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Siliceous hot spring deposits form at Earth's surface above terrestrial hydrothermal systems, which create low-sulphidation epithermal mineral deposits deeper in the crust. Eruption of hot spring waters and precipitation of opal- A create sinter apron complexes and areas of geothermally influenced wetland. These provide habitat for higher plants that may be preserved in situ, by encrustation of their surfaces and permineralization of tissues, creating T0 plant assemblages. In this study, we review the fossil record of hot spring floras from subfossil examples forming in active hot spring areas, via fossil examples from the Cenozoic, Mesozoic and Palaeozoic to the oldest known hot spring flora, the Lower Devonian Rhynie chert. We demonstrate that the well-known megabias towards wetland plant preservation extends to hot spring floras. We highlight that the record of hot spring floras is dominated by plants preserved in situ by permineralization on geothermally influenced wetlands. Angiosperms (members of the Cyperaceae and Restionaceae) dominate Cenozoic floras. Equisetum and gleicheniaceous ferns colonized Mesozoic ( Jurassic) geothermal wetlands and sphenophytes and herbaceous lycophytes late Palaeozoic examples. Evidence of the partitioning of wetland hydrophytic and dryland mesophytic communities, a feature of active geothermal areas, is provided by well-preserved and well-exposed fossil sinter apron complexes, which record flooding of dryland environments by thermal waters and decline of local forest ecosystems. Such observations from the fossil record back-up hypotheses based on active hot springs and vegetation that suggest removal of taphonomic filtering in hot spring environments is accompanied by an increase in ecological and ecophysiological filtering. To this end we also demonstrate that in the hot spring environment, the wetland bias extends beyond broad ecology. We show that ecosystems preserved from the Cenozoic to the Mesozoic provide clear evidence that the dominant plants preserved in situ by hot spring activity are also halophytic, tolerant of high p H and high concentrations of heavy metals. By extension, we hypothesize that this is also the case in Palaeozoic hot spring settings and extended to the early land plant flora of the Rhynie chert. [ABSTRACT FROM AUTHOR]

• Premise of the study: Dated molecular phylogenies suggest a Cenozoic origin for the crown group of Equisetum. but compression fossil equisetaleans that are morphologically indistinguishable from extant Equisetum and recently discovered anatomically preserved examples strongly suggest an earlier Mesozoic initial diversification. • Methods: In situ samples of Equisetum thermale sp. nov. from the Upper Jurassic San Agustin hot spring deposit were collected and studied with the use of polished blocks, thin sections, and light microscopy. • Key results: Equisetum thermale exhibits all the morphological and anatomical characteristics of the extant crown group Equisetum. It shows a mixture of features present in the two extant subgenera, e.g., superficial stomata typical of subgenus Equisetum allied with infrequently ramifying stems typical of subgenus Hippochaete. This appears to ally E. thenrude with the least derived extant species in the genus Equisetum bogotense (sister species to the two subgenera), its association of hydromorphic and xeromorphic characters allowed it to grow as an emergent aquatic in physically and chemically stressed geothermally influenced wetlands, where it formed dense monospecific stands. Equisetum thermale, because it is preserved in situ with intact anatomy, provides clear paleoecological, biological, plus inferred paleoecophysiological evidence of adaptations known in extant species. • Conclusions: As the earliest unequivocal member of the genus, E. thermale supports the hypothesis of a Mesozoic origin. Its interred tolerance of a similar range of stresses (e.g., high salinity, alkalinity, and heavy metal concentrations) to that seen in extant Equisetum suggests early evolution and subsequent maintenance of ecophysiological innovations in the genus. [ABSTRACT FROM AUTHOR]

The Canaries have recently served as a test-bed island system for evaluating newly developed parametric biogeographical methods that can incorporate information from molecular phylogenetic dating and ages of geological events. To use such information successfully, knowledge of geological history and the fossil record is essential. Studies presenting phylogenetic datings of plant groups on oceanic islands often through necessity, but perhaps inappropriately, use the geological age of the oldest island in an archipelago as a maximum-age constraint for earliest possible introductions. Recently published papers suggest that there is little chance of informative fossil floras being found on volcanic islands, and that nothing could survive violent periods of volcanic activity. One such example is the Roque Nublo period in Gran Canaria, which is assumed to have caused the extinction of the flora of the island ( c. 5.3–3.7 Ma). However, recent investigations of Gran Canaria have identified numerous volcanic and sedimentological settings where plant remains are common. We argue, based on evidence from the Miocene–Pliocene rock and fossil records, that complete sterilization of the island is implausible. Moreover, based on fossil evidence, we conclude that the typical ecosystems of the Canary Islands, such as the laurisilva, the Pinus forest and the thermophilous scrubland, were already present on Gran Canaria during the Miocene–Pliocene. The fossil record we present provides new information, which may be used as age constraints in phylogenetic datings, in addition to or instead of the less reliable ages of island emergences or catastrophic events. We also suggest island environments that are likely to yield further fossil localities. Finally, we briefly review further examples of fossil floras of Macaronesia. [ABSTRACT FROM AUTHOR]

Aim To infer the colonization history of reed frog species endemic to the oceanic islands of São Tomé and Príncipe, Hyperolius molleri and H. thomensis, we quantified phylogeographical structure in the closely related H. cinnamomeoventris species complex, which is broadly distributed across continental Central Africa. Location The Lower Guineo-Congolian Forest and the Gulf of Guinea islands of São Tomé and Príncipe, Central Africa. Methods We combined gene and species tree analyses to investigate diversity and divergence among H. cinnamomeoventris populations, to identify the most likely dispersal route to the islands, and to infer the order in which the islands were colonized. One of the endemics ( H. molleri) is distributed on both islands and we quantified genetic divergence between populations. Results We recovered three clades in H. cinnamomeoventris corresponding to West-Central, North/East-Central and South-Central Africa. The island endemics form a monophyletic group most closely related to the West-Central African H. cinnamomeoventris clade. Populations of H. molleri on São Tomé and Príncipe are reciprocally monophyletic at mitochondrial loci but nuclear gene trees do not support this divergence. Main conclusions Genetic structure in the H. cinnamomeoventris species complex coincides with biogeographical barriers identified in previous studies of Central African rain forest taxa. Individual gene tree and species tree analyses support a single dispersal event from the Ogooué or Congo river basins (West-Central Africa) to the island of São Tomé, with subsequent divergence within São Tomé and dispersal to Príncipe. [ABSTRACT FROM AUTHOR]

Abstract Aim We propose a phylogeny of selected Hyperolius species (Anura: Hyperoliidae), based on mtDNA sequence data and parsimony analysis. This phylogeny was used to interpret the historical biogeography of the genus in Africa. Location Samples were collected throughout the distribution of Hyperolius in Africa. Methods We compiled distributional maps of all species, summarized historical changes in vegetation and climate in Africa since the late Cretaceous, and used these in combination to identify historical factors that may have contributed to speciation in these frogs. A phylogeny for Hyperolius was derived from mtDNA sequence data and interpreted in terms of climatic and vegetation changes in Africa. Main conclusions Lowland rainforest is proposed to have been the ancestral habitat of Hyperolius . The expansion of savannah and reduction of lowland rainforest were identified as important factors in the differentiation of the more basal species. Finally, the development of the Rift Valley system played an important role in the speciation of derived species with relatively limited distributions. [ABSTRACT FROM AUTHOR]

Organismal traits interact with environmental variation to mediate how species respond to shared landscapes. Thus, differences in traits related to dispersal ability or physiological tolerance may result in phylogeographic discordance among co-distributed taxa, even when they are responding to common barriers. We quantified climatic suitability and stability, and phylogeographic divergence within three reed frog species complexes across the Guineo-Congolian forests and Gulf of Guinea archipelago of Central Africa to investigate how they responded to a shared climatic and geological history. Our species-specific estimates of climatic suitability through time are consistent with temporal and spatial heterogeneity in diversification among the species complexes, indicating that differences in ecological breadth may partly explain these idiosyncratic patterns. Likewise, we demonstrated that fluctuating sea levels periodically exposed a land bridge connecting Bioko Island with the mainland Guineo-Congolian forest and that habitats across the exposed land bridge likely enabled dispersal in some species, but not in others. We did not find evidence that rivers are biogeographic barriers across any of the species complexes. Despite marked differences in the geographic extent of stable climates and temporal estimates of divergence among the species complexes, we recovered a shared pattern of intermittent climatic suitability with recent population connectivity and demographic expansion across the Congo Basin. This pattern supports the hypothesis that genetic exchange across the Congo Basin during humid periods, followed by vicariance during arid periods, has shaped regional diversity. Finally, we identified many distinct lineages among our focal taxa, some of which may reflect incipient or unrecognized species. [ABSTRACT FROM AUTHOR]

Wiens (2007 , Q. Rev. Biol. 82, 55–56) recently published a severe critique of Frost et al.'s (2006, Bull. Am. Mus. Nat. Hist. 297, 1–370) monographic study of amphibian systematics, concluding that it is “a disaster” and recommending that readers “simply ignore this study”. Beyond the hyperbole, Wiens raised four general objections that he regarded as “fatal flaws”: (1) the sampling design was insufficient for the generic changes made and taxonomic changes were made without including all type species; (2) the nuclear gene most commonly used in amphibian phylogenetics, RAG-1, was not included, nor were the morphological characters that had justified the older taxonomy; (3) the analytical method employed is questionable because equally weighted parsimony “assumes that all characters are evolving at equal rates”; and (4) the results were at times “clearly erroneous”, as evidenced by the inferred non-monophyly of marsupial frogs. In this paper we respond to these criticisms. In brief: (1) the study of Frost et al. did not exist in a vacuum and we discussed our evidence and evidence previously obtained by others that documented the non-monophyletic taxa that we corrected. [ABSTRACT FROM AUTHOR]

The Mascarene ridged frog, Ptychadena mascareniensis, is the only African amphibian species thought to occur on Madagascar and on the Seychelles and also Mascarene islands. We explored its phylogenetic relationships and intraspecific genetic differentiation to contribute to the understanding of transoceanic dispersal in amphibians. Fragments of the mitochondrial 16S rRNA gene were sequenced from specimens collected over most of the distribution area of P. mascareniensis, including populations from Madagascar, Mascarenes and Seychelles. We identified five deeply divergent clades having pairwise divergences >5%, which probably all represent cryptic species in a P. mascareniensis complex. One of these seems to be restricted to Madagascar, the Mascarenes and the Seychelles. Sequences obtained from topotypic material (Réunion) were identical to the most widespread haplotype from Madagascar. The single Mauritian/Seychellean haplotype differed by only one mutation from a Malagasy haplotype. It is likely that the Mascarene and Seychellean populations were introduced from Madagascar by humans. In contrast, the absence of the Malagasy haplotypes from Africa and the distinct divergences among Malagasy populations (16 mutations in one divergent hapolotype from northern Madagascar) suggest that Madagascar was populated by Ptychadena before the arrival of humans c. 2000 years ago. Because Madagascar has been separated from Africa since the Jurassic, this colonization must have taken place by overseas rafting, which may be a more widespread dispersal mode in amphibians than commonly thought. [ABSTRACT FROM AUTHOR]