30 results on '"Michael F, Berger"'
Search Results
2. MP41-20 DEFINING THE UTILITY OF MSK-ACCESS, A CELL-FREE TUMOR DNA ASSAY, IN PATIENTS TREATED WITH RADICAL CYSTECTOMY FOR MUSCLE-INVASIVE BLADDER CANCER
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Peter Reisz, Michael F. Berger, Ronak Shah, Eugene J. Pietzak, Bernard H. Bochner, Nicholas Silva, Gopa Iyer, Priscilla Baez, Timothy Clinton, Manuel R. de Jesus Escano, Charles Murphy, Timothy R. Donahue, Aditya Bagrodia, Hong Truong, David B. Solit, Christine A. Iacobuzio-Donahue, and Andrew T. Lenis
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medicine.medical_specialty ,Bladder cancer ,business.industry ,Urology ,medicine.medical_treatment ,Muscle invasive ,Cell free ,medicine.disease ,Cystectomy ,chemistry.chemical_compound ,chemistry ,medicine ,In patient ,business ,DNA - Published
- 2021
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3. PD47-02 'ACTIONABLE' GENOMIC ALTERATIONS IN CHEMOTHERAPY RESISTANT MUSCLE-INVASIVE BLADDER CANCER
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Nikolaus Schultz, Samuel Funt, Gopa Iyer, Leon Telis, Jonathan E. Rosenberg, Nima Almassi, Michael F. Berger, Hikmat Al-Ahmadie, Min Yuen Teo, Timothy R. Donahue, Dean F. Bajorin, Eugene J. Pietzak, Guido Dalbagni, David B. Solit, Timothy Clinton, and Bernard H. Bochner
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Oncology ,Cisplatin ,medicine.medical_specialty ,Chemotherapy ,Standard of care ,Bladder cancer ,business.industry ,Urology ,medicine.medical_treatment ,Muscle invasive ,medicine.disease ,Cystectomy ,Internal medicine ,medicine ,Chemotherapy resistant ,business ,medicine.drug - Abstract
INTRODUCTION AND OBJECTIVE:The standard of care for muscle invasive bladder cancer (MIBC) is cisplatin-based neoadjuvant chemotherapy (NAC) followed by radical cystectomy. Patients with residual MI...
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- 2020
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4. PD18-09 GENOMIC BIOMARKERS FOR IMMUNE-CHECKPOINT BLOCKADE RESPONSE IN METASTATIC UPPER TRACT UROTHELIAL CARCINOMA
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Eugene J. Pietzak, Eduard Reznik, Timothy A. Chan, Renzo G. DiNatale, Andrew W. Silagy, David B. Solit, Vlad Makarov, A. Ari Hakimi, Diego Chowell, Michael F. Berger, Jonathan A. Coleman, and Dean F. Bajorin
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Cisplatin ,Adjuvant chemotherapy ,business.industry ,Urology ,Treatment options ,Immune checkpoint ,Genomic biomarkers ,Blockade ,Upper tract ,Cancer research ,Medicine ,business ,Urothelial carcinoma ,medicine.drug - Abstract
INTRODUCTION AND OBJECTIVE:Patients with metastatic upper tract urothelial carcinoma (UTUC) have limited treatment options: cisplatin-based adjuvant chemotherapy has been shown to provide a surviva...
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- 2020
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5. PD12-12 PATIENT MATCHED GENOMIC ANALYSIS OF HIGH-GRADE NON-MUSCLE INVASIVE BLADDER CANCER SPECIMENS PRE- AND POST-BCG IMMUNOTHERAPY
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Hikmat Al-Ahmadie, Jessica A. Lavery, Michal Wiseman, Guido Dalbagni, Bernard H. Bochner, Nikolaus Schultz, Michael F. Berger, Gopa Iyer, Aditya Bagrodia, Aleksandra Walasek, Eugene J. Pietzak, Nima Almassi, David B. Solit, Victor McPherson, Shweta S. Chavan, Irina Osyrovnaya, Shawn Dason, and Timothy Clinton
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medicine.medical_specialty ,Bladder cancer ,business.industry ,Urology ,medicine.medical_treatment ,Bcg immunotherapy ,Immunotherapy ,medicine.disease ,medicine ,Intravesical bcg ,Non muscle invasive ,business ,Pre and post - Abstract
INTRODUCTION AND OBJECTIVE:High-grade non-muscle invasive bladder cancer (NMIBC) is treated with intravesical BCG immunotherapy. Unfortunately, 40% of patients develop recurrence with a subset prog...
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- 2020
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6. PD12-09 INHERITED CANCER PREDISPOSITION GENE VARIANTS IN PATIENTS WITH NON-MUSCLE INVASIVE BLADDER CANCER
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Karen Cadoo, Bernard H. Bochner, Chai Bandlamudi, Michal Wiseman, Barry S. Taylor, Mark E. Robson, Gopa Iyer, Jonathan E. Rosenberg, Kenneth Offit, Aliya Khurram, Nima Almassi, Hikmat Al-Ahmadie, Liying Zhang, Michael Walsh, Aleksandra Walasek, Maria I. Carlo, Aditya Bagrodia, Michael F. Berger, Dean F. Bajorin, Zsofia K. Stadler, Vijai Joseph, Preethi Srinivasan, Diana Mandelker, Guido Dalbagni, David B. Solit, Yelena Kemel, Eugene J. Pietzak, Eugene K. Cha, and Timothy Clinton
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Bladder cancer ,business.industry ,Cancer predisposition ,Urology ,Locally advanced ,medicine.disease ,Germline ,Cancer research ,Urothelial cancer ,Medicine ,In patient ,Non muscle invasive ,business ,Gene - Abstract
INTRODUCTION AND OBJECTIVE:Emerging data have shown that patients with locally advanced and metastatic urothelial cancer frequently harbor rare germline variants in cancer predisposition genes, par...
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- 2020
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7. MP43-05 THE LANDSCAPE OF CLINICALLY ACTIONABLE GENOMIC ALTERATIONS IN PATIENTS WITH BACILLE CALMETTE-GUERIN (BCG) UNRESPONSIVE BLADDER CANCER: TOWARDS TARGETED THERAPY IN NON-MUSCLE INVASIVE BLADDER CANCER
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Gopakumar Iyer, Shawn Dason, Nima Almassi, Eugene J. Pietzak, Jonathan E. Rosenberg, Tanya Klein, Nikolaus Schultz, David B. Solit, Hikmat Al-Ahmadie, Michael F. Berger, Nicole Benfante, Aleksandra Walasek, Dean F. Bajorin, Bernard H. Bochner, Victor McPherson, and Guido Dalbagni
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Oncology ,medicine.medical_specialty ,Bladder cancer ,business.industry ,Urology ,medicine.medical_treatment ,Bacille Calmette Guerin ,medicine.disease ,Targeted therapy ,Internal medicine ,Medicine ,In patient ,business ,Non muscle invasive - Published
- 2019
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8. Intracardiac Low-grade Sarcoma Following Treatment for Ewing Sarcoma
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Meera Hameed, Emily K. Slotkin, Leonard H. Wexler, Alexander J. Chou, Anita P. Price, Paul A. Meyers, Alex Kentsis, Heather Magnan, Ahmet Zehir, Jennifer Kennedy, Michael V. Ortiz, Suzanne L. Wolden, Todd E. Heaton, Srikanth R. Ambati, Neerav Shukla, Michael F. Berger, Leonard N. Girardi, and Michael Walsh
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Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Adolescent ,Somatic cell ,Biopsy ,Sarcoma, Ewing ,Article ,Intracardiac injection ,Heart Neoplasms ,03 medical and health sciences ,0302 clinical medicine ,Germline mutation ,Antineoplastic Combined Chemotherapy Protocols ,Recurrent Ewing Sarcoma ,Humans ,Medicine ,Digital polymerase chain reaction ,medicine.diagnostic_test ,business.industry ,RNA-Binding Proteins ,Neoplasms, Second Primary ,Sarcoma ,Hematology ,medicine.disease ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Mutation ,Pediatrics, Perinatology and Child Health ,Calmodulin-Binding Proteins ,Spindle cell sarcoma ,RNA-Binding Protein EWS ,Tomography, X-Ray Computed ,business - Abstract
A 16-year-old male was diagnosed with Ewing sarcoma of the ribcage with pulmonary metastases. Six months after completion of scheduled therapy, he was found to have a new intracardiac mass, presumed recurrent Ewing sarcoma. EWSR1 fusion was not detected by droplet digital polymerase chain reaction from blood plasma. After no improvement with salvage chemotherapy, he underwent surgical resection that identified a low-grade spindle cell sarcoma. Despite the near-synchronous presentation of 2 unrelated sarcomas, extensive genomic analyses did not reveal any unifying somatic or germline mutations nor any apparent cancer predisposition. This case also highlights the potential role of utilizing plasma cell-free DNA for diagnosing tumors in locations where biopsy confers high morbidity.
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- 2017
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9. MP54-04 NEXT GENERATION SEQUENCING OF UROTHELIAL BLADDER CANCER: MEMORIAL SLOAN KETTERING CANCER CENTER EXPERIENCE IN 454 PATIENTS
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Samuel Funt, Guido Dalbagni, Maria E. Arcila, David B. Solit, Min Yuen Teo, Eugene J. Pietzak, Michael F. Berger, Timothy R. Donahue, Sumit Isharwal, Dean F. Bajorin, Irina Ostrovnaya, Eugene K. Cha, Bernard H. Bochner, Esther Drill, François Audenet, Hikmat Al-Ahmadie, Gopa Iyer, and Jonathan E. Rosenberg
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Oncology ,medicine.medical_specialty ,Bladder cancer ,business.industry ,Urology ,Internal medicine ,Medicine ,Cancer ,Center (algebra and category theory) ,business ,medicine.disease ,DNA sequencing - Published
- 2018
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10. MP65-15 COMPARISON OF GENOMIC ALTERATIONS IN BLADDER UROTHELIAL TUMORS WITH AND WITHOUT TELOMERASE REVERSE TRANSCRIPTASE PROMOTER MUTATION USING A NEXT-GENERATION SEQUENCING ASSAY
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David B. Solit, Bernard H. Bochner, Ahmet Zehir, Victor E. Reuter, Sumit Isharwal, Gopakumar Iyer, Barry S. Taylor, Dean F. Bajorin, Jonathan E. Rosenberg, Hikmat Al-Ahmadie, Guido Dalbagni, Eugene J. Pietzak, Satish K. Tickoo, François Audenet, Michael F. Berger, and Eugene K. Cha
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Promoter mutation ,business.industry ,Urology ,Cancer research ,Medicine ,Telomerase reverse transcriptase ,business ,Molecular biology ,DNA sequencing - Published
- 2017
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11. MP58-02 GENOMIC DIFFERENCES BETWEEN 'PRIMARY' AND 'SECONDARY' MUSCLE INVASIVE BLADDER CANCER: IMPLICATIONS FOR NEOADJUVANT CHEMOTHERAPY
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Michael F. Berger, Maria E. Arcila, Gopa Iyer, Bernard H. Bochner, Jonathan E. Rosenberg, Aditya Bagrodia, Priscilla Baez, Hikmat Al-Ahmadie, François Audenet, David B. Solit, Eugene J. Pietzak, Qiang Li, Ahmet Zehir, Eugene K. Cha, Nikolaus Schultz, Samuel Funt, David Barron, Harry W. Herr, Dean F. Bajorin, and Emily C. Zabor
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Oncology ,medicine.medical_specialty ,Chemotherapy ,Bladder cancer ,business.industry ,Urology ,Internal medicine ,medicine.medical_treatment ,Muscle invasive ,Medicine ,business ,medicine.disease - Published
- 2017
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12. MP48-17 PHENOTYPIC-GENOTYPIC CORRELATION OF TP53 AND RB1 IN UROTHELIAL CARCINOMA
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Bernard H. Bochner, Timothy R. Donahue, Gopa Iyer, Emmet Jordan, Machele Donat, Michael F. Berger, Byron K. Lee, Xiaoyong Zheng, Harry W. Herr, Hikmat Al-Ahmadie, François Audenet, David B. Solit, Guido Dalbagni, Eugene K. Cha, and Sumit Isharwal
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Correlation ,business.industry ,Urology ,Genotype ,Cancer research ,Medicine ,business ,Phenotype ,Urothelial carcinoma - Published
- 2017
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13. MP48-16 TARGETING ERBB2 MUTATIONS IN UROTHELIAL CARCINOMA
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Michael F. Berger, Eugene K. Cha, Maria E. Arcila, Gopa Iyer, François Audenet, Guido Dalbagni, Jonathan E. Rosenberg, Bernard H. Bochner, Sumit Isharwal, Samuel Funt, Hikmat Al-Ahmadie, David B. Solit, Timothy R. Donahue, Machele Donat, Harry W. Herr, and Dean F. Bajorin
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Oncology ,medicine.medical_specialty ,business.industry ,Urology ,Internal medicine ,medicine ,business ,Urothelial carcinoma - Published
- 2017
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14. Basal Cell Carcinosarcoma With PTCH1 Mutations in Both Epithelial and Sarcomatoid Primary Tumor Components and in the Sarcomatoid Metastasis
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Gregory McDermott, Klaus J. Busam, Daniel C. Coit, Maija Ht Kiuru, and Michael F. Berger
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Male ,Patched Receptors ,Oncology ,medicine.medical_specialty ,Pathology ,Skin Neoplasms ,Biopsy ,DNA Mutational Analysis ,Mutation, Missense ,Receptors, Cell Surface ,Pathology and Forensic Medicine ,Metastasis ,Fatal Outcome ,Carcinosarcoma ,Internal medicine ,Biomarkers, Tumor ,medicine ,Carcinoma ,Humans ,Genetic Predisposition to Disease ,Basal cell carcinoma ,Aged ,medicine.diagnostic_test ,business.industry ,High-Throughput Nucleotide Sequencing ,medicine.disease ,Immunohistochemistry ,Primary tumor ,Patched-1 Receptor ,Phenotype ,PTCH1 ,Carcinoma, Basal Cell ,Disease Progression ,Surgery ,Sarcoma ,Anatomy ,business - Abstract
Basal cell carcinosarcoma is a rare biphenotypic malignant skin tumor, in which one tumor component has light microscopic features of basal cell carcinoma, whereas the other has features of sarcoma. Clinical experience with this tumor is limited, and associated molecular genetic alterations are unknown. Herein, we report a unique case of metastatic basal cell carcinosarcoma, in which we analyzed the 2 components of the primary tumor as well as the metastasis by next-generation sequencing. The patient was a 72-year-old man who presented with a 7-year history of a large tumor of the left forearm. The tumor showed mixed features of basal cell carcinoma and undifferentiated sarcoma. The patient underwent a wide local excision and sentinel lymph node biopsy, which revealed microscopic subcapsular deposits of metastatic sarcomatoid tumor. One year later, intra-abdominal metastatic tumor was detected and resected. It had sarcomatoid features by light microscopy and failed to stain for epithelial markers by immunohistochemistry. DNA was extracted separately from the epithelial and sarcomatoid component of the primary tumor, intra-abdominal metastasis, and normal tissue. All exons of 230 cancer-associated genes were sequenced to an average read depth of >500-fold. This revealed multiple identical mutations in epithelial and sarcomatoid tumor compartments. Both compartments harbored 2 identical mutations, a truncating and a missense mutation, in the patched gene (PTCH1). This finding is not only of interest for a shared heritage of different subpopulations in a biphenotypic tumor, but also relevant clinically. It provides a rationale for the clinical use of hedgehog pathway inhibitors for treatment of patients affected by this tumor. Unfortunately, the patient reported herein died of metastatic disease before targeted therapy could be initiated.
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- 2014
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15. PD34-04 ACTIONABLE TARGETS IN PATIENTS WITH CISPLATIN-RESISTANT ADVANCED GERM CELL TUMORS
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Darren R. Feldman, Samuel D. Kaffenberger, Michael F. Berger, Emily C. Zabor, Jana Eng, Byron K. Lee, William H. Lee, John P. Sfakianos, Paul S. Gao, David B. Solit, Aditya Bagrodia, Hikmat Al-Ahmadie, Dean F. Bajorin, Joel Sheinfeld, Eugene K. Cha, George J. Bosl, Nikolaus Schultz, and Irina Ostrovnaya
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Serum testosterone ,medicine.medical_specialty ,business.industry ,Urology ,medicine ,Cisplatin resistant ,Testosterone (patch) ,In patient ,Germ cell tumors ,Testis cancer ,medicine.disease ,business - Abstract
(5.4% of all TC cases). In terms of ART 225 men (8.5%) with TC were prescribed testosterone. The OR of receiving a prescription was 4.5 95% CI [4.2,5.5] times higher than in men without TC and disproportionately high in younger men, with an 8.1 fold increase in the third decade of life. CONCLUSIONS: Men with a diagnosis of TC are four times more likely to have a serum testosterone checked, be diagnosed with hypogonadism, and receive ART. Serum testosterone is measured and more frequently found to be low in elderly patients with a history of TC compared to age-matched controls. Additionally, hypogonadism often predates the diagnosis of testis cancer. Finally, despite higher detection in elderly patients, ART is prescribed more often to young men with TC.
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- 2016
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16. MP88-13 MUTATIONAL LANDSCAPE OF PRIMARY BLADDER AND URACHAL ADENOCARCINOMA
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Helen Won, Michael F. Berger, Aditya Bagrodia, Neil Desai, Dean F. Bajorin, Byron K. Lee, Gopa Iyer, Bernard H. Bochner, Jonathan E. Rosenberg, Wonkyu Kim, Hikmat Al-Ahmadie, David B. Solit, and Emmet Jordan
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0301 basic medicine ,Oncology ,03 medical and health sciences ,medicine.medical_specialty ,030104 developmental biology ,0302 clinical medicine ,business.industry ,030220 oncology & carcinogenesis ,Urology ,Internal medicine ,Medicine ,business ,Urachal adenocarcinoma - Published
- 2016
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17. MP81-15 GENETIC BASIS FOR CISPLATIN RESISTANCE IN PATIENTS WITH ADVANCED GERM CELL TUMORS (GCT)
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John P. Sfakianos, Jana Eng, Samuel D. Kaffenberger, Hikmat Al-Ahmadie, Irina Ostrovnaya, Aditya Bagrodia, Dean F. Bajorin, George J. Bosl, Emily C. Zabor, Paul S. Gao, Darren R. Feldman, Michael F. Berger, Joel Sheinfeld, William Lee, Nikolaus Schultz, David B. Solit, Eugene K. Cha, and Byron K. Lee
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Oncology ,medicine.medical_specialty ,business.industry ,Cisplatin resistance ,Urology ,Internal medicine ,medicine ,In patient ,Germ cell tumors ,business ,medicine.disease - Published
- 2016
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18. Re: Inherited DNA-Repair Gene Mutations in Men with Metastatic Prostate Cancer
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Maha Hussain, Eliezer M. Van Allen, Jake Vinson, Arul M. Chinnaiyan, Dan R. Robinson, Bruce Montgomery, Joseph Vijai, Charles L. Sawyers, David B. Solit, Peter S. Nelson, Mark A. Rubin, Julie Filipenko, Rosalind A. Eeles, Tom Walsh, Silvia Casadei, Nikolaus Schultz, Colin C. Pritchard, Navonil De Sarkar, Robert J. Lonigro, Wassim Abida, Saud H. AlDubayan, Liying Zhang, Mary-Ellen Taplin, G. Celine Han, Philip W. Kantoff, Himisha Beltran, Heather H. Cheng, Howard I. Scher, Ahmet Zehir, Mallory Beightol, Colm Morrissey, Andrea Garofalo, Belinda Nghiem, Mark E. Robson, Roman Gulati, Joaquin Mateo, Levi A. Garraway, Michael F. Berger, Suzanne Carreira, Michael Walsh, Olivier Elemento, Kenneth Offit, and Johann S. de Bono
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0301 basic medicine ,Male ,Oncology ,Pathology ,medicine.medical_specialty ,DNA Repair ,DNA repair ,Urology ,DNA Mutational Analysis ,030232 urology & nephrology ,Gene mutation ,Germline ,Article ,03 medical and health sciences ,Prostate cancer ,Germline mutation ,0302 clinical medicine ,Text mining ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,Family history ,Neoplasm Metastasis ,CHEK2 ,Germ-Line Mutation ,Aged ,Aged, 80 and over ,business.industry ,Incidence ,Age Factors ,Cancer ,Prostatic Neoplasms ,General Medicine ,DNA ,Middle Aged ,medicine.disease ,030104 developmental biology ,030220 oncology & carcinogenesis ,Mutation ,Cancer research ,business - Abstract
Inherited mutations in DNA-repair genes such as BRCA2 are associated with increased risks of lethal prostate cancer. Although the prevalence of germline mutations in DNA-repair genes among men with localized prostate cancer who are unselected for family predisposition is insufficient to warrant routine testing, the frequency of such mutations in patients with metastatic prostate cancer has not been established.We recruited 692 men with documented metastatic prostate cancer who were unselected for family history of cancer or age at diagnosis. We isolated germline DNA and used multiplex sequencing assays to assess mutations in 20 DNA-repair genes associated with autosomal dominant cancer-predisposition syndromes.A total of 84 germline DNA-repair gene mutations that were presumed to be deleterious were identified in 82 men (11.8%); mutations were found in 16 genes, including BRCA2 (37 men [5.3%]), ATM (11 [1.6%]), CHEK2 (10 [1.9% of 534 men with data]), BRCA1 (6 [0.9%]), RAD51D (3 [0.4%]), and PALB2 (3 [0.4%]). Mutation frequencies did not differ according to whether a family history of prostate cancer was present or according to age at diagnosis. Overall, the frequency of germline mutations in DNA-repair genes among men with metastatic prostate cancer significantly exceeded the prevalence of 4.6% among 499 men with localized prostate cancer (P0.001), including men with high-risk disease, and the prevalence of 2.7% in the Exome Aggregation Consortium, which includes 53,105 persons without a known cancer diagnosis (P0.001).In our multicenter study, the incidence of germline mutations in genes mediating DNA-repair processes among men with metastatic prostate cancer was 11.8%, which was significantly higher than the incidence among men with localized prostate cancer. The frequencies of germline mutations in DNA-repair genes among men with metastatic disease did not differ significantly according to age at diagnosis or family history of prostate cancer. (Funded by Stand Up To Cancer and others.).
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- 2017
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19. MP36-12 CLONALITY OF BLADDER TUMORS FOLLOWING RADICAL NEPHROURETERECTOMY – AGAINST THE FIELD DEFECT HYPOTHESIS
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Michael F. Berger, Eugene K. Cha, John P. Sfakianos, Bernard H. Bochner, Neil Desai, Dean F. Bajorin, Aditya Bagrodia, Sasinya N. Scott, Gopa Iyer, Paari Murugan, David B. Solit, Ronak Shah, Jonathan E. Rosenberg, Jonathan A. Coleman, and Hikmat Al-Ahmadie
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Bladder cancer ,medicine.diagnostic_test ,business.industry ,Urology ,Autophagy ,Cell ,medicine.disease ,Flow cytometry ,medicine.anatomical_structure ,Apoptosis ,Lysosome ,Cancer cell ,medicine ,Cancer research ,Viability assay ,business - Abstract
INTRODUCTION AND OBJECTIVES: Macroautophagy, also known as type II programmed cell death, is a regulated catabolic pathway to degrade cellular organelles and macromolecules. The role of autophagy in cancer is complex and may differ depending on tumor type or context. Here, we investigated the activated basal autophagy in bladder cancer cells and its roles in maintaining cancer cell growth. METHODS: Human immortalized uroepithelium (SV-Huc-1) and bladder cancer cells including RT-4 (grade I), 5637 (grade II), HT1376 and T24 (grade III) were used. We also included human prostate cancer cells (Rv1 and PC3), breast cancer cell (MCF-7) and embryonic kidney cancer cell (293T) as reference cells. The cell viability was accessed by WST-8. Autophagy was detected by the expression level of LC3-II protein. Human bladder tumor tissue array (TMA; 12 cases, paired with normal tissue) was used to detect the LC3 expression level. Detection of apoptosis level was measured by caspase 3/7 activation, caspase 3 cleavage and TUNEL assays. The ROS generation, mitochondria membrane potential in cells treated with autophagy inhibitors was assayed by staining with H2DCFCA and JC-1 dyes, respectively, and subsequently subjected to flow cytometry analysis. Disruption of lysomome membrane (LMP) by was detected by immunofluorescent of cathepsin-D in cells treated with CQ. RESULTS: We found bladder cancer cells exhibited high basal level of autophagy compared to prostate, breast or embryonic kidney cancer cells. Immunohistochemistry (IHC) detection of LC3 in human bladder TMA showed increased level of LC3 in bladder tumor tissues compared to their paired normal tissues. In the cell-based experiment, we found that autophagy inhibitors alone inhibited bladder cancer cell growth and increased apoptosis. The ROS generation and MMP disruption were not detected in cells treated with CQ or HCQ. Immunofluorescent detection of cathepsin-D in cells treated with CQ showed dispread pattern in the cytosol, suggesting the disruption of LMP in CQ-treated bladder cancer cells. CONCLUSIONS: Our results showed that human bladder cancer exhibits high basal level of autophagy. Autophagy inhibitors showed significant effects on the growth of bladder cancer cells by disruption of lysosome function and elevation of apoptotic cell death.
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- 2015
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20. MP7-13 GENETIC SIGNATURES ARE ASSOCIATED WITH ADVERSE PATHOLOGIC AND CLINICAL OUTCOMES IN PATIENTS WITH UPPER TRACT UROTHELIAL CARCINOMA (UTUC)
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Dean F. Bajorin, Hikmat Al-Ahmadie, Irina Ostrovnaya, Emily C. Zabor, Bernard H. Bochner, Philip H. Kim, John P. Sfakianos, Michael F. Berger, Victor E. Reuter, Byron K. Lee, Sasinya N. Scott, Aditya Bagrodia, Jonathan A. Coleman, Gopa Iyer, Guido Dalbagni, Qinghu Ren, A. Ari Hakimi, Jonathan E. Rosenberg, David B. Solit, Ronak Shah, and Eugene K. Cha
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medicine.medical_specialty ,Upper tract ,business.industry ,Urology ,Internal medicine ,medicine ,In patient ,business ,Gastroenterology ,Urothelial carcinoma - Published
- 2015
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21. MP72-20 PLASMACYTOID VARIANT OF UROTHELIAL CARCINOMA IS ASSOCIATED WITH E-CADHERIN LOSS
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Michael F. Berger, David B. Solit, Byron K. Lee, S. Paul Gao, Emmet Jordan, Dean F. Bajorin, Aravind Bhayankara, Sasinya N. Scott, Joseph Hreiki, Bernard H. Bochner, Hikmat Al-Ahmadie, Gopa Iyer, Jonathan E. Rosenberg, and Ricardo Ramirez
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business.industry ,Cadherin ,Urology ,Cancer research ,Medicine ,business ,Urothelial carcinoma - Published
- 2015
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22. PD33-02 OVERCOMING THE OBSTACLE OF INTRATUMOR GENETIC HETEROGENEITY IN RENAL CELL CARCINOMA THROUGH ULTRA DEEP SEQUENCING OF POOLED REGIONAL TUMOR DNA
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Michael Chevinsky, Jeremy C. Durack, Andrew G. Winer, Alexander Sankin, A. Ari Hakimi, Tarik Silk, Christopher Jakubowski, Jonathan A. Coleman, Fred Jacques, Elizabeth Y. Wei, Michael F. Berger, Paul Russo, and James J. Hsieh
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Genetics ,chemistry.chemical_compound ,chemistry ,Renal cell carcinoma ,Genetic heterogeneity ,Urology ,medicine ,Ultra deep sequencing ,Computational biology ,Biology ,medicine.disease ,DNA - Published
- 2015
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23. MP77-20 FGFR3 MUTATION ASSOCIATES WITH IMPROVED CANCER SPECIFIC OUTCOME IN UPPER TRACT UROTHELIAL CARCINOMA
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Philip H. Kim, Sasinya N. Scott, Eugene K. Cha, Bernard H. Bochner, John P. Sfakianos, Michael F. Berger, Hikmat Al-Ahmadie, Dean F. Bajorin, David B. Solit, Guido Dalbagni, A.A. Hakimi, Qinghu Ren, Aphrothiti J. Hanrahan, Ricardo Ramirez, Jonathan A. Coleman, Gopa Iyer, and Jonathan E. Rosenberg
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Oncology ,medicine.medical_specialty ,Pain score ,business.industry ,Urology ,Cancer ,Fgfr3 mutation ,medicine.disease ,Covariate analysis ,Upper tract ,Internal medicine ,medicine ,In patient ,business ,Urothelial carcinoma - Abstract
*Time-dependent covariate analysis of the effect of first on-study SRE (starting 28 days before the event onset) on time to >1⁄4 2-point increase from baseline in worst pain score in patients with a baseline score of
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- 2014
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24. MP21-19 BRANCHED EVOLUTION AND INTRATUMOR HETEROGENEITY OF UROTHELIAL CARCINOMA OF THE BLADDER
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Michael F. Berger, Sasinya N. Scott, Bernard H. Bochner, Dean F. Bajorin, John P. Sfakianos, Eugene K. Cha, Gopa Iyer, Philip H. Kim, David B. Solit, Jonathan E. Rosenberg, and Hikmat Al-Ahmadie
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Oncology ,medicine.medical_specialty ,business.industry ,Urology ,Point mutation ,medicine.medical_treatment ,Clone (cell biology) ,Phenotype ,Cystectomy ,Internal medicine ,medicine ,Cancer research ,Macrodissection ,Indel ,business ,Gene ,Urothelial carcinoma - Abstract
INTRODUCTION AND OBJECTIVES: Genomic characterization of urothelial carcinoma of the bladder (UCB) has begun to reveal significant intertumor heterogeneity when comparing samples from different subjects. As in other malignancies, intratumor heterogeneity, which may allow for tumor evolution and adaption, poses a significant challenge to personalized-medicine strategies. METHODS: To examine UCB tumor evolution and heterogeneity, we performed next-generation targeted sequencing on multiple temporally and spatially separated bladder tumors obtained at time of transurethral resection (TUR) and radical cystectomy (RC). Specimens were analyzed using a next-generation, targeted sequencing assay designed to identify point mutations, indels, and copy number alterations in 300 cancer-associated genes. RESULTS: Phylogenetic reconstruction revealed evidence of branched evolutionary growth. Evaluation of multiple tumors from individual subjects identified both shared and unique potential driver mutations. Evidence of convergent phenotypic evolution was detected through analysis of multiple distinct tumors from several subjects. For example, three separate tumors in one subject (see Figure) shared a common PIK3CA mutation (E453K) and had unique second mutations in PIK3CA (E542V, E545K, and E545Q, respectively). In another subject, distinct inactivatingmutations of EP300were identified in two temporally separated tumor samples. Macrodissection of single tumors into non-invasive and invasive components revealed significant intratumor heterogeneity; one case illustrates howanalysis of amuscleinvasive TURspecimen could result in undersampling and therebymiss the tumor clone that persisted at time of RC. CONCLUSIONS: We demonstrate branched evolution of UCB through genomic analyses of multiple temporally and spatially distinct bladder tumors from individual subjects. Macrodissection of individual tumor samples identified significant intratumor heterogeneity. These concepts may present major challenges to personalized-medicine approaches that rely on sampling of a single tumor at a specific timepoint in the evolution of a patient’s UCB.
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- 2014
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25. MP77-01 TARGETED SEQUENCING OF UPPER TRACT UROTHELIAL CARCINOMA
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Sasinya N. Scott, Dean F. Bajorin, Michael F. Berger, Qinghu Ren, Jonathan A. Coleman, Aphrothiti J. Hanrahan, A.A. Hakimi, Ricardo Ramirez, Emily C. Zabor, Philip H. Kim, Gopa Iyer, Jonathan E. Rosenberg, Hikmat Al-Ahmadie, David B. Solit, John P. Sfakianos, Guido Dalbagni, Bernard H. Bochner, and Eugene K. Cha
- Subjects
Pathology ,medicine.medical_specialty ,Upper tract ,business.industry ,Urology ,Medicine ,business ,Urothelial carcinoma - Published
- 2014
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26. Effects of intensified antihypertensive treatment in diabetic nephropathy
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Michael F. Berger, Claudia Schmidtke, Ingrid Mühlhauser, U. Didjurgeit, Ralf Bender, Peter T. Sawicki, and Anna K. Trocha
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Adult ,Male ,medicine.medical_specialty ,Physiology ,medicine.medical_treatment ,Nephropathy ,Diabetic nephropathy ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,medicine ,Humans ,Diabetic Nephropathies ,Prospective Studies ,Prospective cohort study ,Antihypertensive Agents ,Dialysis ,business.industry ,Odds ratio ,Middle Aged ,medicine.disease ,Survival Analysis ,Confidence interval ,Surgery ,Diabetes Mellitus, Type 1 ,Hypertension ,Female ,Cardiology and Cardiovascular Medicine ,business ,Follow-Up Studies ,Kidney disease - Abstract
The aim of this study was to describe the effect of intensified antihypertensive therapy based on a structured teaching and treatment programme on the prognosis of hypertensive type 1 (insulin-dependent) diabetic patients with kidney disease.The study was a controlled, prospective, parallel, 10-year follow-up trial.A sequential sample of 91 hypertensive type 1 diabetic patients with overt diabetic nephropathy was prospectively followed for 10 years. Forty-five patients (intensified antihypertensive therapy; IT group) participated in an intensified antihypertensive therapy programme and 46 patients received routine antihypertensive treatment as provided by family physicians, consultants and local hospitals (routine antihypertensive therapy; RT group).The main endpoint was death; secondary endpoints were renal replacement therapy, blindness and amputation.Blood pressure was reduced in the IT group and increased in the RT group. During the follow-up period, 29 patients died, seven in the IT group and 22 in the RT group. The survival curves were significantly different (P = 0.0008). The main causes of death were cardiac. In a multiple Cox proportional hazards model, allocation to the IT group reduced the mortality risk [relative risk (RR) = 0.213; 95% confidence interval 0.089-0.509, P = 0.00051, while age (P = 0.0039) and mean blood pressure (P= 0.0113) increased this risk. In multiple Cox or multiple logistic regression models, the risks of dialysis (RR = 0.269, 95% confidence interval 0.110-0.656, P = 0.0039), blindness (odds ratio = 0.158, 95% confidence interval 0.037-0.684, P= 0.0136), and amputation (RR = 0.181, 95% confidence interval 0.047-0.703, P= 0.0135) were significantly lower in the IT group compared with the RT group (log rank P = 0.0008).We conclude that intensified antihypertensive treatment, based on a hypertension teaching and treatment programme, reduces long-term morbidity and mortality in patients with diabetic nephropathy.
- Published
- 1999
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27. 929 NEXT-GENERATION DEEP SEQUENCING IDENTIFIES RECURRENT AND TARGETABLE GENETIC ALTERATIONS IN HIGH GRADE BLADDER UROTHELIAL CARCINOMA
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Gopa Iyer, Jonathan E. Rosenberg, Hikmat Al-Ahmadie, Philip H. Kim, Guido Dalbagni, John P. Sfakianos, Michael F. Berger, Dean F. Bajorin, Sasinya N. Scott, Ilana Rebecca Garcia-Grossman, David B. Solit, Bernard H. Bochner, and Sara Blass
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Oncology ,medicine.medical_specialty ,Bladder cancer ,ARID1A ,biology ,business.industry ,Urology ,medicine.medical_treatment ,medicine.disease ,Malignancy ,Cystectomy ,medicine.anatomical_structure ,Germline mutation ,Prostate ,Internal medicine ,biology.protein ,Medicine ,PTEN ,business ,Lymph node - Abstract
INTRODUCTION AND OBJECTIVES: High grade urothelial carcinoma (UC) is an aggressive malignancy with limited therapeutic options in the advanced, metastatic, or recurrent disease setting. Targeted genetic analysis of high grade tumors was performed to determine the prevalence of known cancer genes and to identify potential targets for therapy. METHODS: Frozen high grade bladder tumors and matched germline blood DNA were obtained from 60 patients undergoing transurethral resection (TUR) or cystectomy. Specimens were analyzed using a targeted, deep-sequencing assay designed to identify point mutations, indels, and copy number alterations in 275 cancer-associated genes. RESULTS: The cohort was predominantly male (N 49, 81%) with a median age of 71 (IQR 61, 76). Frozen tumor was obtained from radical cystectomy(RC) in 53 patients (88%), TUR in 6 (10%), and partial cystectomy in 1 (2%). 11 patients (18%) had a history of intravesical therapy. Tumor pathologic stage was Ta in 5 (8%), T1 in 5 (8 %), T2 in 11 (18%), T3 in 30 (50%), and T4 in 9 (15%). Of the 53 patients undergoing RC and lymph node dissection, 17 received neoadjuvant chemotherapy (32%) and 24 (45%) had lymph node metastases. Mean target coverage for all sequenced exons was 512X. The most common genomic event was somatic mutation of TP53, identified in 33 patients (55%). RB mutations were identified in 11 (18%). Alterations in the PI3K/AKT/mTOR signaling pathway were also common; 12 patients had mutations in PIK3CA (20%), and non-overlapping mutations were identified in other genes within the pathway including AKT1, PTEN, and MTOR. Frequent mutations in chromatin remodeling genes were also identified. KDM6A mutations were identified in 21 tumors (35%), MLL2 in 18 (30%), and ARID1A in 17 (28%). Overall, 60% of all analyzed tumors harbored potentially targetable genomic alterations, including those with alterations in ERBB2, BRAF, and FGFR3 (Figure). CONCLUSIONS: Genetic alterations are frequent in high grade bladder UC. Over half of the tumors analyzed harbor alterations in genes that have been targeted for therapeutic benefit in other solid tumors, thus providing a compelling case for clinical trials using novel agents. Analysis for correlations with clinical outcomes is ongoing to assess for the prognostic significance of these genetic events. Source of Funding: Sidney Kimmel Center for Prostate and Urologic Cancers, Michael and Zena Wiener Research and Therapeutics Program in Bladder Cancer
- Published
- 2013
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28. Intensified antihypertensive therapy is associated with improved survival in type 1 diabetic patients with nephropathy
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Peter T. Sawicki, U. Didjurgeit, Ralf Bender, Baumgartner A, Michael F. Berger, and Ingrid Mühlhauser
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Adult ,Male ,medicine.medical_specialty ,Physiology ,medicine.drug_class ,medicine.medical_treatment ,Renal function ,Blood Pressure ,Nephropathy ,Patient Education as Topic ,Diabetes mellitus ,Internal medicine ,Internal Medicine ,medicine ,Humans ,Diabetic Nephropathies ,Prospective Studies ,Renal replacement therapy ,Antihypertensive drug ,Antihypertensive Agents ,Proportional Hazards Models ,Chemotherapy ,Dose-Response Relationship, Drug ,business.industry ,Proportional hazards model ,Prognosis ,medicine.disease ,Survival Analysis ,Surgery ,Renal Replacement Therapy ,Diabetes Mellitus, Type 1 ,Blood pressure ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Objective : To determine the prognosis of treated hypertensive type 1 (insulin-dependent) diabetic patients with overt nephropathy. Design : A controlled, prospective, parallel, 5-year follow-up trial. Setting : The tertiary care centre of the Heinrich Heine University Hospital in Dusseldorf, Germany. Patients and interventions : A sequential sample of 91 hypertensive patients with overt diabetic nephropathy participated in a diabetes treatment programme. Thereafter 45 patients received intensified antihypertensive therapy including blood pressure self-monitoring and self-adjustment of antihypertensive drug treatment with the goal of permanent normalization of blood pressure values below 140/90 mmHg. The remaining 46 patients were administered routine antihypertensive therapy and formed the control group. At baseline both groups were comparable in age, sex, metabolic control and renal function. The groups differed at baseline in their duration of diabetes and blood pressure values, which were higher in the intensified antihypertensive therapy group. Outcome measures : Total mortality and the need for renal replacement therapy. Main results : Blood pressure control was significantly improved in patients who were subjected to intensified antihypertensive therapy, whereas it deteriorated in the group of patients who received routine antihypertensive therapy. At follow-up, primary end points of the study occurred in five (11%) patients of the intensified therapy group and in 19 (41%) patients of the routine therapy group. According to life table analysis, intensified antihypertensive therapy was associated with less frequent primary end points (P= 0.0058) and longer survival (P= 0.01). The differences between the groups remained significant after adjustment for covariates in the proportional hazards model. Conclusion : Participation in a treatment programme aimed at intensification of antihypertensive therapy is associated with a reduction of mortality in hypertensive type 1 diabetic patients with overt nephropathy.
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- 1995
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29. 608 COMBINING DNA-SEQ AND RNA-SEQ FOR DISCOVERY OF NOVEL MUTATIONS IN HUMAN PROSTATE CANCER
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Michael F. Berger, Mark A. Rubin, Christopher E. Barbieri, Terry Vuong, Naoki Kitabayashi, Francesca Demichelis, Arul M. Chinnaiyan, Levi A. Garraway, Ashutosh Tewari, Gunther Boysen, and Catherine S. Grasso
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Oncology ,medicine.medical_specialty ,Five prime untranslated region ,Three prime untranslated region ,business.industry ,Urology ,Intron ,Single-nucleotide polymorphism ,Molecular biology ,Transcription (biology) ,Internal medicine ,medicine ,Electrophoretic mobility shift assay ,Allele ,business ,Transcription factor - Abstract
rs1512268 on chromosome 8p21 is associated with PC susceptibility, which is located at 14kb downstream of a prostate tumor suppressor gene NKX3.1. In the present study, we aimed to identify functional or causative variants in this region conferring PC susceptibility. METHODS: To identify candidates of functional or causative variants, we performed re-sequencing and fine mapping of this region. The variants in the 3 UTR of NKX3.1 were further screened by RNA stability assay. The variants in the intron, the 5 UTR or the upstream of NKX3.1 were screened by electrophoretic mobility shift assay. The differences in the binding affinity to nuclear proteins between the alleles were confirmed by competition assays, and the nuclear protein that binds to this region was determined by supershift assays. The association between the alleles and transcriptional activities were assessed by reporter assays. NKX3.1 expression in relation to the alleles were examined in vivo by quantative real time PCR and allele specific transcript quantification assays using cDNA from normal prostate tissues. RESULTS: We identified 12 candidates of causative SNPs that were absolutely linked with each otherby re-sequencing and fine mapping of this region. Screening of these variants by RNA stability assay, electrophoretic mobility shift assay, and reporter assay indicated that rs11781886 in the 5 UTR of NKX3.1 displayed different binding affinity to nuclear proteins between the alleles, and that the transcriptional activity of the NKX3.1 promoter was significantly lower in the susceptible allele of this SNP. Sp1 was determined to be the transcription factor that binds to the susceptible G allele, but not to the nonsusceptible A allele. Allele-specific transcript quantification and quantitative PCR analyses showed that the expression of NKX3.1 transcript in the prostate was significantly lower in the subjects with the haplotype carrying the susceptible variant at rs11781886. CONCLUSIONS: These results suggest that the functional variant rs11781886 in the 5 UTR of NKX3.1 can affect its transcription by altering the binding affinity of a transcriptional factor Sp1, and results in PC susceptibility by lowering expression of NKX3.1 transcript in the prostate.
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- 2011
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30. Effects of Antihypertensive Treatment with β-Blockers on Glucose Metabolism
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Michael F. Berger and Peter T. Sawicki
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Pharmacology ,business.industry ,Medicine ,Carbohydrate metabolism ,Cardiology and Cardiovascular Medicine ,business - Published
- 1992
- Full Text
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