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Diversification of agricultural practices, including changes in crop rotation, intercropping or cover cropping, influence the soil microbiome. Here the impact of tillage and crop diversification on the soil microbiome is reported, being one of the few boreal studies. The field experiment consisted of four treatments with four replications all having a short cereal rotation practice namely an oat (Avena sativa) – spring barley (Hordeum vulgare) – wheat (Triticum aestivum) rotation for the past 10 years until spring 2018. During that period two of the treatments were conventionally tilled with moldboard ploughing whereas the other two were no-tillage treatments. From the growing season 2018 until fall 2020 the main crop in all treatments was spring barley. The first conventional tillage treatment was diversified with English ryegrass (Lolium perenne) as an undersown cover crop for the next three growing seasons. The first no-tillage treatment continued with spring barley only. The second conventional tillage and no-tillage treatment had winter rapeseed in rotation in 2019. Bulk soils were sampled in May 2018 before diversification and then in October 2018, 2019, and 2020. The results showed a clear effect of tillage on the beta-diversity of the soil microbiome and an increase in fungal richness. Barley monoculture interrupted with winter rapeseed resulted in a minor change of the fungal and bacterial community composition. Other fungal and bacterial alpha diversity measures did not react to tillage or diversification nor did the gene copy abundances involved in the N cycle. In conclusion tillage had a profound effect on the soil microbiome hindering impact of the diversification. [ABSTRACT FROM AUTHOR]

Aims: Studies on tree CH4 exchange in boreal forests regarding seasonality and role of tree canopies are rare. We aimed to quantify the contribution of boreal trees to the forest CH4 budget during spring leaf-out and to reveal the role of microbes in the CH4 exchange. Methods: Methane fluxes of downy birch and Norway spruce (Betula pubescens and Picea abies) growing on fen and upland sites were measured together with soil CH4 flux, environmental variables and microbial abundances involved in the CH4 cycle. Tree CH4 fluxes were studied from three stem heights and from shoots. Results: The trees emitted CH4 with higher stem emissions detected from birch and higher shoot emissions from spruce. The stem CH4 emissions from birches at the fen were high (mean 45 µg m−2 h−1), decreasing with stem height. Their dynamics followed soil temperature, suggesting the emitted CH4 originated from methanogenic activity, manifested in high mcrA gene copy numbers, in the peat soil. Methanogens were below the quantification limit in the tree tissues. Upscaled tree CH4 emissions accounted for 22% of the total CH4 emissions at the fen. Conclusions: The variation in stem CH4 flux between the trees and habitats is high, and the emissions from high-emitting birches increase as the spring proceeds. The lack of detection of methanogens or methanotrophs in the aboveground plant tissues suggests that these microbes did not have a significant role in the observed tree-derived fluxes. The stem-emitted CH4 from birches at the fen is presumably produced microbially in the soil. [ABSTRACT FROM AUTHOR]

Peatlands are carbon dioxide (CO2) sinks that, in parallel, release methane (CH4). The peatland carbon (C) balance depends on the interplay of decomposer and CH4-cycling microbes, vegetation, and environmental conditions. These interactions are susceptible to the changes that occur along a successional gradient from vascular plant-dominated systems to Sphagnum moss-dominated systems. Changes similar to this succession are predicted to occur from climate change. Here, we investigated how microbial and plant communities are interlinked with each other and with ecosystem C cycling along a successional gradient on a boreal land uplift coast. The gradient ranged from shoreline to meadows and fens, and further to bogs. Potential microbial activity (aerobic CO2 production; CH4 production and oxidation) and biomass were greatest in the early successional meadows, although their communities of aerobic decomposers (fungi, actinobacteria), methanogens, and methanotrophs did not differ from the older fens. Instead, the functional microbial communities shifted at the fen–bog transition concurrent with a sudden decrease in C fluxes. The successional patterns of decomposer versus CH4-cycling communities diverged at the bog stage, indicating strong but distinct microbial responses to Sphagnum dominance and acidity. We highlight young meadows as dynamic sites with the greatest microbial potential for C release. These hot spots of C turnover with dense sedge cover may represent a sensitive bottleneck in succession, which is necessary for eventual long-term peat accumulation. The distinctive microbes in bogs could serve as indicators of the C sink function in restoration measures that aim to stabilize the C in the peat. [ABSTRACT FROM AUTHOR]

Peatland restoration via rewetting aims to recover biological communities and biogeochemical processes typical to pristine peatlands. While rewetting promotes recovery of C accumulation favorable for climate mitigation, it also promotes methane (CH4) emissions. The potential for exceptionally high emissions after rewetting has been measured for Central European peatland sites previously grazed by cattle. We addressed the hypothesis that these exceptionally high CH4 emissions result from the previous land use. We analyzed the effects of cattle dung application to peat soils in a short- (2 weeks), a medium- (1 year) and a long-term (grazing) approach. We measured the CH4 production potentials, determined the numbers of methanogens by mcrA qPCR, and analyzed the methanogen community by mcrA T-RFLP-cloning-sequencing. Dung application significantly increased the CH4 production potential in the short- and the medium-term approach and non-significantly at the cattle-grazed site. The number of methanogens correlated with the CH4 production in the short- and the long-term approach. At all three time horizons, we found a shift in methanogen community due to dung application and a transfer of rumen methanogen sequences (Methanobrevibacter spp.) to the peatland soil that seemed related to increased CH4 production potential. Our findings indicate that cattle grazing of drained peatlands changes their methanogenic microbial community, may introduce rumen-associated methanogens and leads to increased CH4 production. Consequently, rewetting of previously cattle-grazed peatlands has the potential to lead to increased CH4 emissions. Careful consideration of land use history is crucial for successful climate mitigation with peatland rewetting. [ABSTRACT FROM AUTHOR]

Aims: The contribution of boreal forest plants to the methane (CH) cycle is still uncertain. We studied the above and belowground CH fluxes of common boreal plants, and assessed the possible contribution of CH producing and oxidizing microbes (methanogens and methanotrophs, respectively) to the fluxes. Methods: We measured the CH fluxes and the amounts of methanogens and methanotrophs in the above- and belowground parts of Vaccinium myrtillus, Vaccinium vitis-idaea, Calluna vulgaris and Pinus sylvestris seedlings and in non-planted soil in a microcosm experiment. Results: The shoots of C. vulgaris and P. sylvestris showed on average emissions of CH, while the shoots of the Vaccinium species indicated small CH uptake. All the root-soil-compartments consumed CH, however, the non-rooted soils showed on average small CH emission. We found methanotrophs from all the rooted and non-rooted soils. Methanogens were not detected in the plant or soil materials. Conclusions: The presence of plant roots seem to increase the amount of methanotrophs and thus CH uptake in the soil. The CH emissions from the shoots of C. vulgaris and P. sylvestris demonstrate that the plants have an important contribution to the CH exchange dynamics in the plant-soil systems. [ABSTRACT FROM AUTHOR]

A laboratory column study with peats from four sites from south-central Finland and two sites from blanket peats in the west of Ireland was established to assess the factors contributing to P, N, Fe, and dissolved organic carbon (DOC) transfer to receiving water courses from restored forestry-drained peatlands. The study indicated that the DOC and Fe release from re-wetted peats are likely governed by the amount of Fe in peat and the degree of Fe reduction upon re-wetting. In contrast to our other hypothesis concerning DOC, high degradability of organic matter was not related to high DOC release. Nitrate release was found to largely cease along with oxygen depletion, but ammonium release was considerable from a site with high nitrification potential before wetting. The release of P from anoxic peat was complicated in the sense that it appeared to be controlled by many factors simultaneously. In the nutrient-poor sites, the P release increased following re-wetting, probably because of their high easily soluble peat P content and low Al and Fe content, resulting in high anoxic P mobilization, but limited re-sorption of the mobilized P. Among the three nutrient-rich sites, there was either no P release upon re-wetting or higher P release than from the nutrient-poor sites. Low risk for P release following re-wetting in nutrient-rich sites was associated with low content in peat of easily soluble P and a high molar Fe/P ratio. [ABSTRACT FROM AUTHOR]

Forest harvesting, especially when intensified harvesting method as whole-tree harvesting with stump lifting (WTHs) are used, may increase mercury (Hg) and methylmercury (MeHg) leaching to recipient water courses. The effect can be enhanced if the underlying bedrock and overburden soil contain Hg. The impact of stem-only harvesting (SOH) and WTHs on the concentrations of Hg and MeHg as well as several other variables in the ditch water was studied using a paired catchment approach in eight drained peatland-dominated catchments in Finland (2008-2012). Four of the catchments were on felsic bedrock and four on black schist bedrock containing heavy metals. Although both Hg and MeHg concentrations increased after harvesting in all treated sites according to the randomized intervention analyses (RIAs), there was only a weak indication of a harvest-induced mobilization of Hg and MeHg into the ditches. Furthermore, no clear differences between WTHs and SOH were found, although MeHg showed a nearly significant difference (p = 0.06) between the harvesting regimes. However, there was a clear bedrock effect, since the MeHg concentrations in the ditch water were higher at catchments on black schist than at those on felsic bedrock. The pH, suspended solid matter (SSM), dissolved organic carbon (DOC), and iron (Fe) concentrations increased after harvest while the sulfate (SO4-S) concentration decreased. The highest abundances of sulfate-reducing bacteria (SRB) were found on the sites with high MeHg concentrations. The biggest changes in ditch water concentrations occurred first 2 years after harvesting. [ABSTRACT FROM AUTHOR]

Source point treatment of effluents with a high load of pharmaceutical active compounds (PhACs), such as hospital wastewater, is a matter of discussion among the scientific community. Fungal treatments have been reported to be successful in degrading this type of pollutants and, therefore, the white-rot fungus Trametes versicolor was applied for the removal of PhACs from veterinary hospital wastewater. Sixty-six percent removal was achieved in a non-sterile batch bioreactor inoculated with T. versicolor pellets. On the other hand, the study of microbial communities by means of DGGE and phylogenetic analyses led us to identify some microbial interactions and helped us moving to a continuous process. PhAC removal efficiency achieved in the fungal treatment operated in non-sterile continuous mode was 44 % after adjusting the C/N ratio with respect to the previously calculated one for sterile treatments. Fungal and bacterial communities in the continuous bioreactors were monitored as well. [ABSTRACT FROM AUTHOR]

Background and aims: Boreal mires are globally important carbon stores. In nutrient poor mires, i.e. bogs, vegetation is highly structured between hydrologically different microforms: hummocks, lawns and hollows. We studied whether the vegetation structure in four boreal bogs is reflected in the actinobacterial decomposer communities. Methods: Vegetation was determined by projection cover of plant species. Actinobacteria were detected from peat profiles at depths of 0-20, 20-40 and 40-60 cm by molecular methods. The data was analysed by a hierarchical set of ordinations. Results: The inter-bog variation in plant communities was insignificant, while the intra-bog differences (microforms) at each bog were highly significant. This variation was reflected in actinobacteria communities in the two upper peat layers. The deepest peat layer (40-60 cm) showed some inter-bog differences, possibly due to the different history of the bogs. Conclusions: Our results show that the actinobacteria communities reflect the variation in bog vegetation, which in turn is tied to hydrological conditions. The possible alterations in the water level caused by changing climate are likely to cause predictable changes in vegetation and microbial communities in bog ecosystems. [ABSTRACT FROM AUTHOR]

Tricholoma matsutake is an economically important ectomycorrhizal fungus of coniferous woodlands. Mycologists suspect that this fungus is also capable of saprotrophic feeding. In order to evaluate this hypothesis, enzyme and chemical assays were performed in the field and laboratory. From a natural population of T. matsutake in southern Finland, samples of soil-mycelium aggregate (shiro) were taken from sites of sporocarp formation and nearby control (PCR-negative) spots. Soil organic carbon and activity rates of hemicellulolytic enzymes were measured. The productivity of T. matsutake was related to the amount of utilizable organic carbon in the shiro, where the activity of xylosidase was significantly higher than in the control sample. In the laboratory, sterile pieces of bark from the roots of Scots pine were inoculated with T. matsutake and the activity rates of two hemicellulolytic enzymes (xylosidase and glucuronidase) were assayed. Furthermore, a liquid culture system showed how T. matsutake can utilize hemicellulose as its sole carbon source. Results linked and quantified the general relationship between enzymes secreted by T. matsutake and the degradation of hemicellulose. Our findings suggest that T. matsutake lives mainly as an ectomycorrhizal symbiont but can also feed as a saprotroph. A flexible trophic ecology confers T. matsutake with a clear advantage in a heterogeneous environment and during sporocarp formation. [ABSTRACT FROM AUTHOR]

Peatlands are becoming increasingly used as buffer areas to reduce nutrient transport into watercourses, but knowledge on the dynamics of the element cycle, particularly in gas phase is scant. We investigated if peatland buffer areas significantly contribute to emissions of nitrous oxide (NO) from forested catchments. We used an artificial addition of 150 kg NHNO per buffer area (146-750 kg NHNO ha) and quantified the NO emission before and after the N loading. We conducted an extensive study with eight sampling positions and sampling interval of 1-5 weeks at five buffer areas, and an intensive study using 14 sampling positions and sampling frequency of 1-7 days at one area. In the extensive study, the average fluxes were −0.33-0.14 mg NO m d before the N addition, and after the N addition they were 0.99-5.30 mg NO m d. During the intensive study, overall loss of NO was estimated to be 0.74 kg NO or 0.15 kg NO ha. Considering the impacts on stratospheric ozone depletion and global warming, the study indicated low NO emissions even when N loading increased to higher level than is likely to occur under actual conditions in forested catchments. [ABSTRACT FROM AUTHOR]

We studied methanogen activity—measured by in vitro methane production potential and by detection of the messenger RNA (mRNA) of a functional gene—in two boreal fens under high and deep water table (WT) level conditions resulting from a rainy growing season and a dry growing season. The depth of the highest CH4-producing layers differed between the years. In the wet year, the highest CH4 production rate was around 20 cm below the mean WT. In the dry year, the highest rates were measured close to the peat surface, well above the mean WT. The distribution of activity in the peat profiles of the two fens appeared to be site specific. Under deep-WT conditions, CH4 production potential was generally lower than that under high-WT conditions. Detection of the mRNA of the methanogen-specific mcrA gene indicated in situ methanogenesis in both water-saturated peat (below the WT) and unsaturated peat (above the WT). Analyses of DNA-derived and mRNA-derived methanogen community structures showed greater similarity between those two in water-saturated peat than in unsaturated peat. This suggested that favorable conditions promoted the activity of most members in methanogen communities, but unfavorable conditions showed differences between distinct community members in adaptation to adverse conditions. [ABSTRACT FROM AUTHOR]

Abstract  Soil faunal activity stimulates terrestrial carbon and nutrient cycling and maintains soil physical structure. Interestingly, the effects of faunal activity on soil microbial community composition and activity is less clear, although the microbial community evidently is the key element of terrestrial decomposition processes and nutrient cycling. We manipulated the composition of soil fauna in mesh bags with various mesh sizes (5, 45, and 1,000 µm) to exclude faunal groups based on body size. Our experiment indicated that feeding and foraging activity of nematodes and enchytraeids modified the physical–chemical properties of the soil and had long-term effects on soil bacterial community composition (measured by denaturing gel electrophoresis, colony-forming unit counts, and phospholipid fatty acid pattern). However, microbial enzyme (phosphomonoesterase, butyrate-esterase, ß-glucosidase, N-acetyl-glucosamidase, and ß-cellobiosidase) activities (measured by fluorogenic model substrates), decomposition rate of woody and cellulose material, or C and N status of the soil were not altered by the faunal treatment. Instead, enzyme activity was reduced by soil drying. Our results give support to ideas that functional redundancy is a common characteristic of the soil organisms, but no support was found for the idea that the community composition of soil decomposers had a strong link to the regulation of C and N cycles in the soil. [ABSTRACT FROM AUTHOR]

We studied the effects of wear on the understorey vegetation and the soil microbial community structure (phospholipid fatty acid pattern) in urban forests of medium fertility and of varying size in the capital area of Finland, Helsinki. These forests are important sites of recreation for a large number of residents. Consequently, the cover of understorey vegetation is affected by trampling. In the study, the cover of ground layer plant species (mosses) was found to be lower than in rural reference areas. We found that microbial activity, measured as soil respiration, was lower in the most worn forest patches as compared to less worn sites. Further, the microbial community structure of the humus layer changed due to the effects of wear. By comparing the PLFA pattern in trampled and un-trampled forest patches, we found out that the most important factors affecting the structure of microbial community were the dominant tree species (the proportion of broad-leaved tree species in relation to conifers), and the composition of the understorey vegetation. Thus, we could conclude that wear affects the microbial community structure through changes in vegetation, in the quality of litter shed, and through resultant changes in the humus pH, rather than only through soil compaction. [ABSTRACT FROM AUTHOR]

In an experiment with factorial design performed in a mature, mixed Norway spruce ( Picea abies (L.) Karst.) and Scots pine ( Pinus sylvestris L.) stand in central Finland, we studied the effects of sod cutting (exposing the mineral soil simulating mechanical site preparation) and trenching the study plot (excluding root-mycorrhizal connections) on soil organisms, decomposition rate and pine seedling performance. During two growing seasons after sod cutting, the growth of pine seedlings was significantly enhanced compared to plots with the organic layer left intact. Some epiedaphic soil animals, such as ants, spiders and certain entomobryid collembolan, were more active (pitfall sampling) on sod-cut plots. By the end of the second growing season numbers of enchytraeids were greater in the exposed mineral soil than in the mineral soil under the forest floor. Trenching induced changes in microbial phospholipid fatty acid (PLFA) pattern and collembolan community structure with decreased numbers of collembolans and biomass of fungi in organic soil of uncut plots. In addition, N content of pine seedlings increased after trenching. Overall, the effects of trenching on the measured variables were similar in sod-cut and uncut plots. We conclude that the effects of mechanical site preparation on decomposers and decomposition processes can be explained partly by exclusion of mycorrhizal-root connections and partly by a decrease in unfavourable conditions created by the organic soil layer and ground vegetation. [ABSTRACT FROM AUTHOR]

The use of wood ash in forestry has been questioned because the cadmium (Cd) concentration of ash, which varies between 1 and 20 mg kg-1 ash, exceeds the level allowed for fertilizers (3 mg kg-1) used in agriculture. To investigate the effects of Cd and ash on the fungal community composition and Cd bioavailability of the humus layer of boreal, coniferous forests, pumice or wood ash, spiked with a water soluble (CdCl2) or insoluble (CdO) form of Cd at three levels (0, 400 and 1000 mg kg-1), were applied at a fertilization level of 5000 kg ha-1 in a laboratory microcosm study. After 2 months, the humus in the microcosms was sampled and extracted for total DNA to detect changes in the fungal community by using polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) techniques. PCR was performed using the fungal 18S rDNA primers FR1 + FF390 and FR1 + NS1. The bioavailability of Cd was measured with a bacterial biosensor (Bacillus subtilis BR 151/pT0024) emitting light in the presence of Cd. Using the primer pairs FR1 + FF390 and FR1 + NS1, resulted in over 35 and 15 DGGE bands, respectively. Both primer pairs detected an ash, but no Cd effect. When using FR1 + FF390, a higher fluorescence was observed in one DGGE band of all ashed samples compared to the pumiced samples. With the primer pair FR1 + NS1, the ashed samples had a DGGE band which was not visible or only faintly visible in the pumiced samples. In addition, one DGGE band disappeared from the ashed samples. Humus layer water extracts showed that the Cd added with the pumice was in a bioavailable form. The luminescence intensity of the biosensor was dependent on the form and level of the Cd added. No luminescence was detected when the Cd was added with the ash. Ash fertilization altered the humus layer fungal community, whereas the level and form of additional Cd in the ash had no influence because it was not bioavailable. [ABSTRACT FROM AUTHOR]

In this laboratory study using microcosms with seedlings of silver birch ( Betula pendula), we explored whether Cognettia sphagnetorum (Enchytraeidae) can retain its important role of accelerating decomposition processes in soils and stimulating primary production under disturbance. We established systems with or without wood ash amendment (first-order disturbance) in the soil, either in the presence or absence of C. sphagnetorum. To test whether the systems treated with wood ash are more sensitive to an additional disturbance than the ash-free systems, the microcosms were later on disturbed by drought. To determine the influence of two disturbances on the enchytraeids and populations of other fauna, and the possible changes in the system functioning, measurements were made of the growth of birch seedlings, foliar N concentration, composition and biomass of soil microbial communities and leaching of N and dissolved organic carbon from the microcosms. Both wood ash application and drought exerted a clear negative influence on the populations of C. sphagnetorum. However, populations of this species were very resilient and recovered rapidly after drought in the ash-free soils. In the ash-free soils C. sphagnetorum tended to improve birch growth, increased the N content of the birch leaves, and decreased the root to shoot ratio. However, in the ash-treated soils enchytraeids had negative effects on these parameters. C. sphagnetorum impacted on neither N and C leaching nor soil microbes, whereas wood ash decreased microbial biomasses and changed their community structure (as determined by phospholipid fatty acids method and denaturing gel electrophoresis) and substrate utilisation potential (Biolog method). It was concluded that C. sphagnetorum can retain its influential role under varying environmental conditions, but that the stimulating or retarding effects of this species on system functioning can be context dependent. [ABSTRACT FROM AUTHOR]

The results from four compensatory fertilization experiments located at different distances (0.5, 2, 4 and 8 km) along a heavy metal deposition gradient extending from the Harjavalta Cu-Ni smelter in SW Finland are presented. The experiments were established in middle-age Scots pine stands growing on dryish sites of sorted glaciofluvial sediments. The soil type in all the experiments is ferric podsol. The treatments in the experiments consisted of liming, a powdered slow-release mineral mixture and stand-specific fertilization which comprised at least methylene urea and ammonium nitrate. Monitoring of deposition and soil solution and studies on soil chemical and microbiological properties, on the nutrient status of trees and needle litterfall, on fine root dynamics and on the growth of the tree stands were carried out during a 5-year period. There was a severe shortage of exchangeable Ca and Mg in the organic layer of the most polluted stands. Although the uppermost mineral soil layer had relatively high exchangeable Ca and Mg concentrations, the trees were not able to utilize these nutrient reserves presumably due to the toxic effects of Cu and Ni on the plant roots and mycorrhizas. The treatments that included limestone markedly decreased the Cu and Ni concentrations in the soil solution and soil organic layer, presumably due to immobilisation through precipitation or absorption. The Ca and Mg concentrations correspondingly increased, which certainly contributed to the partial recovery of fine root and stand growth. The powdered mineral mixture and the combination of methylene urea and ammonium nitrate had no short-term effect on the microbial biomass and activity. All the fertilizer treatments increased volume growth in the most polluted stand. The stand-specific fertilization increased needle mass in heavily polluted stands, but the response of the needle mass to fertilizer treatments was low in the less polluted stands. No clear evidence was found to support the role of nutrient status in tree resistance. [ABSTRACT FROM AUTHOR]

We studied microbial community composition in a primary successional chronosequence on the forefront of Lyman Glacier, Washington, United States. We sampled microbial communities in soil from nonvegetated areas and under the canopies of mycorrhizal and nonmycorrhizal plants from 20- to 80-year-old zones along the successional gradient. Three independent measures of microbial biomass were used: substrate-induced respiration (SIR), phospholipid fatty acid (PLFA) analysis, and direct microscopic counts. All methods indicated that biomass increased over successional time in the nonvegetated soil. PLFA analysis indicated that the microbial biomass was greater under the plant canopies than in the nonvegetated soils; the microbial community composition was clearly different between these two types of soils. Over the successional gradient, the microbial community shifted from bacterial-dominated to fungal-dominated. Microbial respiration increased while specific activity (respiration per unit biomass) decreased in nonvegetated soils over the successional gradient. We proposed and evaluated new parameters for estimating the C use efficiency of the soil microbial community: “Max” indicates the maximal respiration rate and “Acc” the total C released from the sample after a standard amount of substrate is added. These, as well as the corresponding specific activities (calculated as Max and Acc per unit biomass), decreased sharply over the successional gradient. Our study suggests that during the early stages of succession the microbial community cannot incorporate all the added substrate into its biomass, but rapidly increases its respiration. The later-stage microbial community cannot reach as high a rate of respiration per unit biomass but remains in an “energy-saving state,” accumulating C to its biomass. [ABSTRACT FROM AUTHOR]

Isolations of soil microfungi from the humus (F/H-layer) of a coniferous forest soil which was either unpolluted (pH 4.1) or polluted (pH 6.6) for 25 years by deposition of alkaline dust, were made by soil washing and spore plating. Both techniques revealed similar changes in species composition. Alkaline dust exposure caused a reduction in overall species numbers, but led to higher relative isolation frequencies of Mortierella alpina, Oidiodendron tenuissimum, Penicillium montanese, Sagenomella verticillata, and Trichosporiella sporotrichioides. The incidence of M. isabellina, O. cf. clamydosporium, P. spinulosum, Penicillium sp. 1, P. sclerotiorum, Trichoderma viride, and Verticillium bulbillosum was reduced on polluted sites. The amount of the mainly fungal-derived phospholipid fatty acid 18 : 2ω6 decreased by 23%, while the amount of ergosterol increased by 9% in the polluted soil. [ABSTRACT FROM AUTHOR]

The article presents a study on the effects of alkaline deposition on the epiphytic microflora of Scots pine (Pinus sylvestris L.) needles. The study used nested analyses of variance to assess the differences between the affected and control area. Results suggest that the isolation frequency Aureobasidium pullulans from phylloplane and the fungal colony forming units (CFU) can be used as biomonitor for air quality monitoring.

Near-infrared spectroscopy and soil physicochemical determinations (pH, organic matter content, total C content, NH, total N content, cation-exchange capacity, and base saturation) were used to characterize fire-or wood ash-treated humus samples. The spectroscopic and the soil physicochemical analysis data from the humus samples were used separately to explain observed variations in soil respiration and microbial biomass C by partial least-square regression. The first regression component obtained from the physicochemical and spectroscopic characterization explained 10-12% and 60-80% of the biological variation, respectively. This suggests that information on organic material collected from near-infrared spectra is very useful for explaining biological variations in forest humus. [ABSTRACT FROM AUTHOR]

Boreal forests are ecosystems with low nitrogen (N) availability that store globally significant amounts of carbon (C), mainly in plant biomass and soil organic matter (SOM). Although crucial for future climate change predictions, the mechanisms controlling boreal C and N pools are not well understood. Here, using a three-year field experiment, we compare SOM decomposition and stabilization in the presence of roots, with exclusion of roots but presence of fungal hyphae and with exclusion of both roots and fungal hyphae. Roots accelerate SOM decomposition compared to the root exclusion treatments, but also promote a different soil N economy with higher concentrations of organic soil N compared to inorganic soil N accompanied with the build-up of stable SOM-N. In contrast, root exclusion leads to an inorganic soil N economy (i.e., high level of inorganic N) with reduced stable SOM-N build-up. Based on our findings, we provide a framework on how plant roots affect SOM decomposition and stabilization. Understanding mechanisms of soil organic matter (SOM) decomposition and stabilisation improves soil-climate feedback predictions. Here the authors show that roots in boreal forest promote organic nitrogen economy and provide a framework on how roots affect decomposition and stabilisation of SOM. [ABSTRACT FROM AUTHOR]

The increased demand for harvesting energy wood raises questions about its effects on the functioning of the forest ecosystems, soil processes and biodiversity. Impacts of tree stump removal on ectomycorrhizal fungal (EMF) communities of Norway spruce saplings were studied with 454-pyrosequencing in a 3-year field experiment replicated in 3 geographical areas. This is possibly the most thorough investigation of EMF communities associated with saplings grown on sites subjected to energy wood harvesting. To separate impacts of tree stump and logging residue removal on EMF and plant variables, we used three harvesting treatments with increasing complexity from patch mounding alone (P) to patch mounding combined with logging residue removal (RP), and patch mounding combined with both logging residue and stump removal (SRP). Saplings grown in uncut forests (F) served as references for harvesting treatments. A majority of sequences (>92%) and operational taxonomic units (OTUs, 55%) were assigned as EMF. EMF OTU richness, fungal community composition or sapling growth did not differ between harvesting treatments (P, RP and SRP), while EMF OTU richness, diversity and evenness were highest and sapling growth lowest in the undisturbed reference forests (F). The short study period may partially explain the similarities in fungal and sapling variables in different harvesting treatments. In conclusion, our results indicate that neither stump removal nor logging residue removal have significant additional negative impacts on EMF communities or growth of Norway spruce saplings in the short-term compared with the impacts of more conventional harvesting methods, including clear cutting and patch mounding. [ABSTRACT FROM AUTHOR]

Methane (CH4) emissions from boreal wetlands show considerable seasonal variation, including small winter emissions. We addressed the seasonality of CH4-producing microbes by comparing archaeal communities and the rates and temperature response of CH4 production in a boreal fen at three key phases of growing season and in winter. Archaeal community analysis by terminal restriction fragment length polymorphism and cloning of 16S ribosomal DNA and reverse-transcribed RNA revealed slight community shifts with season. The main archaeal groups remained the same throughout the year and were Methanosarcinaceae, Rice cluster II and Methanomicrobiales-associated Fen cluster. These methanogens and the crenarchaeal groups 1.1c and 1.3 were detected from DNA and RNA, but the family Methanosaetaceae was detected only from RNA. Differences between DNA- and RNA-based results suggested higher stability of DNA-derived communities and better representation of the active CH4 producers in RNA. Methane production potential, measured as formation of CH4 in anoxic laboratory incubations, showed prominent seasonality. The potential was strikingly highest in winter, possibly due to accumulation of methanogenic substrates, and maximal CH4 production was observed at ca. 30 °C. Archaeal community size, determined by quantitative PCR, remained similar from winter to summer. Low production potential in late summer after a water level draw-down suggested diminished activity due to oxygen exposure. Our results indicated that archaeal community composition and size in the boreal fen varied only slightly despite the large fluctuations of methanogenic potential. Detection of mRNA of the methanogenic mcrA gene confirmed activity of methanogens in winter, accounting for previously reported winter CH4 emissions.The ISME Journal (2008) 2, 1157–1168; doi:10.1038/ismej.2008.66; published online 24 July 2008 [ABSTRACT FROM AUTHOR]