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10 results on '"Mohapatra, T."'

1. Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

Author

Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., Liu, X., Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., and Liu, X.

Abstract

In Extended Data Fig. 1 of this Article, the labels ‘Market class’ and ‘Biological status’ were inadvertently swapped. In the corresponding figure legend, “Track 1: Biological status; Track 2: Market class;” should have been “Track 1: Market class; Track 2: Biological status;”. The original Article has been corrected online.

Published
2022

2. Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

Author

Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., Liu, X., Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquín, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., and Liu, X.

Abstract

In Extended Data Fig. 1 of this Article, the labels ‘Market class’ and ‘Biological status’ were inadvertently swapped. In the corresponding figure legend, “Track 1: Biological status; Track 2: Market class;” should have been “Track 1: Market class; Track 2: Biological status;”. The original Article has been corrected online.

Published
2022

3. A chickpea genetic variation map based on the sequencing of 3,366 genomes

Author

Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquin, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., Liu, X., Varshney, R.K., Roorkiwal, M., Sun, S., Bajaj, P., Chitikineni, A., Thudi, M., Singh, N.P., Du, X., Upadhyaya, H.D., Khan, A.W., Wang, Y., Garg, V., Fan, G., Cowling, W.A., Crossa, J., Gentzbittel, L., Voss-Fels, K.P., Valluri, V.K., Sinha, P., Singh, V.K., Ben, C., Rathore, A., Punna, R., Singh, M.K., Tar’an, B., Bharadwaj, C., Yasin, M., Pithia, M.S., Singh, S., Soren, K.R., Kudapa, H., Jarquin, D., Cubry, P., Hickey, L.T., Dixit, G.P., Thuillet, A-C, Hamwieh, A., Kumar, S., Deokar, A.A., Chaturvedi, S.K., Francis, A., Howard, R., Chattopadhyay, D., Edwards, D., Lyons, E., Vigouroux, Y., Hayes, B.J., von Wettberg, E., Datta, S.K., Yang, H., Nguyen, H.T., Wang, J., Siddique, K.H.M., Mohapatra, T., Bennetzen, J.L., Xu, X., and Liu, X.

Abstract

Zero hunger and good health could be realized by 2030 through effective conservation, characterization and utilization of germplasm resources1. So far, few chickpea (Cicer arietinum) germplasm accessions have been characterized at the genome sequence level2. Here we present a detailed map of variation in 3,171 cultivated and 195 wild accessions to provide publicly available resources for chickpea genomics research and breeding. We constructed a chickpea pan-genome to describe genomic diversity across cultivated chickpea and its wild progenitor accessions. A divergence tree using genes present in around 80% of individuals in one species allowed us to estimate the divergence of Cicer over the last 21 million years. Our analysis found chromosomal segments and genes that show signatures of selection during domestication, migration and improvement. The chromosomal locations of deleterious mutations responsible for limited genetic diversity and decreased fitness were identified in elite germplasm. We identified superior haplotypes for improvement-related traits in landraces that can be introgressed into elite breeding lines through haplotype-based breeding, and found targets for purging deleterious alleles through genomics-assisted breeding and/or gene editing. Finally, we propose three crop breeding strategies based on genomic prediction to enhance crop productivity for 16 traits while avoiding the erosion of genetic diversity through optimal contribution selection (OCS)-based pre-breeding. The predicted performance for 100-seed weight, an important yield-related trait, increased by up to 23% and 12% with OCS- and haplotype-based genomic approaches, respectively.

Published
2021

4. A SWEET solution to rice blight

Author

Varshney, R.K., Godwin, I.D., Mohapatra, T., Jones, J.D.G., McCouch, S.R., Varshney, R.K., Godwin, I.D., Mohapatra, T., Jones, J.D.G., and McCouch, S.R.

Abstract

Two studies offer a powerful strategy for combating bacterial blight in rice.

Published
2019

5. A SWEET solution to rice blight

Author

Varshney, R.K., Godwin, I.D., Mohapatra, T., Jones, J.D.G., McCouch, S.R., Varshney, R.K., Godwin, I.D., Mohapatra, T., Jones, J.D.G., and McCouch, S.R.

Abstract

Two studies offer a powerful strategy for combating bacterial blight in rice.

Published
2019

6. Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Author

Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., Xu, X., Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., and Xu, X.

Abstract

In the version of this article initially published, in the HTML, the wrong Creative Commons Attribution license (cc-by-nc rather than cc-by) was inserted. The error has been corrected in the HTML version of the article

Published
2018

7. Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Author

Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., Xu, X., Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E.S., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., and Xu, X.

Abstract

In the version of this article initially published, in the HTML, the wrong Creative Commons Attribution license (cc-by-nc rather than cc-by) was inserted. The error has been corrected in the HTML version of the article

Published
2018

8. Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Author

Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., Xu, X., Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., and Xu, X.

Abstract

Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the ∼1.79 Gb draft whole genome sequence of reference genotype Tift 23D2B1-P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.

Published
2017

9. Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Author

Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., Xu, X., Varshney, R.K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R.K., Chitikineni, A., Fan, G., Bajaj, P., Punnuri, S., Gupta, S.K., Wang, H., Jiang, Y., Couderc, M., Katta, M.A.V.S.K., Paudel, D.R., Mungra, K.D., Chen, W., Harris-Shultz, K.R., Garg, V., Desai, N., Doddamani, D., Kane, N.A., Conner, J.A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O.P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H.D., Cubry, P., Rhoné, B., Gueye, M.C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R.S., Singh, B., Yadav, R.S., Lyons, E., Datta, S.K., Hash, C.T., Devos, K.M., Buckler, E., Bennetzen, J.L., Paterson, A.H., Ozias-Akins, P., Grando, S., Mohapatra, T., Weckwerth, W., Reif, J.C., Liu, X., Vigouroux, Y., and Xu, X.

Abstract

Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the ∼1.79 Gb draft whole genome sequence of reference genotype Tift 23D2B1-P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.

Published
2017

10. A new approach in blast vibration analysis and prediction at iron ore mines.

Author

Singh P.K., Mohapatra T., Prasad A., Roy M.P., Sirveiya A.K., Singh P.K., Mohapatra T., Prasad A., Roy M.P., and Sirveiya A.K.

Abstract

This paper describes the results of a systematic study, carried out at iron ore mines in India, of uncertainties in vibration analysis due to problems in determining the actual amount of explosive detonated within a specific time interval and the number of holes effectively contributing to the resulting particle velocity. Guidelines were derived for determining the effective charge-weight in vibration analysis of blasts. Optimum delay intervals between detonations were recommended to control the impact of vibrations on structures., This paper describes the results of a systematic study, carried out at iron ore mines in India, of uncertainties in vibration analysis due to problems in determining the actual amount of explosive detonated within a specific time interval and the number of holes effectively contributing to the resulting particle velocity. Guidelines were derived for determining the effective charge-weight in vibration analysis of blasts. Optimum delay intervals between detonations were recommended to control the impact of vibrations on structures.

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