycosylated proteins
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Mislovičová, D, Masárová, J, Švitel, J, and Gemeiner, P
- Published
- 2002
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6. Erratum to: 1H NMR Ganglioside Ceramide Resonance Region on the Differential Diagnosis of Low and High Malignancy of Brain Gliomas
- Author
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Lombardi, V., Valko, L., Valko, M., Scozzafava, A., Morris, H., Melnik, M., Svitel, J., Budešinský, M., Pelnár, J., Steno, J., Liptaj, T., Zalibera, L., Budinská, J., Zlatoš, J., Giuliani, A., Mascolo, L., and Leibfritz, D.
- Published
- 1998
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7. Effect of immobilised cell concentration on beer quality in continuous fermentation.
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Šmogrovičová, D., Dömény, Z., and Svitel, J.
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- 1998
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8. 1H NMR Ganglioside Ceramide Resonance Region on the Differential Diagnosis of Low and High Malignancy of Brain Gliomas.
- Author
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Lombardi, V., Valko, L., Valko, M., Scozzafava, A., Morris, H., Melnik, M., Svitel, J., Budešinský, M., Pelnár, J., Steno, J., Liptaj, T., Zalibera, L., Budinská, J., Zlatoš, J., Giuliani, A., Mascolo, L., and Leibfritz, D.
- Abstract
1. The high-resolution
1 H NMR (MRS) spectra of human brain tumor homogenates revealed a broad resonance at 5.3–5.4 ppm in glioblastoma multiforme ( N = 16) and brain metastases ( N = 2). The broad resonance was identified as ceramide, a sphingosine–fatty acid combination portion of ganglioside, indicating an elevated abundance of monounsaturated fatty acids. GLC analysis of gangliosides in the highly malignant glioblastoma multiforme revealed that the elevated monounsaturated fatty acid is oleic acid (C18:1). The resonance at 5.3–5.4 ppm region was not detectable in normal human brain ( N = 2), in meningiomas ( N = 2), or in low-grade astrocytomas ( N = 12). In normal human brain the abundance of monounsaturated fatty acid is minimal. 2. This investigation was made possible because the method of producing homogenate resulted in (i) no loss of lipids during the process and (ii) a well-homogenised sample, with (iii) no loss in chemical integrity. 3. The properties of tumor gangliosides include antigenic specificity and immunosuppresive activity and the ceramide, a sphingosine–fatty acid combination, noticeably influences the ganglioside immunosuppressive activity. 4. The observation of1 H NMR ceramide resonance in high-malignant brain tumors emphasizes the dramatic role of aberrant gangliosides and ceramide precursors on the grade of malignancy and invasiveness. 5. Further insight into the specific nature of the ceramide portion of gangliosides in grading the malignancy of brain tumors should be investigated further. [ABSTRACT FROM AUTHOR]- Published
- 1997
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9. D-Galactose transformation to D-galactonic acid by Gluconobacter oxydans
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Švitel, J. and Šturdík, E.
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- 1994
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10. Contamination of plants with strontium 90
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Svitel, J
- Published
- 1974
11. Native MS Analysis of Bacteriorhodopsin and an Empty Nanodisc by Orthogonal Acceleration Time-of-Flight, Orbitrap and Ion Cyclotron Resonance.
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Campuzano ID, Li H, Bagal D, Lippens JL, Svitel J, Kurzeja RJ, Xu H, Schnier PD, and Loo JA
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- Cyclotrons, Fourier Analysis, Halobacterium salinarum chemistry, Models, Molecular, Nanostructures chemistry, Protein Conformation, Purple Membrane chemistry, Bacteriorhodopsins chemistry, Glucosides chemistry, Mass Spectrometry methods, Micelles
- Abstract
Over the past two decades, orthogonal acceleration time-of-flight has been the de facto analyzer for solution and membrane-soluble protein native mass spectrometry (MS) studies; this however is gradually changing. Three MS instruments are compared, the Q-ToF, Orbitrap, and the FT-ICR, to analyze, under native instrument and buffer conditions, the seven-transmembrane helical protein bacteriorhodopsin-octylglucoside micelle and the empty nanodisc (MSP1D1-Nd) using both MS and tandem-MS modes of operation. Bacteriorhodopsin can be released from the octylglucoside-micelle efficiently on all three instruments (MS-mode), producing a narrow charge state distribution (z = 8+ to 10+) by either increasing the source lens or collision cell (or HCD) voltages. A lower center-of-mass collision energy (0.20-0.41 eV) is required for optimal bacteriorhodopsin liberation on the FT-ICR, in comparison to the Q-ToF and Orbitrap instruments (0.29-2.47 eV). The empty MSP1D1-Nd can be measured with relative ease on all three instruments, resulting in a highly complex spectrum of overlapping, polydisperse charge states. There is a measurable difference in MSP1D1-Nd charge state distribution (z = 15+ to 26+), average molecular weight (141.7 to 169.6 kDa), and phospholipid incorporation number (143 to 184) under low activation conditions. Utilizing tandem-MS, bacteriorhodopsin can be effectively liberated from the octylglucoside-micelle by collisional (Q-ToF and FT-ICR) or continuous IRMPD activation (FT-ICR). MSP1D1-Nd spectral complexity can also be significantly reduced by tandem-MS (Q-ToF and FT-ICR) followed by mild collisional or continuous IRMPD activation, resulting in a spectrum in which the charge state and phospholipid incorporation levels can easily be determined.
- Published
- 2016
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12. Glycan and lectin microarrays for glycomics and medicinal applications.
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Katrlík J, Svitel J, Gemeiner P, Kozár T, and Tkac J
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- Animals, Carbohydrates chemistry, Cell Line, Epitopes chemistry, Escherichia coli metabolism, Humans, Kinetics, Ligands, Models, Molecular, Neoplasms metabolism, Signal Transduction, Glycomics methods, Lectins chemistry, Polysaccharides chemistry
- Abstract
Three different array formats to study a challenging field of glycomics are presented here, based on the use of a panel of immobilized glycan or lectins, and on in silico computational approach. Glycan and lectin arrays are routinely used in combination with other analytical tools to decipher a complex nature of glycan-mediated recognition responsible for signal transduction of a broad range of biological processes. Fundamental aspects of the glycan and lectin array technology are discussed, with the focus on the choice and availability of the biorecognition elements, fabrication protocols, and detection platforms involved. Moreover, practical applications of both technologies especially in the field of clinical diagnostics are provided. The future potential of a complementary in silico array technology to reveal details of the protein-glycan-binding profiles is discussed here., ((c) 2010 Wiley Periodicals, Inc.)
- Published
- 2010
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13. Precision of protein aggregation measurements by sedimentation velocity analytical ultracentrifugation in biopharmaceutical applications.
- Author
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Gabrielson JP, Arthur KK, Stoner MR, Winn BC, Kendrick BS, Razinkov V, Svitel J, Jiang Y, Voelker PJ, Fernandes CA, and Ridgeway R
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- Chromatography, Gel, Protein Binding, Protein Conformation, Proteins chemistry, Proteins analysis, Ultracentrifugation methods
- Abstract
Sedimentation velocity analytical ultracentrifugation (SV-AUC) is routinely applied in biopharmaceutical development to measure levels of protein aggregation in protein products. SV-AUC is free from many limitations intrinsic to size exclusion chromatography (SEC) such as mobile phase and column interaction effects on protein self-association. Despite these clear advantages, SV-AUC exhibits lower precision measurements than corresponding measurements by SEC. The precision of SV-AUC is influenced by numerous factors, including sample characteristics, cell alignment, centerpiece quality, and data analysis approaches. In this study, we evaluate the precision of SV-AUC in its current practice utilizing a multilaboratory, multiproduct intermediate precision study. We then explore experimental approaches to improve SV-AUC measurement precision, with emphasis on utilization of high quality centerpieces.
- Published
- 2010
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14. Membrane-bound dehydrogenases from Gluconobacter sp.: interfacial electrochemistry and direct bioelectrocatalysis.
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Tkac J, Svitel J, Vostiar I, Navratil M, and Gemeiner P
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- Biocatalysis, Bioelectric Energy Sources microbiology, Electrochemistry, Gluconobacter cytology, Gluconobacter metabolism, Cell Membrane metabolism, Gluconobacter enzymology, Oxidoreductases chemistry, Oxidoreductases metabolism
- Abstract
Although membrane-bound dehydrogenases isolated from Gluconobacter sp. (mainly PQQ-dependent alcohol and fructose dehydrogenase) have been used for preparing diverse forms of bioelectronic interfaces for almost 2 decades, it is not an easy task to interpret an electrochemical behaviour correctly. Recent discoveries regarding redox properties of membrane-bound dehydrogenases along with extensive investigations of direct electron transfer (DET) or direct bioelectrocatalysis with these enzymes are summarized in this review. The main aim of this review is to draw general conclusions about possible electronic coupling paths of these enzymes on various interfaces via direct electron transfer or direct bioelectrocatalysis. A short overview of the metabolism and respiration chain in Gluconobacter relevant to interfacial electrochemistry is given. Biosensor devices based on DET or direct bioelectrocatalysis using membrane-bound dehydrogenases from Gluconobacter sp. are described briefly with the emphasis given on practical applications of preparing enzymatic biofuel cells. Moreover, interfacial electrochemistry of Gluconobacter oxydans related to the construction of microbial biofuel cells is also discussed.
- Published
- 2009
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15. Response of a concentrated monoclonal antibody formulation to high shear.
- Author
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Bee JS, Stevenson JL, Mehta B, Svitel J, Pollastrini J, Platz R, Freund E, Carpenter JF, and Randolph TW
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- Drug Stability, Immunoglobulin G chemistry, Protein Stability, Antibodies, Monoclonal chemistry, Stress, Mechanical
- Abstract
There is concern that shear could cause protein unfolding or aggregation during commercial biopharmaceutical production. In this work we exposed two concentrated immunoglobulin-G1 (IgG1) monoclonal antibody (mAb, at >100 mg/mL) formulations to shear rates between 20,000 and 250,000 s(-1) for between 5 min and 30 ms using a parallel-plate and capillary rheometer, respectively. The maximum shear and force exposures were far in excess of those expected during normal processing operations (20,000 s(-1) and 0.06 pN, respectively). We used multiple characterization techniques to determine if there was any detectable aggregation. We found that shear alone did not cause aggregation, but that prolonged exposure to shear in the stainless steel parallel-plate rheometer caused a very minor reversible aggregation (<0.3%). Additionally, shear did not alter aggregate populations in formulations containing 17% preformed heat-induced aggregates of a mAb. We calculate that the forces applied to a protein by production shear exposures (<0.06 pN) are small when compared with the 140 pN force expected at the air-water interface or the 20-150 pN forces required to mechanically unfold proteins described in the atomic force microscope (AFM) literature. Therefore, we suggest that in many cases, air-bubble entrainment, adsorption to solid surfaces (with possible shear synergy), contamination by particulates, or pump cavitation stresses could be much more important causes of aggregation than shear exposure during production.
- Published
- 2009
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16. Multiscale requirements for bioencapsulation in medicine and biotechnology.
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de Vos P, Bucko M, Gemeiner P, Navrátil M, Svitel J, Faas M, Strand BL, Skjak-Braek G, Morch YA, Vikartovská A, Lacík I, Kolláriková G, Orive G, Poncelet D, Pedraz JL, and Ansorge-Schumacher MB
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- Alginates chemistry, Animals, Capsules, Glucuronic Acid chemistry, Hexuronic Acids chemistry, Humans, Polymers chemistry, Biotechnology, Pharmaceutical Preparations chemistry
- Abstract
Bioencapsulation involves the envelopment of tissues or biological active substances in semipermeable membranes. Bioencapsulation has been shown to be efficacious in mimicking the cell's natural environment and thereby improves the efficiency of production of different metabolites and therapeutic agents. The field of application is broad. It is being applied in bioindustry and biomedicine. It is clinically applied for the treatment of a wide variety of endocrine diseases. During the past decades many procedures to fabricate capsules have been described. Unfortunately, most of these procedures lack an adequate documentation of the characterization of the biocapsules. As a result many procedures show an extreme lab-to-lab variation and many results cannot be adequately reproduced. The characterization of capsules can no longer be neglected, especially since new clinical trials with bioencapsulated therapeutic cells have been initiated and the industrial application of bioencapsulation is growing. In the present review we discuss novel Approached to produce and characterize biocapsules in view of clinical and industrial application. A dominant factor in bioencapsulation is selection and characterization of suitable polymers. We present the adequacy of using high-resolution NMR for characterizing polymers. These polymers are applied for producing semipermeable membranes. We present the pitfalls of the currently applied methods and provide recommendations for standardization to avoid lab-to-lab variations. Also, we compare and present methodologies to produce biocompatible biocapsules for specific fields of applications and we demonstrate how physico-chemical technologies such as FT-IR, XPS, and TOF-SIMS contribute to reproducibility and standardization of the bioencapsulation process. During recent years it has become more and more clear that bioencapsulation requires a multidisciplinary approach in which biomedical, physical, and chemical technologies are combined. For adequate reproducibility and for understanding variations in outcome of biocapsules it is advisable if not mandatory to include the characterization processes presented in this review in future studies.
- Published
- 2009
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17. Lectinomics II. A highway to biomedical/clinical diagnostics.
- Author
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Gemeiner P, Mislovicová D, Tkác J, Svitel J, Pätoprstý V, Hrabárová E, Kogan G, and Kozár T
- Subjects
- Antibodies, Carbohydrates chemistry, Lectins chemistry, Mass Spectrometry, Microarray Analysis methods, Proteins metabolism, Lectins metabolism, Microarray Analysis trends
- Abstract
The review assesses current status and attempts to forecast trends in the development of lectin biorecognition technology. The progressive trend is characterized scientometrically and reflects the current transient situation, when standard low-throughput lectin-based techniques are being replaced by a novel microarray-based techniques offering high-throughput of detection. The technology is still in its infancy (validation phase), but already shows promise as an efficient tool to decipher the enormous complexity of the glycocode that influences physiological status of the cell. Further enhancement in robustness and flexibility of lectin microarrays is predicted by using recombinant and artificial lectins that will render production of lectin microarrays cost-effective and more affordable. Mass spectrometry is expected to play an important role to characterize the binding profile of new lectins. Differences in glycan recognition by lectins and anti-carbohydrate antibodies are given on a molecular basis, and strong and weak points of both biorecognition molecules in diagnosis are briefly discussed.
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- 2009
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18. Bayesian analysis of heterogeneity in the distribution of binding properties of immobilized surface sites.
- Author
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Gorshkova II, Svitel J, Razjouyan F, and Schuck P
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- Algorithms, Bayes Theorem, Binding Sites, Biosensing Techniques methods, Dextrans chemistry, Kinetics, Models, Chemical, Models, Statistical, Protein Binding, Software, Surface Properties, Proteins chemistry, Surface Plasmon Resonance methods
- Abstract
Once a homogeneous ensemble of a protein ligand is taken from solution and immobilized to a surface, for many reasons the resulting ensemble of surface binding sites to soluble analytes may be heterogeneous. For example, this can be due to the intrinsic surface roughness causing variations in the local microenvironment, nonuniform density distribution of polymeric linkers, or nonuniform chemical attachment producing different protein orientations and conformations. We previously described a computational method for determining the distribution of affinity and rate constants of surface sites from analysis of experimental surface binding data. It fully exploits the high signal/noise ratio and reproducibility provided by optical biosensor technology, such as surface plasmon resonance. Since the computational analysis is ill conditioned, the previous approach used a regularization strategy assuming a priori all binding parameters to be equally likely, resulting in the broadest possible parameter distribution consistent with the experimental data. We now extended this method in a Bayesian approach to incorporate the opposite assumption, i.e., that the surface sites a priori are expected to be uniform (as one would expect in free solution). This results in a distribution of binding parameters as close to monodispersity as possible given the experimental data. Using several model protein systems immobilized on a carboxymethyl dextran surface and probed with surface plasmon resonance, we show microheterogeneity of the surface sites in addition to broad populations of significantly altered affinity. The distributions obtained are highly reproducible. Immobilization conditions and the total surface density of immobilized sites can have a substantial impact on the functional distribution of the binding sites.
- Published
- 2008
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19. Probing the functional heterogeneity of surface binding sites by analysis of experimental binding traces and the effect of mass transport limitation.
- Author
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Svitel J, Boukari H, Van Ryk D, Willson RC, and Schuck P
- Subjects
- Antibodies, Monoclonal metabolism, Binding Sites, Biological Transport, Protein Binding, Surface Plasmon Resonance, Surface Properties, beta 2-Microglobulin metabolism, Biosensing Techniques
- Abstract
Many techniques rely on the binding activity of surface-immobilized proteins, including antibody-based affinity biosensors for the detection of analytes, immunoassays, protein arrays, and surface plasmon resonance biosensors for the study of thermodynamic and kinetic aspects of protein interactions. To study the functional homogeneity of the surface sites and to characterize their binding properties, we have recently proposed a computational tool to determine the distribution of affinity and kinetic rate constants from surface binding progress curves. It is based on modeling the experimentally measured binding signal as a superposition of signals from binding to sites spanning a range of rate and equilibrium constants, with regularization providing the most parsimonious distribution consistent with the data. In the present work, we have expanded the scope of this approach to include a compartment-like transport step, which can describe competitive binding to different surface sites in a zone of depleted analyte close to the sensor surface. This approach addresses a major difficulty in the analysis of surface binding where both transport limitation as well as unknown surface site heterogeneity may be present. In addition to the kinetic binding parameters of the ensemble of surface sites, it can provide estimates for effective transport rate constants. Using antibody-antigen interactions as experimental model systems, we studied the effects of the immobilization matrix and of the analyte flow-rate on the effective transport rate constant. Both were experimentally observed to influence mass transport. The approximate description of mass transport by a compartment model becomes critical when applied to strongly transport-controlled data, and we examined the limitations of this model. In the presence of only moderate mass transport limitation the compartment model provides a good description, but this approximation breaks down for strongly transport-limited surface binding. In the latter regime, we report experimental evidence for the formation of gradients within the sensing volume of the evanescent field biosensor used.
- Published
- 2007
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20. Gluconobacter in biosensors: applications of whole cells and enzymes isolated from Gluconobacter and Acetobacter to biosensor construction.
- Author
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Svitel J, Tkác J, Vostiar I, Navrátil M, Stefuca V, Bucko M, and Gemeiner P
- Subjects
- Acetobacter metabolism, Biosensing Techniques trends, Catalysis, Gluconobacter metabolism, Glucose analysis, Industrial Microbiology methods, Acetobacter cytology, Acetobacter enzymology, Biosensing Techniques instrumentation, Biosensing Techniques methods, Gluconobacter cytology, Gluconobacter enzymology
- Abstract
Bacteria belonging to the genus Acetobacter and Gluconobacter, and enzymes isolated from them, have been extensively used for biosensor construction in the last decade. Bacteria used as a biocatalyst are easy to prepare and use in amperometric biosensors. They contain multiple enzyme activities otherwise not available commercially. The range of compounds analyzable by Gluconobacter biosensors includes: mono- and poly-alcohols, multiple aldoses and ketoses, several disaccharides, triacylglycerols, and complex parameters like utilizable saccharides or biological O2 demand. Here, the recent trends in Gluconobacter biosensors and current practical applications are summarized.
- Published
- 2006
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21. Efficient neutralization of anthrax toxin by chimpanzee monoclonal antibodies against protective antigen.
- Author
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Chen Z, Moayeri M, Zhou YH, Leppla S, Emerson S, Sebrell A, Yu F, Svitel J, Schuck P, St Claire M, and Purcell R
- Subjects
- Amino Acid Sequence, Animals, Antibody Affinity, Antigens, Bacterial chemistry, Antigens, Bacterial toxicity, Bacterial Toxins chemistry, Bacterial Toxins toxicity, Epitope Mapping, Epitopes immunology, Female, Immunoglobulin Fragments immunology, Immunoglobulin Fragments isolation & purification, Immunoglobulin G immunology, Immunoglobulin Variable Region immunology, Immunoglobulin Variable Region isolation & purification, Macrophages immunology, Mice, Molecular Sequence Data, Neutralization Tests, Pan troglodytes, Peptide Library, Rats, Rats, Inbred F344, Receptors, Peptide metabolism, Antibodies, Monoclonal immunology, Antigens, Bacterial immunology, Bacterial Toxins antagonists & inhibitors, Bacterial Toxins immunology
- Abstract
Four single-chain variable fragments (scFvs) against protective antigen (PA) and 2 scFvs against lethal factor (LF) of anthrax were isolated from a phage display library generated from immunized chimpanzees. Only 2 scFvs recognizing PA (W1 and W2) neutralized the cytotoxicity of lethal toxin in a macrophage lysis assay. Full-length immunoglobulin G (IgG) of W1 and W2 efficiently protected rats from anthrax toxin challenge. The epitope recognized by W1 and W2 was conformational and was formed by C-terminal amino acids 614-735 of PA. W1 and W2 each bound to PA with an equilibrium dissociation constant of 4x10-11 mol/L to 5x10(-11) mol/L, which is an affinity that is 20-100-fold higher than that for the interaction of the receptor and PA. W1 and W2 inhibited the binding of PA to the receptor, suggesting that this was the mechanism of protection. These data suggest that W1 and W2 chimpanzee monoclonal antibodies may serve as PA entry inhibitors for use in the emergency prophylaxis against and treatment of anthrax.
- Published
- 2006
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22. Chimpanzee/human mAbs to vaccinia virus B5 protein neutralize vaccinia and smallpox viruses and protect mice against vaccinia virus.
- Author
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Chen Z, Earl P, Americo J, Damon I, Smith SK, Zhou YH, Yu F, Sebrell A, Emerson S, Cohen G, Eisenberg RJ, Svitel J, Schuck P, Satterfield W, Moss B, and Purcell R
- Subjects
- Amino Acid Sequence, Animals, Antibodies, Monoclonal isolation & purification, Epitopes immunology, Female, Humans, Immunoglobulin Fab Fragments immunology, Immunoglobulin Fab Fragments isolation & purification, Mice, Molecular Sequence Data, Neutralization Tests, Vaccinia virus chemistry, Vaccinia virus pathogenicity, Viral Proteins chemistry, Antibodies, Monoclonal immunology, Pan troglodytes immunology, Vaccinia immunology, Vaccinia prevention & control, Vaccinia virus immunology, Variola virus immunology, Viral Proteins immunology
- Abstract
Chimpanzee Fabs against the B5 envelope glycoprotein of vaccinia virus were isolated and converted into complete mAbs with human gamma 1 heavy chain constant regions. The two mAbs (8AH8AL and 8AH7AL) displayed high binding affinities to B5 (Kd of 0.2 and 0.7 nM). The mAb 8AH8AL inhibited the spread of vaccinia virus as well as variola virus (the causative agent of smallpox) in vitro, protected mice from subsequent intranasal challenge with virulent vaccinia virus, protected mice when administered 2 days after challenge, and provided significantly greater protection than that afforded by a previously isolated rat anti-B5 mAb (19C2) or by vaccinia immune globulin. The mAb bound to a conformational epitope between amino acids 20 and 130 of B5. These chimpanzee/human anti-B5 mAbs may be useful in the prevention and treatment of vaccinia virus-induced complications of vaccination against smallpox and may also be effective in the immunoprophylaxis and immunotherapy of smallpox.
- Published
- 2006
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23. Exposure of acidic residues as a danger signal for recognition of fibrinogen and other macromolecules by integrin alphaXbeta2.
- Author
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Vorup-Jensen T, Carman CV, Shimaoka M, Schuck P, Svitel J, and Springer TA
- Subjects
- Binding Sites, Cell Adhesion, Humans, K562 Cells, Neutrophils immunology, Recombinant Proteins chemistry, Recombinant Proteins immunology, Fibrinogen immunology, Integrin alphaXbeta2 chemistry, Integrin alphaXbeta2 immunology
- Abstract
The structural integrity of tissue proteins is damaged in processes ranging from remodeling of the extracellular matrix to destruction by microbial pathogens. Leukocytes play a prominent role in tissue surveillance and repair. However, it remains enigmatic what features of structurally decayed proteins prompt recognition by leukocyte cell-surface receptors. Here, we report that adhesion of human neutrophil granulocytes to fibrinogen is greatly increased by plasmin digestion in a mode where alphaXbeta2 dominates the integrin-dependent binding. The bacterial protease subtilisin also enhances binding by alphaXbeta2. The alphaX ligand binding domain has an unusually high affinity for carboxyl groups, with KD at approximately 100 microM. Our findings implicate enhanced accessibility of negatively charged residues in structurally decayed proteins as a pattern recognition motif for alphaXbeta2 integrin. Comparisons among integrins show relevance of these findings to the large number of ligands recognized by alphaMbeta2 and alphaXbeta2 but not alphaLbeta2. The observations suggest that the pericellular proteolysis at the leading edge of neutrophils not only facilitates passage through the extracellular matrix but also manufactures binding sites for alphaXbeta2.
- Published
- 2005
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24. Mannan-penicillin G acylase neoglycoproteins and their potential applications in biotechnology.
- Author
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Masárová J, Mislovicová D, Mendichi R, Svitel J, Gemeiner P, and Danielsson B
- Subjects
- Adsorption, Amination, Catalysis, Chemical Precipitation, Chromatography, Gel, Concanavalin A metabolism, Cross-Linking Reagents chemistry, Enzyme Stability, Escherichia coli enzymology, Kinetics, Lectins metabolism, Mannans chemistry, Molecular Weight, Oxidation-Reduction, Saccharomyces cerevisiae chemistry, Surface Plasmon Resonance, Bacterial Proteins metabolism, Biotechnology, Glycoproteins metabolism, Mannans metabolism, Penicillin Amidase metabolism
- Abstract
Mannan-penicillin G acylase neoglycoproteins were prepared by the conjugation of Saccharomyces cerevisiae mannan with enzyme penicillin G acylase using the reductive amination method. Eight neoglycoproteins preparations were obtained after gel chromatography. The preparations contained from 42 to 67% (w/w) saccharides and their molar masses varied from 283 to over 1000 kDa. Significant biospecific interaction of separated fractions with the lectin concanavalin A was evaluated by the precipitation and sorption method (equilibrium constants) and further characterized using surface plasmon resonance to determine kinetic association and dissociation constants. K (D) was determined over the range 10(-7) M. High-molar-mass preparations appeared to be more suitable for preparation of stable and active complexes with concanavalin A for prospective use as a penicillin G acylase biocatalyst in enzyme reactors. The enzyme stability of such complexes was significantly increased compared with the original neoglycoprotein. Lower-molar-mass preparations were more suitable for applications such as biocatalysts in bioanalytical devices.
- Published
- 2004
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25. Combined affinity and rate constant distributions of ligand populations from experimental surface binding kinetics and equilibria.
- Author
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Svitel J, Balbo A, Mariuzza RA, Gonzales NR, and Schuck P
- Subjects
- Binding Sites, Computer Simulation, Immunoglobulin Fab Fragments chemistry, Kinetics, Muramidase chemistry, Myoglobin chemistry, Nerve Tissue Proteins chemistry, Surface Properties, Algorithms, Biosensing Techniques methods, Models, Chemical, Models, Molecular, Protein Binding, Proteins chemistry
- Abstract
The present article considers the influence of heterogeneity in a mobile analyte or in an immobilized ligand population on the surface binding kinetics and equilibrium isotherms. We describe strategies for solving the inverse problem of calculating two-dimensional distributions of rate and affinity constants from experimental data on surface binding kinetics, such as obtained from optical biosensors. Although the characterization of a heterogeneous population of analytes binding to uniform surface sites may be possible under suitable experimental conditions, computational difficulties currently limit this approach. In contrast, the case of uniform analytes binding to heterogeneous populations of surface sites is computationally feasible, and can be combined with Tikhonov-Phillips and maximum entropy regularization techniques that provide the simplest distribution that is consistent with the data. The properties of this ligand distribution analysis are explored with several experimental and simulated data sets. The resulting two-dimensional rate and affinity constant distributions can describe well experimental kinetic traces measured with optical biosensors. The use of kinetic surface binding data can give significantly higher resolution than affinity distributions from the binding isotherms alone. The shape and the level of detail of the calculated distributions depend on the experimental conditions, such as contact times and the concentration range of the analyte. Despite the flexibility introduced by considering surface site distributions, the impostor application of this model to surface binding data from transport limited binding processes or from analyte distributions can be identified by large residuals, if a sufficient range of analyte concentrations and contact times are used. The distribution analysis can provide a rational interpretation of complex experimental surface binding kinetics, and provides an analytical tool for probing the homogeneity of the populations of immobilized protein.
- Published
- 2003
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26. Affinity analysis of lectin interaction with immobilized C- and O- gylcosides studied by surface plasmon resonance assay.
- Author
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Nahálková J, Svitel J, Gemeiner P, Danielsson B, Pribulová B, and Petrus L
- Subjects
- Concanavalin A pharmacology, Glycosylation, Kinetics, Ligands, Models, Chemical, Surface Plasmon Resonance, Time Factors, Biophysics methods, Biosensing Techniques, Glycosides chemistry, Lectins chemistry
- Abstract
A biosensor based on the surface plasmon resonance (SPR) principle was used for kinetic analysis of lectin interactions with different immobilized saccharide structures. A novel affinity ligands beta-D-glycopyranosylmethylamines derived from common D-aldohexoses linked to the carboxymethyl dextran layer of the SPR sensor surface served for interactions with a wide range of lectins. The method of preparation and use of the beta-D-mannopyranosyl glycosylated sensor surface was described. The results of affinity analysis of lectin-ligand interactions were evaluated and compared with data obtained from measurements using commercially available p-aminophenyl alpha-D-glycopyranosides. Possible applications and advantages of C- and O-glycosylated SPR biosensors are discussed.
- Published
- 2002
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27. Gold-coated capillary based 2,4-dichlorophenoxyacetic acid chemi-luminescent assays: possibilities towards multianalysis.
- Author
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Ramanathan K, Dzgoev A, Svitel J, Rees Jonsson B, and Danielsson B
- Subjects
- Equipment Design, Luminescent Measurements, Sensitivity and Specificity, 2,4-Dichlorophenoxyacetic Acid analysis, Gold chemistry, Herbicides analysis, Immunoassay instrumentation, Immunoassay methods
- Abstract
The application of gold-coated glass capillaries for the design of a sensitive chemiluminescent immunoassay for 2,4-dichlorophenoxyacetic acid (2,4-D) is reported. The gold coating on the glass capillaries has been partially characterized and its effect on enhancing the signal intensity has been measured. A simple photo-multiplier tube-based photon detector is used for this purpose. At least three times improvement in the signal intensity is observed compared to uncoated glass capillaries, with a consequent improvement in the sensitivity of detection. Using such gold-coated glass capillaries, 2,4-D in the range 10(-9) to 10(-13) mol/l is detectable at a precision of +/-15% (CV%) and a limit of detection of 10(-15) mol/l is achievable. The possibility of using such gold-coated capillaries with a portable multianalytical set-up for field studies is also demonstrated.
- Published
- 2002
- Full Text
- View/download PDF
28. Neoglycoconjugates of mannan with bovine serum albumin and their interaction with lectin concanavalin A.
- Author
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Mislovicová D, Masárová J, Svitel J, Mendichi R, Soltés L, Gemeiner P, and Danielsson B
- Subjects
- Molecular Weight, Oxidation-Reduction, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae metabolism, Surface Plasmon Resonance, Concanavalin A chemistry, Glycoconjugates chemical synthesis, Glycoconjugates pharmacology, Mannans chemistry, Mannans pharmacology, Serum Albumin, Bovine chemistry
- Abstract
Neoglycoconjugates were prepared from mannan isolated from yeast Saccharomyces cerevisiae and activated by periodate oxidation to create aldehyde groups. Various degrees of oxidation introduced 11-28 aldehyde groups per mannan molecule and simultaneously resulted in a molar mass decrease from 46 to 44.5-31 kDa. The activated mannans were subsequently conjugated with bovine serum albumin forming neoglycoconjugates. Some parameters of these mannan-bovine serum albumin conjugates were characterized: saccharide content 25-30% w/w, molar mass within the range 169-246 kDa, and polydispersion (M(w)/M(n)) from 2.8 to 3.6. The interaction of these conjugates with lectin concanavalin A was studied using three different methods: (i) quantitative precipitation in solution; (ii) sorption to concanavalin A immobilized on bead cellulose; and (iii) kinetic measurement of the interaction by surface plasmon resonance. Quantitative precipitation assay showed only negligible differences in the precipitation course of original mannan and the corresponding mannan-bovine serum albumin conjugates. Both the sorption method (equilibrium method) and the surface plasmon resonance measurement (kinetic method) demonstrates that the values of dissociation constant K(D) of all synthetic neoglycoconjugates were within the range 10(-7) - 10(-8) mol x L(-1) (close to K(D) = 10(-8) mol x L(-1) determined by the sorption method for the original mannan). In conclusion, characterization of synthetic neoglycoconjugates confirmed that the method used for their preparation retained the ability of mannan moiety to interact with concanavalin A.
- Published
- 2002
- Full Text
- View/download PDF
29. Biomaterials for molecular electronics development of optical biosensor for retinol.
- Author
-
Ramanathan K, Svitel J, Dzgoev A, Sundaram PV, and Danielsson B
- Subjects
- Biotechnology instrumentation, Biotechnology methods, Glass, Horseradish Peroxidase chemistry, Hydrogen Peroxide chemistry, Luminescent Measurements, Luminol chemistry, Retinol-Binding Proteins chemistry, Surface Plasmon Resonance, Time Factors, Tretinoin chemistry, Biocompatible Materials, Biosensing Techniques, Electronics, Optics and Photonics, Vitamin A chemistry
- Abstract
Molecular electronics involves expertise from several branches of science. Various biomaterials and electronics are involved in the fabrication of such devices. While passive biomaterials are involved in anchoring the active biomolecules, the latter are involved in switching and/or signal transduction. In the present investigation we have used a glass-capillary-based approach to design a biosensor for retinol. The sensing element is retinol-binding protein (RBP). The affinity of retinoic-acid-horseradish peroxidase (conjugate) to RBP is tested using a surface plasmon resonance technique. A simple photomultiplier-tube-based system is exploited to monitor the chemiluminescent signal generated upon reaction of hydrogen peroxide and luminol with the conjugate bound to RBP. The photomultiplier tube is directly coupled to a computer for data logging.
- Published
- 2001
- Full Text
- View/download PDF
30. Development of a flow injection capillary chemiluminescent ELISA using an imprinted polymer instead of the antibody.
- Author
-
Surugiu L, Svitel J, Ye L, Haupt K, and Danielsson B
- Subjects
- 2,4-Dichlorophenoxyacetic Acid analysis, Herbicides analysis, Microscopy, Electron, Scanning, Peroxidases chemistry, Enzyme-Linked Immunosorbent Assay methods, Flow Injection Analysis methods, Luminescent Measurements, Polymers chemistry
- Abstract
A flow injection competitive assay analogous to enzyme immunoassays has been developed using a molecularly imprinted polymer instead of the antibody. A glass capillary was modified by covalently attaching an imprinted polymer to the inner capillary wall. The herbicide 2,4-dichlorophenoxyacetic acid was used as a model analyte. The analyte was labeled with tobacco peroxidase, and chemiluminescence was used for detection in combination with a photomultiplier tube or a CCD camera. In a competitive mode, the analyte-peroxidase conjugate was passed together with the free analyte through the polymer-coated capillary mounted in a flow system. After a washing step, the chemiluminescent substrate was injected and the bound fraction of the conjugate was quantified by measuring the intensity of the emitted light. Calibration curves corresponding to analyte concentrations ranging from 0.5 ng mL(-1) to 50 microg mL(-1) (2.25 nM-225 microM) were obtained. A lowered detection limit by 2 orders of magnitude was obtained when detection was done in discontinuous mode and the chemiluminescence light was conducted inside the photomultiplier tube by an optical fiber bundle, thus yielding a dynamic range of 5 pg mL(-1)-100 ng mL(-1) (22.5 pM-450 nM).
- Published
- 2001
- Full Text
- View/download PDF
31. Modeling of saccharide utilization in primary beer fermentation with yeasts immobilized in calcium alginate.
- Author
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Smogrovicová D, Dömmny Z, and Svitel J
- Subjects
- Beer, Fructose chemistry, Glucose chemistry, Glucuronic Acid, Hexuronic Acids, Kinetics, Maltose chemistry, Models, Chemical, Time Factors, Trisaccharides chemistry, Alginates pharmacology, Fermentation, Saccharomyces cerevisiae chemistry, Yeasts chemistry
- Abstract
Immobilized beer fermentation was studied using an industrial bottom-fermenting yeast strain Saccharomyces cerevisiae. The yeast cells were immobilized in 2.5% calcium alginate gel and used for brewing in a five-vessel cascade reactor. The fermentation was performed at 15 degrees C at various flow rates. A nonstructured mathematical model was developed to simulate the performance of continuous primary fermentation of lager beer. The model was based on the following variables: maltose, maltotriose, glucose, fructose, ethanol, and cell concentration. Experimental values of these variables were determined in samples taken at regular intervals. For experimental data fitting a nonlinear regression was used. Substrate consumption was characterized by specific substrate consumption rate and saturation constant. The values of these two parameters were optimized for all four substrates. Inhibition effects of substrates and product were analyzed using various inhibition patterns. Only the inhibition effect of maltose on maltose consumption was clearly identified. A good-fitting relationship for maltose inhibition was found, and inhibition constants were calculated.
- Published
- 2001
- Full Text
- View/download PDF
32. Surface plasmon resonance based pesticide assay on a renewable biosensing surface using the reversible concanavalin A monosaccharide interaction.
- Author
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Svitel J, Dzgoev A, Ramanathan K, and Danielsson B
- Subjects
- Immunoassay, 2,4-Dichlorophenoxyacetic Acid analysis, Biosensing Techniques, Concanavalin A metabolism, Glucose metabolism, Herbicides analysis, Surface Plasmon Resonance
- Abstract
A competitive immunoassay based on surface plasmon resonance (SPR) for the detection of the pesticide 2,4-dichlorophenoxyacetic acid (2,4-D) is reported. The novelty of the assay is based on the regeneration of the chip surface by the reversible interaction between monosaccharide (D-glucose) and lectin (Concanavalin A). Concanavalin A-2,4-D conjugate was chemically synthesized, purified and used for binding to the SPR chip modified with covalently bound alpha-D-glucose. The interaction between anti-2,4-D antibody and the surface-bound concanavalin A-2,4-D conjugate was monitored by surface plasmon resonance and the response was used for the quantification of 2,4-D. The dynamic range of the calibration curve was between 3 and 100 ng/ml. The demonstrated principle of surface regeneration based on the reversible sugar-lectin interaction may be of more general applicability in immunoassays.
- Published
- 2000
- Full Text
- View/download PDF
33. The development and applications of thermal biosensors for bioprocess monitoring.
- Author
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Ramanathan K, Rank M, Svitel J, Dzgoev A, and Danielsson B
- Subjects
- Automation, Catalysis, Enzymes, Fermentation, Food Technology, Monitoring, Physiologic instrumentation, Biosensing Techniques, Biotechnology instrumentation, Temperature
- Abstract
Enzyme thermistors are biosensors that use thermal resistors to measure the heat change caused by an enzymatic reaction. They combine the selectivity of enzymes with the sensitivity of biosensors and allow continuous analysis in a flow-injection mode. They can be used to monitor fermentation systems, biocatalysis, enzyme-catalysed synthesis and clinical and food technology. This article gives an overview of the general principles of enzyme thermistors, the sampling process and the ongoing developments in the field of bioprocess monitoring.
- Published
- 1999
- Full Text
- View/download PDF
34. Amperometric biosensors based on solid binding matrices applied in food quality monitoring.
- Author
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Miertus S, Katrlík J, Pizzariello A, Stred'anský M, Svitel J, and Svorc J
- Subjects
- Electrochemistry, Ethanol analysis, Fructose analysis, Glucose analysis, Lactic Acid analysis, Malates analysis, Biosensing Techniques, Food Analysis
- Abstract
Solid binding matrix (SBM) based composite transducers have been used for development of series of multibiosensor systems applicable in various fields. Here we present two hybrid three-channel multibiosensors for simultaneous amperometric operation in food quality control, i.e. glucose/fructose/ethanol multibiosensor, based on glucose oxidase/fructose dehydrogenase/alcohol dehydrogenase surface-modified enzyme electrodes and L-lactate/L-malate/sulfite multibiosensor, based on L-lactate dehydrogenase/L-malate dehydrogenase/sulfite oxidase surface-modified enzyme electrodes. Different parameters have been studied in order to optimize the response of the multibiosensor systems. The multibiosensor showed a good sensitivity, linear range and storage stability. The multibiosensors were used for the determination of glucose, fructose, ethanol, L-lactate, L-malate and sulfite in samples of wine, resulting in a good agreement with data certified by the supplier. Comparison of various designs, surface-modified, bulk-modified and thick-cover, of SBM based biosensors is studied on the example of fructose biosensor.
- Published
- 1998
- Full Text
- View/download PDF
35. Microbial cell-based biosensor for sensing glucose, sucrose or lactose.
- Author
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Svitel J, Curilla O, and Tkác J
- Subjects
- Acetobacteraceae chemistry, Acetobacteraceae metabolism, Gelatin, Kluyveromyces chemistry, Kluyveromyces metabolism, Membranes, Saccharomyces cerevisiae chemistry, Saccharomyces cerevisiae metabolism, Biosensing Techniques, Glucose analysis, Lactose analysis, Sucrose analysis
- Abstract
Biosensors for the determination of glucose, sucrose and lactose were based on a Clark-type oxygen electrode covered with a membrane containing microbial cells. The glucose-sensing membrane was prepared with intact cells of Gluconobacter oxydans immobilized in gelatin cross-linked with glutardialdehyde. The disaccharide-sensing membranes were prepared by co-immobilization of G. oxydans with cells of Saccharomyces cerevisiae containing invertase for sucrose determination and with permeabilized cells of Kluyveromyces marxianus containing beta-galactosidase for lactose determination. The strain of G. oxydans that we used was able to oxidize both anomers of glucose at the same rate; there was therefore no need for mutarotase co-immobilization in disaccharide-sensing membranes. The sensitivity of glucose sensor was 50 nA/mM, the range of the calibration curve was 0-0.8 mM, the response time was 2 min, and the response after 1 week of storage was 62% of the initial response. The parameters of the disaccharide sensors were similar: linear range of calibration curve up to 4 mM, response time 5 min. The activities of the sensors after 1 week of storage at ambient temperature were in the range 50-65% of the initial activity.
- Published
- 1998
36. [Determination of the water content in ointments using the capacity method].
- Author
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Havránek E, Hudec P, Svitel J, and Schiller P
- Subjects
- Chemistry, Pharmaceutical, Ointments, Water
- Published
- 1966
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