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The Covid-19 outbreak of 2020 has required many governments to develop and adopt mathematical-statistical models of the pandemic for policy and planning purposes. To this end, this work provides a tutorial on building a compartmental model using Susceptible, Exposed, Infected, Recovered, Deaths and Vaccinated (SEIRDV) status through time. The proposed model uses interventions to quantify the impact of various government attempts made to slow the spread of the virus. Furthermore, a vaccination parameter is also incorporated in the model, which is inactive until the time the vaccine is deployed. A Bayesian framework is utilized to perform both parameter estimation and prediction. Predictions are made to determine when the peak Active Infections occur. We provide inferential frameworks for assessing the effects of government interventions on the dynamic progression of the pandemic, including the impact of vaccination. The proposed model also allows for quantification of number of excess deaths averted over the study period due to vaccination., Comment: There are 22 pages and 11 figures in the submitted manuscript. arXiv admin note: substantial text overlap with arXiv:2005.12777

During the current COVID-19 pandemic, decision makers are tasked with implementing and evaluating strategies for both treatment and disease prevention. In order to make effective decisions, they need to simultaneously monitor various attributes of the pandemic such as transmission rate and infection rate for disease prevention, recovery rate which indicates treatment effectiveness as well as the mortality rate and others. This work presents a technique for monitoring the pandemic by employing an Susceptible, Exposed, Infected, Recovered Death model regularly estimated by an augmented particle Markov chain Monte Carlo scheme in which the posterior distribution samples are monitored via Multivariate Exponentially Weighted Average process monitoring. This is illustrated on the COVID-19 data for the State of Qatar.

Ecologists are interested in modeling the population growth of species in various ecosystems. Studying population dynamics can assist environmental managers in making better decisions for the environment. Traditionally, the sampling of species and tracking of populations have been recorded on a regular time frequency. However, sampling can be an expensive process due to available resources, money and time. Limiting sampling makes it challenging to properly track the growth of a population. Thus, we propose a new and novel approach to designing sampling regimes based on the dynamics associated with population growth models. This design study minimizes the amount of time ecologists spend in the field, while maximizing the information provided by the data.

Random allocation models used in clinical trials aid researchers in determining which of a particular treatment provides the best results by reducing bias between groups. Often however, this determination leaves researchers battling ethical issues of providing patients with unfavorable treatments. Many methods such as Play the Winner and Randomized Play the Winner Rule have historically been utilized to determine patient allocation, however, these methods are prone to the increased assignment of unfavorable treatments. Recently a new Bayesian Method using Decreasingly Informative Priors has been proposed by \citep{sabo2014adaptive}, and later \citep{donahue2020allocation}. Yet this method can be time consuming if MCMC methods are required. We propose the use of a new method which uses Dynamic Linear Model (DLM) \citep{harrison1999bayesian} to increase allocation speed while also decreasing patient allocation samples necessary to identify the more favorable treatment. Furthermore, a sensitivity analysis is conducted on multiple parameters. Finally, a Bayes Factor is calculated to determine the proportion of unused patient budget remaining at a specified cut off and this will be used to determine decisive evidence in favor of the better treatment.

The Covid-19 outbreak of 2020 has required many governments to develop mathematical-statistical models of the outbreak for policy and planning purposes. This work provides a tutorial on building a compartmental model using Susceptibles, Exposed, Infected, Recovered and Deaths status through time. A Bayesian Framework is utilized to perform both parameter estimation and predictions. This model uses interventions to quantify the impact of various government attempts to slow the spread of the virus. Predictions are also made to determine when the peak Active Infections will occur.

Toxicologists are often concerned with determining the dosage to which an individual can be exposed with an acceptable risk of adverse effect. These types of studies have been conducted widely in the past, and many novel approaches have been developed. Parametric techniques utilizing ANOVA and nonlinear regression models are well represented in the literature. The biggest drawback of parametric approaches is the need to specify the correct model. Recently, there has been an interest in nonparametric approaches to tolerable dosage estimation. In this work, we focus on the monotonically decreasing dose response model where the response is a percent to control. This poses two constraints to the nonparametric approach. The doseresponse function must be one at control (dose = 0), and the function must always be positive. Here we propose a Bayesian solution to this problem using a novel class of nonparametric models. A basis function developed in this research is the Alamri Monotonic spline (AM-spline). Our approach is illustrated using both simulated data and an experimental dataset from pesticide related research at the US Environmental Protection Agency.

The extraction of natural gas from the earth has been shown to be governed by differential equations concerning flow through a porous material. Recently, models such as fractional differential equations have been developed to model this phenomenon. One key issue with these models is estimating the fraction of the differential equation. Traditional methods such as maximum likelihood, least squares and even method of moments are not available to estimate this parameter as traditional calculus methods do not apply. We develop a Bayesian approach to estimate the fraction of the order of the differential equation that models transport in unconventional hydrocarbon reservoirs. In this paper, we use this approach to adequately quantify the uncertainties associated with the error and predictions. A simulation study is presented as well to assess the utility of the modeling approach.

Statistical calibration where the curve is nonlinear is important in many areas, such as analytical chemistry and radiometry. Especially in radiometry, instrument characteristics change over time, thus calibration is a process that must be conducted as long as the instrument is in use. We propose a dynamic Bayesian method to perform calibration in the presence of a curvilinear relationship between the reference measurements and the response variable. The dynamic calibration approach adequately derives time dependent calibration distributions in the presence of drifting regression parameters. The method is applied to microwave radiometer data and simulated spectroscopy data based on work by Lundberg and de Mar\'{e} (1980).

The problem of statistical calibration of a measuring instrument can be framed both in a statistical context as well as in an engineering context. In the first, the problem is dealt with by distinguishing between the 'classical' approach and the 'inverse' regression approach. Both of these models are static models and are used to estimate exact measurements from measurements that are affected by error. In the engineering context, the variables of interest are considered to be taken at the time at which you observe it. The Bayesian time series analysis method of Dynamic Linear Models (DLM) can be used to monitor the evolution of the measures, thus introducing an dynamic approach to statistical calibration. The research presented employs the use of Bayesian methodology to perform statistical calibration. The DLM's framework is used to capture the time-varying parameters that maybe changing or drifting over time. Two separate DLM based models are presented in this paper. A simulation study is conducted where the two models are compared to some well known 'static' calibration approaches in the literature from both the frequentist and Bayesian perspectives. The focus of the study is to understand how well the dynamic statistical calibration methods performs under various signal-to-noise ratios, r. The posterior distributions of the estimated calibration points as well as the 95% coverage intervals are compared by statistical summaries. These dynamic methods are applied to a microwave radiometry data set., Comment: 26 pages, 10 figures