38 results on '"Rokka A"'
Search Results
2. Lipid-related thiamine deficiency cause mortality of river lampreys (Lampetra fluviatilis) during pre-spawning fasting
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Vuorinen, Pekka J., Juntunen, Esa-Pekka, Iivari, Juha, Koski, Perttu, Nikonen, Soili, Rokka, Mervi, Ritvanen, Tiina, Pakkala, Jukka, Heinimaa, Petri, and Keinänen, Marja
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- 2023
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3. The effects of climate and land use change on the potential distribution and nesting habitat of the Lesser Adjutant in Nepal
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Katuwal, Hem Bahadur, Sharma, Hari Prasad, Rokka, Prashant, Bhusal, Krishna Prasad, Bhattarai, Bishnu Prasad, Koirala, Sabina, Luitel, Sandeep Chhetri, Yadav, Shailendra, Sah, Ganesh, Baral, Hem Sagar, Poudyal, Laxman Prasad, Wang, Lin, and Quan, Rui-Chang
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- 2023
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4. A new method for measuring thyroid hormones using nano-LC-MS/MS
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Ruuskanen, Suvi, Hsu, Bin-Yan, Heinonen, Arttu, Vainio, Minna, Darras, Veerle M., Sarraude, Tom, and Rokka, Anne
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- 2018
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5. 18F-labeling syntheses and preclinical evaluation of functionalized nanoliposomes for Alzheimer's disease
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Rokka, Johanna, Snellman, Anniina, Kaasalainen, Martti, Salonen, Jarno, Zona, Cristiano, La Ferla, Barbara, Nicotra, Francesco, Re, Francesca, Masserini, Massimo, Forsback, Sarita, Lopez-Picon, Francisco, Rinne, Juha O., Haaparanta-Solin, Merja, and Solin, Olof
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- 2016
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6. Quantitative analysis of the erythrocyte membrane proteins in polycythemia vera patients treated with hydroxycarbamide
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Kottahachchi, Darshana, Gooneratne, Lallindra, Jayasekera, Anil, Muth-Pawlak, Dorota, Moulder, Robert, Imanishi, Susumu Y., Ariyaratne, Ari, Rokka, Anne, and Corthals, Garry L.
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- 2015
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7. APOE Genotype Disclosure and Lifestyle Advice in a Randomized Intervention Study with Finnish Participants.
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Leskinen, Heidi M, Tringham, Maaria, Karjalainen, Heli, Iso-Touru, Terhi K, Hietaranta-Luoma, Hanna-Leena, Marnila, Pertti J, Pihlava, Juha-Matti, Hurme, Timo, Kankaanpää, Santeri J, Puolijoki, Hannu, Åkerman, Kari, Tanner, Laura, Sandell, Mari, Vähäkangas, Kirsi, Hopia, Anu, Tahvonen, Raija, and Rokka, L Susanna
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GENOTYPES ,C-reactive protein ,FOOD consumption ,ALZHEIMER'S disease ,ADVICE ,ALLELES ,CARDIOVASCULAR diseases risk factors ,FAT content of food ,LIFESTYLES ,RESEARCH ,COUNSELING ,RESEARCH methodology ,CARDIOVASCULAR diseases ,DIET ,MEDICAL cooperation ,EVALUATION research ,COMPARATIVE studies ,RANDOMIZED controlled trials ,DISEASE susceptibility ,APOLIPOPROTEINS ,FATTY acids - Abstract
Background: The APOE ε4 allele is associated with higher risks of cardiovascular diseases and Alzheimer disease than ε3 and ε2.Objectives: We studied the effectiveness of dietary and lifestyle guidance and personal genetic risk information [ε4 carrier (ε4+); ε4 noncarrier (ε4-)] as motivators for a healthier lifestyle.Methods: A total of 188 healthy Finnish volunteers (82.4% women; mean ± SD age: 51.0 ± 5.6 y; BMI: 26.0 ± 3.6 kg/m2; total cholesterol: 5.2 ± 0.9 mmol/L) participated in our randomized intervention study. The participants were genotyped for APOE and divided into intervention (INT; INTε4+, n = 33; INTε4-, n = 57) and control groups (CTRL; CTRLε4+, n = 36; CTRLε4-, n = 62). Blood samples, measured observations, and questionnaire data were obtained at baseline and at 1 and 1.5 y. INT participants received their ε4 carrier status at baseline. Monthly Internet-based guidance based on the Finnish Dietary guidelines was provided for all.Results: The proportion of SFAs in plasma over time fluctuated less in INTε4+ than in the other groups (P-interaction < 0.05; primary outcome). The lifestyle guidance increased vegetable consumption from 3.5 to 3.6 portions/d, improved the dietary fat quality score by 5.3%, increased the plasma n-3 (ω-3) FA proportion by 7.3%, and decreased the consumption of high-fat/high-sugar foods from 7.3 to 6.5 portions/wk and total- and LDL-cholesterol concentrations by 4.3% and 6.1%, respectively, in the entire participant population (P < 0.05; secondary outcome). Compared with the ε4- participants, ε4+ participants had 2.4% higher plasma n-6 (ω-6) FA, lower C-peptide (3.9 compared with 4.2 nmol/L × h) and sensitive C-reactive protein values, and decreased plasma malondialdehyde concentrations over time (P < 0.05; secondary outcome).Conclusions: Lifestyle guidance given to healthy Finnish participants yielded small but beneficial changes. The INTε4+ group did not seem markedly more responsive to the guidance than the other groups.This trial was registered at clinicaltrials.gov as NCT03794141. [ABSTRACT FROM AUTHOR]- Published
- 2021
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8. Characterization of Immune Cell Populations of Cutaneous Neurofibromas in Neurofibromatosis 1.
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Kallionpää, Roope A., Peltonen, Sirkku, Le, Kim My, Martikkala, Eija, Jääskeläinen, Mira, Fazeli, Elnaz, Riihilä, Pilvi, Haapaniemi, Pekka, Rokka, Anne, Salmi, Marko, Leivo, Ilmo, and Peltonen, Juha
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- 2024
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9. Dynamics of convivial affective atmospheres.
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Rokka, Joonas, Auriacombe, Brigitte, Arnould, Eric, and Sitz, Lionel
- Abstract
This article examines the dynamics of affective atmospheres in explaining compelling touristic service experiences. Extending affect-theoretical research, we theorize and examine the role of affective bodily encounters through which convivial atmospheres are (re)produced. Based on multi-sited ethnographic research in iconic Club Med resorts, our findings emphasize the spontaneity and fragility of convivial affective atmospheres, meaning they are difficult to control, but also how their ongoing "bubbling" is shaped by materiality, ritual activities, and temporality. We contribute by (1) developing the concept of convivial affective atmosphere, and by (2) offering a theoretical framework that helps advance research into the affective entanglement and dynamics of atmospheres in tourism. Finally, we critically discuss what service providers can do to facilitate and re-produce convivial atmospheres. • We extend affect-theoretical research on atmospheres in tourism. • We theorize the re-production of convivial affective atmospheres. • We highlight the affective embodied encounters of customers and service employees. • We offer an extended ethnography of atmospheres at iconic Club Med holiday resorts. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Applicability of [11C]PIB micro-PET imaging for in vivo follow-up of anti-amyloid treatment effects in APP23 mouse model.
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Snellman, Anniina, Rokka, Johanna, López-Picón, Francisco R., Helin, Semi, Re, Francesca, Löyttyniemi, Eliisa, Pihlaja, Rea, Forloni, Gianluigi, Salmona, Mario, Masserini, Massimo, Solin, Olof, Rinne, Juha O., and Haaparanta-Solin, Merja
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ALZHEIMER'S disease diagnosis , *AMYLOID , *POSITRON emission tomography , *LIPOSOMES , *IMMUNOHISTOCHEMISTRY , *THERAPEUTICS - Abstract
In this study, we evaluated the anti-amyloid effect of functionalized nanoliposomes (mApoE-PA-LIP) in a mouse model of Alzheimer's disease with use of positron emission tomography and β-amyloid (Aβ)–targeted tracer [ 11 C]Pittsburgh compound B ([ 11 C]PIB). APP23 mice were injected with mApoE-PA-LIP or saline (3 times per week for 3 weeks) and [ 11 C]PIB imaging was performed at baseline, after the treatment and after 3 months follow-up period, accompanied by Aβ immunohistochemistry and ELISA. After the treatment, [ 11 C]PIB binding ratios between mApoE-PA-LIP and saline groups were equivalent in all analyzed brain regions; however, in the saline group, binding ratios increased from the baseline, whereas no increase was detected in the mApoE-PA-LIP group. During the additional follow-up, [ 11 C]PIB binding increased significantly from baseline in both groups, and binding ratios correlated with the immunohistochemically defined Aβ load. This study further supports the use of [ 11 C]PIB positron emission tomography imaging as a biomarker of Aβ deposition in APP23 mice and highlights the benefits of noninvasive follow-up, that is, using baseline data for animal stratification and normalization of treatment effects to baseline values, for future anti-amyloid treatment studies. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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11. HPLC and TLC methods for analysis of [18F]FDG and its metabolites from biological samples.
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Rokka, Johanna, Grönroos, Tove J., Viljanen, Tapio, Solin, Olof, and Haaparanta-Solin, Merja
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HIGH performance liquid chromatography , *THIN layer chromatography , *METABOLITES , *POSITRON emission tomography , *GLUCOSE , *METABOLISM - Abstract
The most used positron emission tomography (PET) tracer, 2-[ 18 F]fluoro-2-deoxy- d -glucose ([ 18 F]FDG), is a glucose analogue that is used to measure tissue glucose consumption. Traditionally, the Sokoloff model is the basis for [ 18 F]FDG modeling. According to this model, [ 18 F]FDG is expected to be trapped in a cell in the form of [ 18 F]FDG-6-phosphate ([ 18 F]FDG-6-P). However, several studies have shown that in tissues, [ 18 F]FDG metabolism goes beyond [ 18 F]FDG-6-P. Our aim was to develop radioHPLC and radioTLC methods for analysis of [ 18 F]FDG metabolites from tissue samples. The radioHPLC method uses a sensitive on-line scintillation detector to detect radioactivity, and the radioTLC method employs digital autoradiography to detect the radioactivity distribution on a TLC plate. The HPLC and TLC methods were developed using enzymatically in vitro– produced metabolites of [ 18 F]FDG as reference standards. For this purpose, three [ 18 F]FDG metabolites were synthesized: [ 18 F]FDG-6-P, [ 18 F]FD-PGL, and [ 18 F]FDG-1,6-P2. The two methods were evaluated by analyzing the [ 18 F]FDG metabolic profile from rodent ex vivo tissue homogenates. The HPLC method with an on-line scintillation detector had a wide linearity in a range of 5 Bq–5 kBq (LOD 46 Bq, LOQ 139 Bq) and a good resolution (Rs ≥1.9), and separated [ 18 F]FDG and its metabolites clearly. The TLC method combined with digital autoradiography had a high sensitivity in a wide range of radioactivity (0.1 Bq–2 kBq, LOD 0.24 Bq, LOQ 0.31 Bq), and multiple samples could be analyzed simultaneously. As our test and the method validation with ex vivo samples showed, both methods are useful, and at best they complement each other in analysis of [ 18 F]FDG and its radioactive metabolites from biological samples. [ABSTRACT FROM AUTHOR]
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- 2017
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12. P-095 - Synthesis and evaluation of fluorine-18 labelled tetrazines as pre-targeting imaging agents for amyloid PET-imaging.
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Schlein, Eva, Rokka, Johanna, Battisti, Umberto, Syvaenen, Stina, Herth, Matthias, Sehlin, Dag, and Eriksson, Jonas
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AMYLOID - Published
- 2022
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13. Chapter 13 - Liquid chromatography with conventional detection
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Rokka, Maervi, Jestoi, Marika, and Eerola, Susanna
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- 2007
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14. Cardiac remodeling in a new pig model of chronic heart failure: Assessment of left ventricular functional, metabolic, and structural changes using PET, CT, and echocardiography.
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Tarkia, Miikka, Stark, Christoffer, Haavisto, Matti, Kentala, Rasmus, Vähäsilta, Tommi, Savunen, Timo, Strandberg, Marjatta, Hynninen, Ville-Veikko, Saunavaara, Virva, Tolvanen, Tuula, Teräs, Mika, Rokka, Johanna, Pietilä, Mikko, Saukko, Pekka, Roivainen, Anne, Saraste, Antti, and Knuuti, Juhani
- Abstract
Aims: Large animal models are needed to study disease mechanisms in heart failure (HF). In the present study we characterized the functional, metabolic, and structural changes of myocardium in a novel pig model of chronic myocardial infarction (MI) by using multimodality imaging and histology. Methods and Results: Male farm pigs underwent a two-step occlusion of the left anterior descending coronary artery with concurrent distal ligation and implantation of a proximal ameroid constrictor (HF group), or sham operation (control group). Three months after the operation, cardiac output and wall stress were measured by echocardiography. Left ventricle (LV) volumes and mass were measured by computed tomography (CT). Myocardial perfusion was evaluated by [O]water and oxygen consumption using [C]acetate positron emission tomography, and the efficiency of myocardial work was calculated. Histological examinations were conducted to detect MI, hypertrophy, and fibrosis. Animals in the HF group had a large anterior MI scar. CT showed larger LV diastolic volume and lower ejection fraction in HF pigs than in controls. Perfusion and oxygen consumption in the remote non-infarcted myocardium were preserved in HF pigs as compared to controls. Global LV work and efficiency were significantly lower in HF than control pigs and was associated with increased wall stress. Histology showed myocyte hypertrophy but not increased interstitial fibrosis in the remote segments in HF pigs. Conclusions: The chronic post-infarction model of HF is suitable for studies aimed to evaluate LV remodeling and changes in oxidative metabolism and can be useful for testing new therapies for HF. [ABSTRACT FROM AUTHOR]
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- 2015
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15. Sex-specific differences in offspring personalities across the laying order in magpies Pica pica.
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Rokka, Kaisa, Pihlaja, Marjo, Siitari, Heli, and Soulsbury, Carl D.
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BIRD behavior , *GENDER differences (Psychology) , *BABY birds , *PERSONALITY , *PHENOTYPES , *EGG incubation , *BLACK-billed magpie - Abstract
Maternal effects provide an important mechanism for mothers to create variation in offspring personality, and to potentially influence offspring life history strategies e.g. creating more/less dispersive phenotypes. However, within-clutch maternal effects often vary and hence there is potential for within-clutch variation in personality. We studied the effects of hatching order on explorative and neophobic behaviour of the magpies Pica pica in relation to sex using novel environment and novel object experiments. Hatching order did affect explorative behaviour in magpie, but did so in opposite directions for either sex. First-hatched females were more explorative and had a tendency to be less neophobic, whereas in males, the reverse was true. Our results suggest that hormonal as well as post-natal environmental mechanisms could be underpinning this pattern. Future research is needed to fully understand the importance of both in creating different offspring personalities. This article is part of a Special Issue entitled: insert SI title. [ABSTRACT FROM AUTHOR]
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- 2014
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16. Synthesis and evaluation of a 18F-curcumin derivate for β-amyloid plaque imaging.
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Rokka, Johanna, Snellman, Anniina, Zona, Cristiano, La Ferla, Barbara, Nicotra, Francesco, Salmona, Mario, Forloni, Gianluigi, Haaparanta-Solin, Merja, Rinne, Juha O., and Solin, Olof
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ALZHEIMER'S disease treatment , *CURCUMIN , *AMYLOID , *NEUROPROTECTIVE agents , *OLIGOMERS , *LABORATORY mice , *RADIOCHEMISTRY - Abstract
Abstract: Introduction: Curcumin is a neuroprotective compound that inhibits the formation of amyloid oligomers and fibrils and binds to β-amyloid plaques in Alzheimer’s disease (AD). We aimed to synthesize an 18F-labeled curcumin derivate ([18F]4) and to characterize its positron emission tomography (PET) tracer-binding properties to β-amyloid plaques in a transgenic APP23 mouse model of AD. Methods: We utilized facile one-pot synthesis of [18F]4 using nucleophilic 18F-fluorination and click chemistry. Binding of [18F]4 to β-amyloid plaques in the transgenic APP23 mouse brain cryosections was studied in vitro using heterologous competitive binding against PIB. [18F]4 uptake was studied ex vivo in rodents and in vivo using PET/computed tomography of transgenic APP23 and wild-type control mice. Results: The radiochemical yield of [18F]4 was 21±11%, the specific activity exceeded 1TBq/μmol, and the radiochemical purity exceeded 99.3% at the end of synthesis. In vitro studies of [18F]4 with the transgenic APP23 mouse revealed high β-amyloid plaque binding. In vivo and ex vivo studies demonstrated that [18F]4 has fast clearance from the blood, moderate metabolism but low blood–brain barrier (BBB) penetration. Conclusions: [18F]4 was synthesized in high yield and excellent quality. In vitro studies, metabolite profile, and fast clearance from the blood indicated a promising tracer for Aβ imaging. However, [18F]4 has low in vivo BBB penetration and thus further studies are needed to reveal the reason for this and to possibly overcome this issue. [Copyright &y& Elsevier]
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- 2014
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17. P-119 - Efficient cartridge-based synthesis of a novel [18F]tetrazine for large molecule labelling.
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Rokka, Johanna, Syvaenen, Stina, Odell, Luke R., Schlein, Eva, Sehlin, Dag, and Eriksson, Jonas
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TETRAZINE , *MOLECULES - Published
- 2022
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18. P-118 - Synthesis of fluorine-18 labelled tetrazine and coupling to trans-cyclooctene functionalized Affibody molecules.
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Zhang, Bo, Rokka, Johanna, Lechi, Francesco, Eriksson, Olof, and Eriksson, Jonas
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TETRAZINE , *MOLECULES - Published
- 2022
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19. O-67 - Evaluation of Affibody molecule Z09591 for PET imaging in fibrosis.
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Wegrzyniak, Olivia, Rokka, Johanna, Zhang, Bo, Rosestedt, Maria, Cheung, Pierre, Mitran, Bogdan, Ingvast, Sofie, Puuvuori, Emmi, Pontén, Fredrik, Frejd, Fredrik, Korsgren, Olle, Eriksson, Jonas, and Eriksson, Olof
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POSITRON emission tomography , *FIBROSIS , *MOLECULES - Published
- 2022
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20. Enzymatic and physical modification of milk fat: A review
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Kontkanen, Hanna, Rokka, Susanna, Kemppinen, Asmo, Miettinen, Hanna, Hellström, Jarkko, Kruus, Kristiina, Marnila, Pertti, Alatossava, Tapani, and Korhonen, Hannu
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ENZYMATIC analysis , *MILKFAT , *COMPOSITION of milk , *LITERATURE reviews , *MILK proteins , *ESSENTIAL fatty acids - Abstract
Abstract: Bovine milk fat has one of the most complex compositions of all natural fats. It is composed of more than 400 different fatty acids, present primarily as triacylglycerols, which gives milk fat highly diverse functional and nutritional properties. The complexity of milk fat provides both opportunities and challenges for modifying its composition for different applications. Due to the versatility of lipid compounds, milk fat can be considered as a good source of essential fatty acids and fat-soluble vitamins. In addition, milk fat has physically and chemically favourable properties, and it also has good sensory quality. However, the negative nutritional image of milk fat, especially certain saturated long-chain fatty acids, and poor spreadability of butter have driven development of technologies to produce milk fat fractions with different physico-chemical or nutritional properties. This article reviews the current literature on enzymatic and physical means of fractionating bovine milk fat into different fractions, and highlights their fields of usage. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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21. Determination of Fusarium mycotoxins beauvericin and enniatins (A, A1, B, B1) in eggs of laying hens using liquid chromatography–tandem mass spectrometry (LC–MS/MS)
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Jestoi, Marika, Rokka, Mervi, Järvenpää, Eila, and Peltonen, Kimmo
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MYCOTOXINS , *EGGS , *FOOD toxicology , *FUSARIUM , *CHEMICAL sample preparation , *HENS , *LIQUID chromatography , *TANDEM mass spectrometry - Abstract
Abstract: An existing sample preparation technique used for the determination of ionophoric coccidiostats was modified to permit the analysis of Fusarium mycotoxins beauvericin and enniatins in egg samples. The validation results indicated that the sample preparation method developed is well applicable to the determination of the related compounds in eggs. The presence and contamination levels of beauvericin and enniatins A, A1, B and B1 were studied in Finnish egg samples in 2004–2005. The egg sample analyses (112 whole eggs and 367 egg yolk) revealed that the occurrence of beauvericin as well as enniatins B and B1 is very common in Finnish eggs. The contaminations were, however, in most cases in trace-levels (
- Published
- 2009
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22. Monitoring of the quality of modified atmosphere packaged broiler chicken cuts stored in different temperature conditions: B. Biogenic amines as quality-indicating metabolites
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Rokka, Mervi, Eerola, Susanna, Smolander, Maria, Alakomi, Hanna-Leena, and Ahvenainen, Raija
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TOTAL quality management , *QUALITY assurance , *STATISTICAL process control , *QUALITY circles - Abstract
The formation of biogenic amines was studied in broiler chicken cuts stored in modified atmosphere (MA) packages. Also, the applicability of biogenic amines for the quality control of MA-packaged broiler chicken cuts was evaluated in various constant and variable temperature schemes. It was found that temperature dependent changes took place in the concentrations of tyramine, putrescine and cadaverine. The changes in the concentrations of these amines were in accordance with the microbiological quality of broiler chicken cuts. On the basis of the results it was concluded that tyramine, putrescine and cadaverine could serve as quality indicating tools for MA-stored poultry. [Copyright &y& Elsevier]
- Published
- 2004
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23. The effect of a Camelina sativa enriched diet on the composition and sensory quality of hen eggs
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Rokka, T., Alén, K., Valaja, J., and Ryhänen, E.-L.
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EGGS as food , *CAMELLIAS - Abstract
Camelina sativa L. Crantz (CS) seed oil is rich in essential omega-3-fatty acids, which have been shown to have positive effects on human health. The present work was designed to study CS as a new dietary source of omega-3-fatty acids for the production of healthful eggs. The results indicate that the fatty acid composition of hen eggs can be beneficially modified by CS seed oil. The functional properties of eggs did not deteriorate. The sensory properties in CS oil eggs were better than in flaxseed oil eggs. [Copyright &y& Elsevier]
- Published
- 2002
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24. (S)-[18F]THK5117 brain uptake is associated with Aβ plaques and MAO-B enzyme in a mouse model of Alzheimer's disease.
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Alzghool, Obada M., Rokka, Johanna, López-Picón, Francisco R., Snellman, Anniina, Helin, Jatta S., Okamura, Nobuyuki, Solin, Olof, Rinne, Juha O., and Haaparanta-Solin, Merja
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LABORATORY mice , *NEUROFIBRILLARY tangles , *ALZHEIMER'S disease , *TAU proteins , *ANIMAL disease models , *POSITRON emission tomography , *ENZYMES - Abstract
The mouse model of beta-amyloid (Aβ) deposition, APP/PS1-21, exhibits high brain uptake of the tau-tracer (S)-[18F]THK5117, although no neurofibrillary tangles are present in this mouse model. For this reason we investigated (S)-[18F]THK5117 off-target binding to Aβ plaques and MAO-B enzyme in APP/PS1-21 transgenic (TG) mouse model of Aβ deposition. APP/PS1-21 TG and wild-type (WT) control mice in four different age groups (2–26 months) were imaged antemortem by positron emission tomography with (S)-[18F]THK5117, and then brain autoradiography. Additional animals were used for immunohistochemical staining and MAO-B enzyme blocking study with deprenyl pre-treatment. Regional standardized uptake value ratios for the cerebellum revealed a significant temporal increase in (S)-[18F]THK5117 uptake in aged TG, but not WT, brain. Immunohistochemical staining revealed a similar increase in Aβ plaques but not endogenous hyper-phosphorylated tau or MAO-B enzyme, and ex vivo autography showed that uptake of (S)-[18F]THK5117 co-localized with the amyloid pathology. Deprenyl hydrochloride pre-treatment reduced the binding of (S)-[18F]THK5117 in the neocortex, hippocampus, and thalamus. This study's findings suggest that increased (S)-[18F]THK5117 binding in aging APP/PS1-21 TG mice is mainly due to increasing Aβ deposition, and to a lesser extent binding to MAO-B enzyme, but not hyper-phosphorylated tau. • This study investigated (S)-[18F]THK5117 in vivo binding selectivity and pharmacokinetic properties in APP/PS1-21 mouse model. • No NFTs are present in APP/PS1-21 mouse brain, only some endogenous p-tau within the vicinity of Aβ plaques. • A clear temporal increase in (S)-[18F]THK5117 uptake was present in the brain of APP/PS1-21 mouse as they aged. • (S)-[18F]THK5117 binding in APP/PS1-21 mice is mainly due to increasing Aβ plaques, and to a lesser extent due to binding to MAO-B enzyme, but not p-tau. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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25. dyngraph2vec: Capturing network dynamics using dynamic graph representation learning.
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Goyal, Palash, Chhetri, Sujit Rokka, and Canedo, Arquimedes
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REPRESENTATIONS of graphs , *VECTOR spaces , *TIME-varying networks , *STOCHASTIC models - Abstract
Learning graph representations is a fundamental task aimed at capturing various properties of graphs in vector space. The most recent methods learn such representations for static networks. However, real-world networks evolve over time and have varying dynamics. Capturing such evolution is key to predicting the properties of unseen networks. To understand how the network dynamics affect the prediction performance, we propose an embedding approach which learns the structure of evolution in dynamic graphs and can predict unseen links with higher precision. Our model, dyngraph2vec , learns the temporal transitions in the network using a deep architecture composed of dense and recurrent layers. We motivate the need for capturing dynamics for the prediction on a toy dataset created using stochastic block models. We then demonstrate the efficacy of dyngraph2vec over existing state-of-the-art methods on two real-world datasets. We observe that learning dynamics can improve the quality of embedding and yield better performance in link prediction. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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26. Changes in cardiac proteome and metabolome following exposure to the PAHs retene and fluoranthene and their mixture in developing rainbow trout alevins.
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Eriksson, Andreas N.M., Rigaud, Cyril, Rokka, Anne, Skaugen, Morten, Lihavainen, Jenna H., and Vehniäinen, Eeva-Riikka
- Published
- 2022
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27. Screening of microbes for lipases specific for saturated medium and long-chain fatty acids of milk fat.
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Miettinen, Hanna, Nyyssölä, Antti, Rokka, Susanna, Kontkanen, Hanna, and Kruus, Kristiina
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LIPASES , *SATURATED fatty acids , *MILKFAT , *NITROPHENYL compounds , *OLIVE oil , *HYDROLYSIS - Abstract
Abstract: Over 250 microbial strains were screened for lipase activity specific towards saturated medium and long-chain fatty acids. Strains showing trimyristin (C14:0) hydrolysis on agar medium were further streaked on tricaprylin (C8:0) and on olive oil (mostly C18:1) agar to identify strains hydrolysing C12–C15 fatty acids with modest or no activity towards short-chain and unsaturated fatty acids. The twenty strains showing the desired specificity were grown as liquid cultures and analysed for p-nitrophenyl (p-NP) myristate hydrolysis in the presence of Triton X-100. Cells from the cultures showing the highest activity towards p-NP myristate were analysed for specificity towards p-NP esters of different fatty acid chain lengths. On the basis of the p-NP ester profiling, four lipase samples were selected for hydrolysis experiments on butter oil. Of these, the sample obtained from the cultivation of Didpodascus capitatus met the screening criteria: C12:0–C16:0 specificity and no preference towards C18:0 and C18:1 fatty acids. [Copyright &y& Elsevier]
- Published
- 2013
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28. [(11)C]PIB-, [(18)F]FDG-PET and MRI imaging in patients with Parkinson's disease with and without dementia.
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Jokinen P, Scheinin N, Aalto S, Någren K, Savisto N, Parkkola R, Rokka J, Haaparanta M, Röyttä M, Rinne JO, Jokinen, Pekka, Scheinin, Noora, Aalto, Sargo, Någren, Kjell, Savisto, Nina, Parkkola, Riitta, Rokka, Johanna, Haaparanta, Merja, Röyttä, Matias, and Rinne, Juha O
- Abstract
The objective of this study was to identify possible group differences between PD patients with dementia and without dementia by combining different functional and structural imaging methods in vivo, which might provide an opportunity to disentangle the pathophysiological correlates of cognitive impairment and dementia in PD. We performed a neuropsychological evaluation, structural brain MRI, [(18)F]FDG PET and [(11)C]PIB PET in 19 PD patients [eight non-demented (PD), eleven demented (PDD)] and 24 healthy elderly volunteers. [(11)C]PIB region-to-cerebellum ratios did not differ significantly between the groups in any brain region (p > 0.05). PDD patients showed impaired glucose metabolism in cortical brain regions and this reduction was associated with the degree of cognitive impairment. PDD patients had more atrophy both in the hippocampus and the frontal cortex compared with PD patients and controls, and hippocampal atrophy was associated with impaired memory. This cross-sectional data suggests that development of dementia in PD is associated with extensive spread of hypometabolism beyond the occipital cortex, and with hippocampal and frontal atrophy but not beta-amyloid deposition consistent with a unique biological process related to PD rather than co-incidental development of AD in persons with PD. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
29. Analysis of biogenic amines in northern and southern European sausages and role of flora in amine production
- Author
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Ansorena, D., Montel, M.C., Rokka, M., Talon, R., Eerola, S., Rizzo, A., Raemaekers, M., and Demeyer, D.
- Subjects
- *
SAUSAGES , *BIOGENIC amines , *FOOD safety - Abstract
The biogenic amine contents, microbial counts and flora producing amines were investigated in four types of fermented sausages. Southern type European sausages (Italian and Belgian) showed higher tyramine and phenylethylamine values than northern type ones (Norwegian and Belgian). The spontaneous non-starter lactic acid bacteria could be responsible for the production of these amines in the Italian products, and the cocci Gram positive in the Belgian South ones. The Norwegian sausages showed the lowest total amine content of those studied. The two Belgian types were characterised by the highest putrescine contents, associated with high counts of Enterococcus. The production of amines in vitro by the starter cultures used in the manufacture of the sausages revealed that none of the Lactobacillus species produced any amines and only Kocuria varians and Staphylococcus carnosus showed phenylethylamine and tryptamine production. High correlations were found between the content of putrescine, histamine and cadaverine. [Copyright &y& Elsevier]
- Published
- 2002
- Full Text
- View/download PDF
30. Transmitted drug resistance among HIV-1 drug-naïve patients in Greece.
- Author
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Kantzanou, Maria, Karalexi, Maria A., Papachristou, Helen, Vasilakis, Alexis, Rokka, Chrysoula, and Katsoulidou, Antigoni
- Subjects
- *
DRUG resistance , *HIV infections , *HIV , *POISSON regression , *HIV-positive persons - Abstract
• Transmitted drug resistance adversely affects antiretroviral therapy and clinical outcomes. • HIV-1 non-B subtypes seem to predominate in Greece. • The frequency of transmitted drug resistance mutations has remained stable over the years. • Close monitoring of resistance testing is needed to ensure the success of antiretroviral treatment. Despite the success of antiretroviral treatment (ART), the persisting transmitted drug resistance (TDR) and HIV genetic heterogeneity affect the efficacy of treatment. This study explored the prevalence of TDR among ART-naïve HIV patients in Greece during the period 2016–2019. Genotypic resistance testing was available for 438 ART-naïve HIV patients. Multivariable Poisson regression models were fitted. The majority of patients were male, and there was a slight predominance of Hellenic (26.5%) over non-Hellenic (21.9%) nationality. The prevalence of TDR was 7.8%. There was a predominance of mutations for non-nucleoside reverse-transcriptase inhibitors (5.7%) over nucleoside reverse-transcriptase inhibitors (0.2%). No mutations to protease inhibitors were detected. The prevalence of resistance was 22.1% based on all mutations identified through the HIVdb interpretation system. The most frequent resistance sites were E138A (9.6%), K103N (6.4%), and K101E (2.1%). The majority of detected mutations were confined to subtype A (52.6%), followed by B (19.6%). Non-Hellenic nationality was significantly associated with an increased risk of TDR (relative risk 1.32, 95% confidence interval 1.04–1.69). Non-B HIV infections predominate in Greece, with an increasing trend in recent years. The prevalence of TDR remains stable. Ongoing surveillance of resistance testing is needed to secure the long-term success of ART. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
31. Retene, pyrene and phenanthrene cause distinct molecular-level changes in the cardiac tissue of rainbow trout (Oncorhynchus mykiss) larvae, part 2 – Proteomics and metabolomics.
- Author
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Rigaud, Cyril, Eriksson, Andreas, Rokka, Anne, Skaugen, Morten, Lihavainen, Jenna, Keinänen, Markku, Lehtivuori, Heli, and Vehniäinen, Eeva-Riikka
- Abstract
Polycyclic aromatic hydrocarbons (PAHs) are global contaminants of concern. Despite several decades of research, their mechanisms of toxicity are not very well understood. Early life stages of fish are particularly sensitive with the developing cardiac tissue being a main target of PAHs toxicity. The mechanisms of cardiotoxicity of the three widespread model polycyclic aromatic hydrocarbons (PAHs) retene, pyrene and phenanthrene were explored in rainbow trout (Oncorhynchus mykiss) early life stages. Newly hatched larvae were exposed to sublethal doses of each individual PAH causing no detectable morphometric alterations. Changes in the cardiac proteome and metabolome were assessed after 7 or 14 days of exposure to each PAH. Phase I and II enzymes regulated by the aryl hydrocarbon receptor were significantly induced by all PAHs, with retene being the most potent compound. Retene significantly altered the level of several proteins involved in key cardiac functions such as muscle contraction, cellular tight junctions or calcium homeostasis. Those findings were quite consistent with previous reports regarding the effects of retene on the cardiac transcriptome. Significant changes in proteins linked to iron and heme metabolism were observed following exposure to pyrene. While phenanthrene also altered the levels of several proteins in the cardiac tissue, no clear mechanisms or pathways could be highlighted. Due to high variability between samples, very few significant changes were detected in the cardiac metabolome overall. Slight but significant changes were still observed for pyrene and phenanthrene, suggesting possible effects on several energetic or signaling pathways. This study shows that early exposure to different PAHs can alter the expression of key proteins involved in the cardiac function, which could potentially affect negatively the fitness of the larvae and later of the juvenile fish. Unlabelled Image • O. mykiss larvae were exposed to either retene, pyrene or phenanthrene. • Changes in the cardiac proteome and metabolome were measured after 7 and 14 days. • Each PAH caused unique changes in the cardiac proteome. • Retene altered the level of several proteins involved in key cardiac functions. • Proteins linked to metabolism and handling of iron and heme were altered by pyrene. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
32. P-083 - Antibody-based radioligands can distinguish between amyloid-beta subtypes beyond [11C]PiB-positive pathology.
- Author
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Syvaenen, Stina, de la Vega, Maria Pagnon, Meier, Silvio, Roshanbin, Sahar, Rokka, Johanna, Eriksson, Jonas, and Sehlin, Dag
- Subjects
- *
PATHOLOGY , *IMMUNOGLOBULINS - Published
- 2023
- Full Text
- View/download PDF
33. Effect of homogenised and pasteurised versus native cows' milk on gastrointestinal symptoms, intestinal pressure and postprandial lipid metabolism.
- Author
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Nuora, Anu, Tupasela, Tuomo, Tahvonen, Raija, Rokka, Susanna, Marnila, Pertti, Viitanen, Matti, Mäkelä, Petri, Pohjankukka, Jonne, Pahikkala, Tapio, Yang, Baoru, Kallio, Heikki, and Linderborg, Kaisa
- Subjects
- *
PASTEURIZATION of milk , *LIPID metabolism , *GASTROINTESTINAL diseases , *MILK allergy , *LIPEMIA - Abstract
Some people experience gastrointestinal symptoms related to cow’s milk consumption even if neither lactose intolerance nor cow’s milk allergy can be diagnosed. To investigate whether milk homogenization could cause gastrointestinal problems, homogenized and pasteurized milk and native milk were served to eleven volunteers who reported such sensitivity in a random order together with an ingestible pressure measuring capsule. Postprandial lipemia did not differ between the two milk types, but significant differences were found in the postprandial plasma fatty acid composition. No significant difference was found in the amount of gastrointestinal symptoms or in the intestinal pressure after the consumption of native and processed milk. However, the obtained results on pressure in the large intestine ( P = 0.068) as well as reported symptoms ( P = 0.103) suggest that further studies in this area are needed with a bigger subject group and with longer exposure times to differently processed milk types. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
34. Keratinocyte Microvesicles Regulate the Expression of Multiple Genes in Dermal Fibroblasts.
- Author
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Huang, Ping, Bi, Jiarui, Owen, Gethin R, Chen, Weimin, Rokka, Anne, Koivisto, Leeni, Heino, Jyrki, Häkkinen, Lari, and Larjava, Hannu
- Subjects
- *
KERATINOCYTES , *GENE expression , *FIBROBLASTS , *WOUND healing , *METALLOPROTEINASES , *INTERLEUKIN-6 , *INTERLEUKIN-8 - Abstract
Extracellular vesicles released from cells regulate many normal and pathological conditions. Little is known about the role of epidermal keratinocyte microvesicles (KC-MVs) in epithelial-stromal interaction that is essential for wound healing. We investigated, therefore, whether MV-like structures are present in human wounds and whether they affect wound healing-associated gene expression in dermal fibroblasts. In human wounds, MV-like vesicles were observed during active epithelial migration and early granulation tissue formation. When KC-MVs derived from keratinocyte-like cells (HaCaT) were added to fibroblast cultures, expression of 21 genes was significantly regulated (P<0.05) out of 80 genes investigated, including matrix metalloproteinase-1 and -3, interleukin-6 and -8, and genes associated with transforming growth factor-β signaling. Similar changes were observed at the protein level. MVs from normal epidermal keratinocytes showed similar response to HaCaT cells. KC-MVs activated ERK1/2, JNK, Smad, and p38 signaling pathways in fibroblasts with ERK1/2 signaling having the most prominent role in the MV-induced gene expression changes. KC-MVs stimulated fibroblast migration and induced fibroblast-mediated endothelial tube formation but did not affect collagen gel contraction by fibroblasts. The results demonstrate that keratinocyte microvesicles have a strong and a specific regulatory effect on fibroblasts that may modulate several aspects of wound healing. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
35. Treatment of milk fat with sn-2 specific Pseudozyma antarctica lipase A for targeted hydrolysis of saturated medium and long-chain fatty acids.
- Author
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Nyyssölä, Antti, Miettinen, Hanna, Kontkanen, Hanna, Lille, Martina, Partanen, Riitta, Rokka, Susanna, Järvenpää, Eila, Lantto, Raija, and Kruus, Kristiina
- Subjects
- *
MILKFAT , *HYDROLYSIS , *COMPOSITION of milk , *RIBONUCLEASES , *FATTY acid content of milk , *BIOCHEMICAL substrates - Abstract
Milk fat was treated with the sn- 2 specific PAN-2 lipase from Pseudozyma antarctica with the aim of achieving selective removal of saturated fatty acids with chain lengths between C12 and C16, which are abundant at the sn- 2 position. Hydrolysis was also carried out using the non-specific CRU-NS from Candida rugosa and the 1,3-specific TLA-1,3 from Thermomyces lanuginosus . PAN-2 treatment decreased the proportion of the target fatty acids considerably (content of 28%, w/w) and increased the proportion of unsaturated ones (content of 52%, w/w) at the degree of hydrolysis of 48% (mol/mol) in relation to the unhydrolysed substrate (47%, w/w, C12:0-C14:0 and 32%, w/w, unsaturated). The fatty acid distributions of the TLA-1,3 and CRU-NS treated samples were similar to untreated milk fat. The proportion of crystalline fat was smaller and the firmness lower in the PAN-2 treated milk fat samples than in the untreated milk fat at 5 °C. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
36. [11C]PIB-, [18F]FDG-PET and MRI imaging in patients with Parkinson’s disease with and without dementia
- Author
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Jokinen, Pekka, Scheinin, Noora, Aalto, Sargo, Någren, Kjell, Savisto, Nina, Parkkola, Riitta, Rokka, Johanna, Haaparanta, Merja, Röyttä, Matias, and Rinne, Juha O.
- Subjects
- *
PARKINSON'S disease , *DEMENTIA patients , *NEUROPSYCHOLOGICAL tests , *HIPPOCAMPUS (Brain) , *METABOLISM , *PATHOLOGICAL physiology , *COGNITION disorders , *MAGNETIC resonance imaging - Abstract
Abstract: The objective of this study was to identify possible group differences between PD patients with dementia and without dementia by combining different functional and structural imaging methods in vivo, which might provide an opportunity to disentangle the pathophysiological correlates of cognitive impairment and dementia in PD. We performed a neuropsychological evaluation, structural brain MRI, [18F]FDG PET and [11C]PIB PET in 19 PD patients [eight non-demented (PD), eleven demented (PDD)] and 24 healthy elderly volunteers. [11C]PIB region-to-cerebellum ratios did not differ significantly between the groups in any brain region (p > 0.05). PDD patients showed impaired glucose metabolism in cortical brain regions and this reduction was associated with the degree of cognitive impairment. PDD patients had more atrophy both in the hippocampus and the frontal cortex compared with PD patients and controls, and hippocampal atrophy was associated with impaired memory. This cross-sectional data suggests that development of dementia in PD is associated with extensive spread of hypometabolism beyond the occipital cortex, and with hippocampal and frontal atrophy but not beta-amyloid deposition consistent with a unique biological process related to PD rather than co-incidental development of AD in persons with PD. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
37. Comparison of different analytical methods in the monitoring of the quality of modified atmosphere packaged broiler chicken cuts using principal component analysis
- Author
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Vainionpää, Jukka, Smolander, Maria, Alakomi, Hanna-Leena, Ritvanen, Tiina, Rajamäki, Tiina, Rokka, Mervi, and Ahvenainen, Raija
- Subjects
- *
CHICKENS , *FROZEN chicken , *FOOD preservation , *TEMPERATURE measurements , *MICROBIOLOGICAL chemistry , *METABOLITES - Abstract
The quality changes of modified atmosphere packaged broiler chicken cuts during cold storage were monitored using four different method groups: time–temperature indicators (TTIs), microbiological analyses, quality indicating metabolites and sensory evaluation. The comparison of the sensitivities of the quality indicating method groups was performed using principal component analysis (PCA). According to PCA, the microbiological analyses and the TTIs give the same result and are more critical than either the quality indicating metabolites or sensory evaluations. The group consisting of a wide variety of quality indicating metabolites was least critical. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
38. Assessment of physiological age and antioxidant status of new somatic hybrid potato seeds during extended cold storage.
- Author
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Kammoun, Mariem, Essid, Mohamed Farouk, Ksouri, Fakhry, Rokka, Veli-Matti, Charfeddine, Mariam, Gargouri-Bouzid, Radhia, and Nouri-Ellouz, Oumèma
- Subjects
- *
AGE , *SOMATIC hybrids , *OXIDANT status , *COLD storage , *POTATO seeds , *DORMANCY in plants , *TUBERS - Abstract
• Hybrid lines seem less sensitive to aging than Spunta variety during cold storage. • Off-seasonal culture conditions affect negatively the physiology of Spunta tubers. • Combination of sprouting and emergence parameters seems more efficient in aging study. • Biochemical parameters seem more sensitive to aging than physiological parameters. • Hybrids display higher agronomic performances than Spunta in terms of the production. Yield components of potato are largely affected by the physiology age of the tuber seeds at planting. The current study focuses on monitoring seed tuber aging in two CN1 and CN2 somatic hybrid lines and Spunta (Sp) variety during 270 days of storage at 4 °C. Aging rate was monitored based on sprouting, emergence and tissue oxidation rates. Investigation of sprouting parameters such as physiological age index (PAI) considering physiological and chronological age and the incubation period (IP) indicated lower physiological age in hybrids than in Sp during the storage. Moreover, these analyses showed that off-seasonal growing conditions increased the aging, more clearly, in Sp tubers than in hybrid ones. However, dormancy periods (endodormancy and after storage dormancy) were equivalent in the different tuber lots. PAI and IP data when combined with those from emergence parameters (duration until emergence and stem number) seem more efficient for the characterization of the different potato lines. However, emergence indicators, when considered separately, were not able to distinguish clearly between seasonal and off-seasonal tubers. Data suggest that hybrid seeds exhibited high performances since they produced higher stem number per plant than Sp. The high aging rate in Sp tubers seems to be associated with the few developed stems. Biochemical analyses supported in part morphophysiological differences between hybrids and Sp seeds although these indicators seem more sensitive to aging. Indeed data showed that the dormancy break, and then, the development were associated with some level of tissue oxidation. Antioxidants such as superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPX) and carotenoids seem more enhanced after the release of dormancy. However, induction of these activities started earlier in off-seasonal tubers than in seasonal ones, this was consistent with their advanced aging level revealed by PAI and IP data. Activation of these antioxidants appears to respond effectively to the increase of ROS suggesting a better control of postharvest development and tissue deterioration especially in CN2 off-seasonal tubers. This study suggests that CN2 followed by CN1 exhibited the best performance compared to Sp variety. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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