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Additional file 12: Table S10. Parameter estimates for the significant RNA models. For each of the phenotypes, the model outputs the estimated values for the 10 genes obtained from the GRM regression analysis. The lower the value of Pr >|t|, the higher the involvement of the gene abundance on the total phenotypic variance.

Additional file 2: Figure S2. Correlation across boar sperm quality traits. Heatmap plot of the correlations among the 25 sperm traits measured on 300 boars. CON = concentration; VIAB_5 = viability 5 min; VIAB_90 = viability 90 min; ORT = osmotic resistance test; HABN = head abnormalities; NABN = neck abnormalities; TABN = tail abnormalities; PDROP = proximal droplets; DDROP = distal droplets; MT_5 = motility 5 min; VAP_5 = average path velocity 5 min; VCL_5 = curvilinear velocity 5 min; VSL_5 = straight line velocity 5 min; MT_90 = motility 90 min; VAP_90 = average path velocity 90 min; VCL_90 = curvilinear velocity 90 min; VSL_90 = straight line velocity 90 min; ACRO_5 = abnormal acrosomes 5 min; ACRO_90 = abnormal acrosomes 90 min; R_MT = ratio motility; R_VAP = ratio average path velocity; R_VCL = ratio curvilinear velocity; R_VSL = ratio straight line velocity; R_VIAB = ratio viability; R_ACRO = ratio acrosomes. Figure S3. SNP based dendrogram for the 25 semen parameters. Dendrogram of the standardized SNP effects across the 25 sperm traits.