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Abstract Background Association studies are of great interest to identify genes explaining trait variation since they deal with more than just a few alleles like classical QTL analyses. They are usually performed using collections representing a wide range of variability but which could present a genetic substructure. The aim of this paper is to demonstrate that association studies can be performed using synthetic varieties obtained after several panmictic generations. This demonstration is based on an example of association between the gibberellic acid insensitive gene (GAI) polymorphism and leaf length polymorphism in 'Herbie', a synthetic variety of perennial ryegrass. Methods Leaf growth parameters, consisted of leaf length, maximum leaf elongation rate (LERmax) and leaf elongation duration (LED), were evaluated in spring and autumn on 216 plants of Herbie with three replicates. For each plant, a sequence of 370 bp in GAI was analysed for polymorphism. Results Genetic effect was highly significant for all traits. Broad sense heritabilities were higher for leaf length and LERmax with about 0.7 in each period and 0.5 considering both periods than for LED with about 0.4 in each period and 0.3 considering both periods. GAI was highly polymorphic with an average of 12 bp between two consecutive SNPs and 39 haplotypes in which 9 were more frequent. Linkage disequilibrium declined rapidly with distance with r 2 values lower than 0.2 beyond 150 bp. Sequence polymorphism of GAI explained 8-14% of leaf growth parameter variation. A single SNP explained 4% of the phenotypic variance of leaf length in both periods which represents a difference of 33 mm on an average of 300 mm. Conclusions Synthetic varieties in which linkage disequilibrium declines rapidly with distance are suitable for association studies using the "candidate gene" approach. GAI polymorphism was found to be associated with leaf length polymorphism which was more correlated to LERmax than to LED in Herbie. It is a good candidate to explain leaf length variation in other plant material.

Reduced blue light irradiance is known to enhance leaf elongation rate (LER) in grasses, but the mechanisms involved have not yet been elucidated. We investigated whether leaf elongation response to reduced blue light could be mediated by stomata-induced variations of plant transpiration. Two experiments were carried out on tall fescue in order to monitor LER and transpiration under reduced blue light irradiance. Additionally, LER dynamics were compared with those observed in the response to vapour pressure deficit (VPD)-induced variations of transpiration. Finally, we developed a model of water flow within a tiller to simulate the observed short-term response of LER to various transpiration regimes. LER dramatically increased in response to blue light reduction and then reached new steady states, which remained higher than the control. Reduced blue light triggered a simultaneous stomatal closure which induced an immediate decrease of leaf transpiration. The hydraulic model of leaf elongation accurately predicted the LER response to blue light and VPD, resulting from an increase in the growth-induced water potential gradient in the leaf growth zone. Our results suggest that the blue light signal is sensed by stomata of expanded leaves and transduced to the leaf growth zone through the hydraulic architecture of the tiller. [ABSTRACT FROM AUTHOR]

The European Food Safety Authority concluded in February 2018 that "most uses of neonicotinoid insecticides represent a risk to wild bees and honeybees". In 2016, the French government passed a law banning the use of the five neonicotinoids previously authorized: clothianidin, imidacloprid, thiamethoxam, acetamiprid and thiacloprid. In the framework of an expert assessment conducted by the French Agency for Food, Environmental and Occupational Health and Safety to identify possible derogations, we performed a thorough assessment of the available alternatives to the five banned neonicotinoids. For each pest targeted by neonicotinoids use, we identified the main alternative pest management methods, which we then ranked for (i) efficacy for controlling the target pest, (ii) applicability (whether directly useable by farmers or in need of further research and development), (iii) durability (risk of resistance in targeted pests), and (iv) practicability (ease of implementation by farmers). We identified 152 authorized uses of neonicotinoids in France, encompassing 120 crops and 279 pest insect species (or genera). An effective alternative to neonicotinoids use was available in 96% of the 2968 case studies analyzed from the literature (single combinations of one alternative pest control method or product × one target crop plant × one target pest insect). The most common alternative to neonicotinoids (89% of cases) was the use of another chemical insecticide (mostly pyrethroids). However, in 78% of cases, at least one non-chemical alternative method could replace neonicotinoids (e.g. microorganisms, semiochemicals or surface coating). The relevance of non-chemical alternatives to neonicotinoids depends on pest feeding habits. Leaf and flower feeders are easier to control with non-chemical methods, whereas wood and root feeders are more difficult to manage by such methods. We also found that further field studies were required for many promising non-chemical methods before their introduction into routine use by farmers. Our findings, transmitted to policymakers, indicate that non-chemical alternatives to neonicotinoids do exist. Furthermore, they highlight the need to promote these methods through regulation and funding, with a view to reducing pesticide use in agriculture., (Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.)