58 results on '"João P. Nunes"'
Search Results
2. Combined therapy with adipose tissue-derived mesenchymal stromal cells and meglumine antimoniate controls lesion development and parasite load in murine cutaneous leishmaniasis caused by Leishmania amazonensis
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Ramos, Tadeu Diniz, Silva, Johnatas Dutra, da Fonseca-Martins, Alessandra Marcia, da Silveira Pratti, Juliana Elena, Firmino-Cruz, Luan, Maciel-Oliveira, Diogo, Dos-Santos, Julio Souza, Tenorio, João Ivo Nunes, de Araujo, Almair Ferreira, Freire-de-Lima, Célio Geraldo, Diaz, Bruno Lourenço, Cruz, Fernanda Ferreira, Rocco, Patricia Rieken Macedo, and de Matos Guedes, Herbert Leonel
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- 2020
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3. Dissecting the genetic basis of wheat blast resistance in the Brazilian wheat cultivar BR 18-Terena
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Goddard, Rachel, Steed, Andrew, Chinoy, Catherine, Ferreira, Jéssica Rosset, Scheeren, Pedro Luiz, Maciel, João Leodato Nunes, Caierão, Eduardo, Torres, Gisele Abigail Montan, Consoli, Luciano, Santana, Flavio Martins, Fernandes, José Mauricio Cunha, Simmonds, James, Uauy, Cristobal, Cockram, James, and Nicholson, Paul
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- 2020
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4. Portuguese-Brazilian evidence-based guideline on the management of hyperglycemia in type 2 diabetes mellitus
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Bertoluci, Marcello Casaccia, Salles, João Eduardo Nunes, Silva-Nunes, José, Pedrosa, Hermelinda Cordeiro, Moreira, Rodrigo Oliveira, da Silva Duarte, Rui Manuel Calado, da Costa Carvalho, Davide Mauricio, Trujilho, Fábio Rogério, dos Santos Raposo, João Filipe Cancela, Parente, Erika Bezerra, Valente, Fernando, de Moura, Fábio Ferreira, Hohl, Alexandre, Melo, Miguel, Araujo, Francisco Garcia Pestana, de Araújo Principe, Rosa Maria Monteiro Castro, Kupfer, Rosane, Costa e Forti, Adriana, Valerio, Cynthia Melissa, Ferreira, Hélder José, Duarte, João Manuel Sequeira, Saraiva, José Francisco Kerr, Rodacki, Melanie, Castelo, Maria Helane Costa Gurgel, Monteiro, Mariana Pereira, Branco, Patrícia Quadros, de Matos, Pedro Manuel Patricio, de Melo Pereira de Magalhães, Pedro Carneiro, Betti, Roberto Tadeu Barcellos, Réa, Rosângela Roginski, Trujilho, Thaisa Dourado Guedes, Pinto, Lana Catani Ferreira, and Leitão, Cristiane Bauermann
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- 2020
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5. Laughlin States Change Under Large Geometry Deformations and Imaginary Time Hamiltonian Dynamics
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Gabriel Matos, Bruno Mera, José M. Mourão, Paulo D. Mourão, and João P. Nunes
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High Energy Physics - Theory ,Condensed Matter - Strongly Correlated Electrons ,Quantum Physics ,Strongly Correlated Electrons (cond-mat.str-el) ,High Energy Physics - Theory (hep-th) ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Mathematics::Differential Geometry ,Mathematical Physics (math-ph) ,Quantum Physics (quant-ph) ,Mathematical Physics ,81-10, 81S, 82-10 - Abstract
We study the change of the Laughlin states under large deformations of the geometry of the sphere and the plane, associated with Mabuchi geodesics on the space of metrics with Hamiltonian $S^1$-symmetry. For geodesics associated with the square of the symmetry generator, as the geodesic time goes to infinity, the geometry of the sphere becomes that of a thin cigar collapsing to a line and the Laughlin states become concentrated on a discrete set of $S^1$--orbits, corresponding to Bohr-Sommerfeld orbits of geometric quantization. The lifting of the Mabuchi geodesics to the bundle of quantum states, to which the Laughlin states belong, is achieved via generalized coherent state transforms, which correspond to the KZ parallel transport of Chern-Simons theory.
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- 2022
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6. Development of Genomic SSR Markers and Molecular Characterization of Magnaporthe oryzae Isolates from Wheat in Brazil
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Pereira, Jorge Fernando, Consoli, Luciano, de Souza Bombonatto, Estevon Alexandre, Bonato, Ana Lídia Variani, and Maciel, João Leodato Nunes
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- 2014
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7. Human Cystathionine γ-Lyase Is Inhibited by s-Nitrosation: A New Crosstalk Mechanism between NO and H2S
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Alexandra M. M. Antunes, Catarina S. Tomé, Dalila G. F. Fernandes, João B. Vicente, João P. Nunes, Karim Zuhra, Alessandro Giuffrè, and João M. F. Costa
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gasotransmitters ,Physiology ,Clinical Biochemistry ,hydrogen sulfide ,Transsulfuration ,RM1-950 ,Biochemistry ,Article ,Nitric oxide ,crosstalk ,S-Nitrosoglutathione ,chemistry.chemical_compound ,Signal-ing ,Molecular Biology ,Gasotransmitters ,cystathionine γ-lyase ,s-nitrosoglutathione ,Cystathionine ?-lyase ,biology ,Chemistry ,Cell Biology ,Cystathionine beta synthase ,Second messenger system ,biology.protein ,Therapeutics. Pharmacology ,Signal transduction ,signaling ,Cysteine - Abstract
The ‘gasotransmitters’ hydrogen sulfide (H2S), nitric oxide (NO), and carbon monoxide (CO) act as second messengers in human physiology, mediating signal transduction via interaction with or chemical modification of protein targets, thereby regulating processes such as neurotransmission, blood flow, immunomodulation, or energy metabolism. Due to their broad reactivity and potential toxicity, the biosynthesis and breakdown of H2S, NO, and CO are tightly regulated. Growing evidence highlights the active role of gasotransmitters in their mutual cross-regulation. In human physiology, the transsulfuration enzymes cystathionine β-synthase (CBS) and cystathionine γ-lyase (CSE) are prominent H2S enzymatic sources. While CBS is known to be inhibited by NO and CO, little is known about CSE regulation by gasotransmitters. Herein, we investigated the effect of s-nitrosation on CSE catalytic activity. H2S production by recombinant human CSE was found to be inhibited by the physiological nitrosating agent s-nitrosoglutathione (GSNO), while reduced glutathione had no effect. GSNO-induced inhibition was partially reverted by ascorbate and accompanied by the disappearance of one solvent accessible protein thiol. By combining differential derivatization procedures and mass spectrometry-based analysis with functional assays, seven out of the ten protein cysteine residues, namely Cys84, Cys109, Cys137, Cys172, Cys229, Cys307, and Cys310, were identified as targets of s-nitrosation. By generating conservative Cys-to-Ser variants of the identified s-nitrosated cysteines, Cys137 was identified as most significantly contributing to the GSNO-mediated CSE inhibition. These results highlight a new mechanism of crosstalk between gasotransmitters.
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- 2021
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8. The influence of glycated hemoglobin in a study comparing patients who required hospitalization or not
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Bonamichi, Beatriz Dal Santo Francisco, Salles, João Eduardo Nunes, Sargaço, Rubens Aldo, and Cury, Adriano Namo
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- 2015
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9. A Metabolomics-Inspired Strategy for the Identification of Protein Covalent Modifications
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João P. Nunes, Alexandra M. M. Antunes, Carolina Nunes, Judit Morello, Catarina Charneira, Sofia Gouveia-Fernandes, Jacinta Serpa, Centro de Estudos de Doenças Crónicas (CEDOC), and NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)
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Data search ,02 engineering and technology ,Computational biology ,010402 general chemistry ,Proteomics ,01 natural sciences ,lcsh:Chemistry ,Chemometrics ,Metabolomics ,histones ,Original Research ,mass spectrometry ,Chemistry ,General Chemistry ,021001 nanoscience & nanotechnology ,chemometrics ,metabolomics ,0104 chemical sciences ,adductomics ,lcsh:QD1-999 ,Adductomics ,Glycidamide ,Covalent bond ,glycidamide ,acrylamide ,Identification (biology) ,0210 nano-technology ,toxicology - Abstract
This work was supported by Fundação para a Ciência e a Tecnologia (FCT), Portugal, through projects UID/QUI/00100/2019, IF/01091/2013/CP1163/CT0001 and PTDC/QUIQAN/32242/2017 as well as doctoral fellowships SFRH/BD/102846/2014 (to CC) and SFRH/BD/140157/2018 (to JN);joint funding from FCT and the COMPETE Program is also acknowledge through RNEM-LISBOA-01-0145-FEDER-022125-funded postdoctoral fellowship (to JM). Identification of protein covalent modifications (adducts) is a challenging task mainly due to the lack of data processing approaches for adductomics studies. Despite the huge technological advances in mass spectrometry (MS) instrumentation and bioinformatics tools for proteomics studies, these methodologies have very limited success on the identification of low abundant protein adducts. Herein we report a novel strategy inspired on the metabolomics workflows for the identification of covalently-modified peptides that consists on LC-MS data preprocessing followed by statistical analysis. The usefulness of this strategy was evaluated using experimental LC-MS data of histones isolated from HepG2 and THLE2 cells exposed to the chemical carcinogen glycidamide. LC-MS data was preprocessed using the open-source software MZmine and potential adducts were selected based on the m/z increments corresponding to glycidamide incorporation. Then, statistical analysis was applied to reveal the potential adducts as those ions are differently present in cells exposed and not exposed to glycidamide. The results were compared with the ones obtained upon the standard proteomics methodology, which relies on producing comprehensive MS/MS data by data dependent acquisition and analysis with proteomics data search engines. Our novel strategy was able to differentiate HepG2 and THLE2 and to identify adducts that were not detected by the standard methodology of adductomics. Thus, this metabolomics driven approach in adductomics will not only open new opportunities for the identification of protein epigenetic modifications, but also adducts formed by endogenous and exogenous exposure to chemical agents. publishersversion published
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- 2019
10. Mass Spectrometry-Based Methodologies for Targeted and Untargeted Identification of Protein Covalent Adducts (Adductomics): Current Status and Challenges
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Alexandra M. M. Antunes, Catarina Charneira, Judit Morello, João P. Nunes, João A. Rodrigues, and Sofia A. Pereira
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0301 basic medicine ,Biomedical Engineering ,protein covalent adducts ,Bioengineering ,Review ,Computational biology ,Health outcomes ,Mass spectrometry ,Biochemistry ,lcsh:Chemistry ,03 medical and health sciences ,0302 clinical medicine ,lcsh:Science ,lcsh:QH301-705.5 ,mass spectrometry ,Chemistry ,business.industry ,3. Good health ,adductomics ,030104 developmental biology ,Adductomics ,lcsh:Biology (General) ,lcsh:QD1-999 ,Covalent bond ,Human exposure ,030220 oncology & carcinogenesis ,Identification (biology) ,lcsh:Q ,Personalized medicine ,business ,Biotechnology - Abstract
Protein covalent adducts formed upon exposure to reactive (mainly electrophilic) chemicals may lead to the development of a wide range of deleterious health outcomes. Therefore, the identification of protein covalent adducts constitutes a huge opportunity for a better understanding of events underlying diseases and for the development of biomarkers which may constitute effective tools for disease diagnosis/prognosis, for the application of personalized medicine approaches and for accurately assessing human exposure to chemical toxicants. The currently available mass spectrometry (MS)-based methodologies, are clearly the most suitable for the analysis of protein covalent modifications, providing accuracy, sensitivity, unbiased identification of the modified residue and conjugates along with quantitative information. However, despite the huge technological advances in MS instrumentation and bioinformatics tools, the identification of low abundant protein covalent adducts is still challenging. This review is aimed at summarizing the MS-based methodologies currently used for the identification of protein covalent adducts and the strategies developed to overcome the analytical challenges, involving not only sample pre-treatment procedures but also distinct MS and data analysis approaches.
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- 2019
11. Segal-Bargmann transforms from hyperbolic Hamiltonians
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Thomas Thiemann, João P. Nunes, William D. Kirwin, and José Mourão
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FOS: Physical sciences ,01 natural sciences ,symbols.namesake ,Factorization ,FOS: Mathematics ,0101 mathematics ,Heat kernel ,Mathematical Physics ,Mathematics ,Mathematical physics ,Applied Mathematics ,Analytic continuation ,010102 general mathematics ,Hilbert space ,Mathematical Physics (math-ph) ,81.44, 81S, 30H ,Imaginary time ,Functional Analysis (math.FA) ,010101 applied mathematics ,Mathematics - Functional Analysis ,Fourier transform ,Mathematics - Symplectic Geometry ,symbols ,Symplectic Geometry (math.SG) ,Hamiltonian (quantum mechanics) ,Analysis ,Analytic function - Abstract
We consider the imaginary time flow of a quadratic hyperbolic Hamiltonian on the symplectic plane, apply it to the Schrodinger polarization and study the corresponding evolution of polarized sections. The flow is periodic in imaginary time and the evolution of polarized sections has interesting features. On the time intervals for which the polarization is real or Kahler, the half–form corrected time evolution of polarized sections is given by unitary operators which turn out to be equivalent to the classical Segal-Bargmann transforms (which are usually associated to the quadratic elliptic Hamiltonian H = 1 2 p 2 and to the heat operator). At the right endpoint of these intervals, the evolution of polarized sections is given by the Fourier transform from the Schrodinger to the momentum representation. In the complementary intervals of imaginary time, the polarizations are anti–Kahler and the Hilbert space of polarized sections collapses to H = { 0 } . Hyperbolic quadratic Hamiltonians thus give rise to a new factorization of the Segal-Bargmann transform, which is very different from the usual one, where one first applies a bounded contraction operator (the heat kernel operator), mapping L 2 –states to real analytic functions with unique analytic continuation, and then one applies analytic continuation. In the factorization induced by an hyperbolic complexifier, both factors are unbounded operators but their composition is, in the Kahler or real sectors, unitary. In another paper [24] , we explore the application of the above family of unitary transforms to the definition of new holomorphic fractional Fourier transforms.
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- 2019
12. Pyridazinediones deliver potent, stable, targeted and efficacious antibody–drug conjugates (ADCs) with a controlled loading of 4 drugs per antibody
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Antoine Maruani, Stephen Caddick, Eifion Robinson, Mark E. B. Smith, João P. Nunes, Vessela Vassileva, James R. Baker, R. Barbara Pedley, João C. F. Nogueira, and Vijay Chudasama
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Drug ,Chemistry, Multidisciplinary ,TRASTUZUMAB ,BIOCONJUGATION ,General Chemical Engineering ,media_common.quotation_subject ,THERAPEUTIC INDEX ,Pharmacology ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,Therapeutic index ,Trastuzumab ,In vivo ,LINKER STABILITY ,medicine ,BREAST-CANCER ,TECHNOLOGY ,REAGENTS ,STRATEGY ,media_common ,Science & Technology ,Bioconjugation ,010405 organic chemistry ,SITE-SPECIFIC CONJUGATION ,General Chemistry ,Combinatorial chemistry ,In vitro ,0104 chemical sciences ,ATTACHMENT ,body regions ,Chemistry ,Monomethyl auristatin E ,chemistry ,Physical Sciences ,medicine.drug ,Conjugate - Abstract
Herein we report the use of pyridazinediones to functionalise the native solvent accessible interstrand disulfide bonds in trastuzumab with monomethyl auristatin E (MMAE). This method of conjugation delivers serum stable antibody–drug conjugates (ADCs) with a controlled drug loading of 4. Moreover, we demonstrate that the MMAE-bearing ADCs are potent, selective and efficacious against cancer cell lines in both in vitro and in vivo models.
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- 2017
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13. Complex symplectomorphisms and pseudo-Kähler islands in the quantization of toric manifolds
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William D. Kirwin, José Mourão, and João P. Nunes
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Discrete mathematics ,Pointwise ,Dense set ,General Mathematics ,010102 general mathematics ,Degenerate energy levels ,Toric manifold ,Positive-definite matrix ,01 natural sciences ,Combinatorics ,symbols.namesake ,0103 physical sciences ,symbols ,010307 mathematical physics ,0101 mathematics ,Hamiltonian (quantum mechanics) ,Convex function ,Mathematics::Symplectic Geometry ,Symplectic geometry ,Mathematics - Abstract
Let $$P$$ be a Delzant polytope. We show that the quantization of the corresponding toric manifold $$X_{P}$$ in toric Kahler polarizations and in the toric real polarization are related by analytic continuation of Hamiltonian flows evaluated at time $$t = {\sqrt{-1}}s$$ . We relate the quantization of $$X_{P}$$ in two different toric Kahler polarizations by taking the time- $${\sqrt{-1}}s$$ Hamiltonian “flow” of strongly convex functions on the moment polytope $$P$$ . By taking $$s$$ to infinity, we obtain the quantization of $$X_{P}$$ in the (singular) real toric polarization. Recall that $$X_{P}$$ has an open dense subset which is biholomorphic to $$({\mathbb {C}}^{*})^{n}$$ . The quantization of $$X_{P}$$ in a toric Kahler polarization can also be described by applying the complexified Hamiltonian flow of the Abreu–Guillemin symplectic potential $$g$$ , at time $$t={\sqrt{-1}}$$ , to an appropriate finite-dimensional subspace of quantum states in the quantization of $$T^{*}{\mathbb {T}}^{n}$$ in the vertical polarization. By taking other imaginary times, $$t= k {\sqrt{-1}}, k\in {\mathbb {R}}$$ , we describe toric Kahler metrics with cone singularities along the toric divisors in $$X_{P}$$ . For convex Hamiltonian functions and sufficiently negative imaginary part of the complex time, we obtain degenerate Kahler structures which are negative definite in some regions of $$X_{P}$$ . We show that the pointwise and $$L^2$$ -norms of quantum states are asymptotically vanishing on negative-definite regions.
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- 2015
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14. Functional native disulfide bridging enables delivery of a potent, stable and targeted antibody–drug conjugate (ADC)
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James R. Baker, Vijay Chudasama, Eifion Robinson, João P. Nunes, Vineeth Rajkumar, Mark E. B. Smith, Vessela Vassileva, Maurício Morais, R. Barbara Pedley, and Stephen Caddick
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Antibody-drug conjugate ,Immunoconjugates ,Chemistry, Multidisciplinary ,BIOCONJUGATION ,TRASTUZUMAB ,education ,THERAPEUTIC INDEX ,PROTEIN ,Catalysis ,chemistry.chemical_compound ,Blood serum ,Materials Chemistry ,BREAST-CANCER ,Humans ,STRATEGY ,Disulfides ,Cell Proliferation ,Fluorescent Dyes ,FRAGMENT ,Oligopeptide ,Science & Technology ,Bioconjugation ,Chemistry ,Organic Chemistry ,Metals and Alloys ,Antibodies, Monoclonal ,General Chemistry ,Combinatorial chemistry ,humanities ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,body regions ,Monomethyl auristatin E ,Physical Sciences ,MCF-7 Cells ,Ceramics and Composites ,Click chemistry ,Click Chemistry ,03 Chemical Sciences ,Oligopeptides ,Linker ,Conjugate - Abstract
Herein we report the use of next generation maleimides (NGMs) for the construction of a potent antibody-drug conjugate (ADC) via functional disulfide bridging. The linker has excellent stability in blood serum and the ADC, armed with monomethyl auristatin E (MMAE), shows excellent potency and cancer cell selectivity in vitro.
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- 2015
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15. High resolution mass spectrometry-based methodologies for identification of Etravirine bioactivation to reactive metabolites: In vitro and in vivo approaches
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Cristina C. Jacob, Alexandra M. M. Antunes, M. Conceição Oliveira, Karina Soto, Jorge Grilo, Ana L.A. Godinho, João P. Nunes, Diogo F M Silva, Sofia A. Pereira, Inês L. Martins, Catarina Charneira, and M. Matilde Marques
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0301 basic medicine ,Drug ,Adult ,Spectrometry, Mass, Electrospray Ionization ,Nevirapine ,Efavirenz ,media_common.quotation_subject ,Pharmaceutical Science ,Etravirine ,HIV Infections ,Pharmacology ,Activation, Metabolic ,03 medical and health sciences ,chemistry.chemical_compound ,In vivo ,Tandem Mass Spectrometry ,Nitriles ,medicine ,Humans ,media_common ,Aged ,Reverse-transcriptase inhibitor ,Neurotoxicity ,Glutathione ,Middle Aged ,medicine.disease ,Pyridazines ,030104 developmental biology ,Pyrimidines ,chemistry ,Liver ,Spectrometry mass ionization electrospray ionization ,Reverse Transcriptase Inhibitors ,Female ,medicine.drug ,HIV infections ,Chromatography, Liquid - Abstract
Drug bioactivation to reactive metabolites capable of covalent adduct formation with bionucleophiles is a major cause of drug-induced adverse reactions. Therefore, elucidation of reactive metabolites is essential to unravel the toxicity mechanisms induced by drugs and thereby identify patient subgroups at higher risk. Etravirine (ETR) was the first second-generation Non-Nucleoside Reverse Transcriptase Inhibitor (NNRTI) to be approved, as a therapeutic option for HIV-infected patients who developed resistance to the first-generation NNRTIs. Additionally, ETR came into market aiming to overcome some adverse effects associated with the previously used efavirenz (neurotoxicity) and nevirapine (hepatotoxicity) therapies. Nonetheless, post-marketing reports of severe ETR-induced skin rash and hypersensitivity reactions have prompted the U.S. FDA to issue a safety alert on ETR. Taking into consideration that ETR usage may increase in the near future, due to the possible use of the drug for coinfection with malaria and HIV, the development of reliable prognostic tools for early risk/benefit estimations is urgent. In the current study, high resolution mass spectrometry-based methodologies were integrated with MS3 experiments for the identification of reactive ETR metabolites/adducts: 1) in vitro incubation of the drug with human and rat liver S9 fractions in the presence of Phase I and II co-factors, including glutathione, as a trapping bionucleophile; and 2) in vivo, using urine samples from HIV-infected patients on ETR therapy. We obtained evidence for multiple bioactivation pathways leading to the formation of covalent adducts with glutathione and N-acetyl-L-cysteine. These results suggest that similar reactions may occur with cysteine residues of proteins, supporting a role for ETR bioactivation in the onset of the toxic effects elicited by the drug. Additionally, ETR metabolites stemming from amine oxidation, with potential toxicological significance, were identified in vitro and in vivo. Also noteworthy is the fact that new metabolic conjugation pathways of glucuronide metabolites were demonstrated for the first time, raising questions about their potential toxicological implications. In conclusion, these results represent not only a contribution towards the elucidation of new metabolic pathways of drugs in general but also an important step towards the elucidation of potentially toxic ETR pathways, whose understanding may be crucial for reliable risk/benefit estimations of ETR-based regimens.
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- 2017
16. Resistance training reduces metabolic syndrome and inflammatory markers in older women: A randomized controlled trial
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Crisieli M, Tomeleri, Mariana F, Souza, Roberto C, Burini, Cláudia R, Cavaglieri, Alex S, Ribeiro, Melissa, Antunes, João P, Nunes, Danielle, Venturini, Décio S, Barbosa, Luís B, Sardinha, and Edilson S, Cyrino
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Blood Glucose ,Metabolic Syndrome ,Tumor Necrosis Factor-alpha ,Blood Pressure ,Resistance Training ,Middle Aged ,Body Mass Index ,C-Reactive Protein ,Outcome Assessment, Health Care ,Body Composition ,Humans ,Female ,Muscle Strength ,Biomarkers ,Aged - Abstract
This study analyzed the effects of a 12-week resistance training (RT) program without dietary interventions on metabolic syndrome (MetS) components and inflammatory biomarkers in older women.Fifty-three older women (mean [±SD] age 70.4 ± 5.7 years; mean body mass index 26.7 ± 4.0 kg/mAfter the 12-week period, there were significantly reductions (P 0.05) in glucose levels (-20.4% vs -0.3%), waist circumference (-1.5% vs +2.0%), and systolic BP (-6.2% vs +0.9%), and complete normalization of MetS prevalence (18% at baseline vs. 0% after 12-weeks RT) in the TG. Moreover, C-reactive protein and tumor necrosis factor-α concentrations decreased in the TG (-28.6% and -21.6%, respectively), but increased in the CG (+34.5% and +13.3%, respectively). In addition there were positive improvements in the MetS Z-score in the TG but not CG (-21.6% vs +13.3%, respectively).The results suggest that a 12-week RT program seems to effectively reduce MetS components and inflammatory biomarkers in older women, regardless of dietary intervention. The RT-induced adaptations in body composition and inflammatory biomarkers appear to be related to healthy adaptations in risk factors for MetS.
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- 2017
17. Next generation maleimides enable the controlled assembly of antibody–drug conjugates via native disulfide bond bridging
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João P. Nunes, Mark E. B. Smith, Vijay Chudasama, Stephen Caddick, James R. Baker, Antoine Maruani, Kerry A. Chester, and Felix F. Schumacher
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Drug ,media_common.quotation_subject ,macromolecular substances ,Antibodies, Monoclonal, Humanized ,Biochemistry ,Antibodies ,Maleimides ,medicine ,Molecule ,Doxorubicin ,Disulfides ,Physical and Theoretical Chemistry ,skin and connective tissue diseases ,neoplasms ,media_common ,Molecular Structure ,biology ,Chemistry ,Organic Chemistry ,Disulfide bond ,Trastuzumab ,Combinatorial chemistry ,Small molecule ,3. Good health ,body regions ,Homogeneous ,biology.protein ,Antibody ,Conjugate ,medicine.drug - Abstract
Highly homogeneous ADCs are generated by the efficient bridging of interchain disulfide bonds in trastuzumab, using next generation maleimides., The advent of Adcetris™ and Kadcyla™, two recently FDA-approved antibody–drug conjugates (ADCs), in the clinic has had a major impact on the treatment of lymphoma and breast cancer patients, respectively, worldwide. Despite these successes many new ADCs fail at various stages of development, often due to shortcomings in the methods used for their assembly. To address this problem we have developed next generation maleimides (NGMs), which specifically re-bridge reduced interchain disulfide bonds and allow the efficient conjugation of small molecules to antibodies, without the need for engineering of the target antibody. The method is site-specific and generates near homogeneous products in good yields. Moreover, adjustment of the reaction conditions allows control of the conjugation in terms of stoichiometry (drug-loading) and site selectivity. Using this method we prepared a series of ADCs from trastuzumab and doxorubicin (DOX) with a controlled drug-to-antibody ratio (DAR) of 1, 2, 3 and 4. All of these constructs were fully active by ELISA and had more than 90% of re-bridged disulfide bonds by CE-SDS when compared to clinical grade antibody. Furthermore, digest experiments of the DAR 2 material revealed that almost all of the drug had been targeted to the Fab arms of the antibody. Thus, NGMs offer a flexible and simple platform for the controlled assembly of ADCs from an antibody.
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- 2014
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18. Comparing effects of tillage treatments performed with animal traction on soil physical properties and soil electrical resistivity: preliminary experimental results
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João Domingos Rodrigues, Antonio Paz-González, Tomás de Figueiredo, João P. Nunes, Aitor García-Tomillo, Jorge Dafonte Dafonte, Arlindo Almeida, Zulimar Hernández, and Universidade de Santiago de Compostela. Departamento de Enxeñaría Agroforestal
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0106 biological sciences ,Materials science ,Agriculture (General) ,medicine.medical_treatment ,Soil science ,Animal traction ,01 natural sciences ,Saturated hydraulic conductivity ,S1-972 ,Soil compaction (agriculture) ,Hydraulic conductivity ,Electrical resistivity and conductivity ,medicine ,Geotechnical engineering ,Electrical resistivity tomography ,Soil compaction ,animal traction ,Agriculture ,04 agricultural and veterinary sciences ,Traction (orthopedics) ,Tillage ,040103 agronomy & agriculture ,Electrical Resistivity Tomography ,0401 agriculture, forestry, and fisheries ,General Agricultural and Biological Sciences ,010606 plant biology & botany - Abstract
Soil Compaction results from compressive forces applied to compressible soil by machinery wheels, combined with tillage operations. Draft animal‐pulled equipment may also cause soil compaction, but a huge gap exists on experimental data to adequately assess their impacts and, actually, animal traction is an option seen with increasing potential to contribute to sustainable agriculture, especially in mountain areas. This study was conducted to assess the impacts on soil compaction of tillage operations with motor tractor and draft animals. In a farm plot (Vale de Frades, NE Portugal) treatments were applied in sub‐plots (30 m x 3 m), consisting in a two way tillage with tractor (T), a pair of cows (C) and a pair of donkeys (D). Undisturbed soil samples (120) were taken before and after operations for bulk density (BD) and saturated hydraulic conductivity (Ks). The relative changes in BD observed after tillage in the 0-0.05 m soil depth increased after operations in all treatments. The increase was higher in the tractor sub-plot (15%) than in those where animal traction was used (8%). Before operation Ks class was rapid and fast in all samples, and after operation this value was reduced to 33% in T, whereas it reached 83% in C. Electrical Resistivity Tomography (ERT) was useful as a tool to identify the alterations caused by tillage operations on soil physical status. These preliminary results confirm the potential of animal traction as an option for mountain agri‐environments, yet it requires much wider research to soundly ground its assets. Authors wish to acknowledge the most relevant contribution of the farmers of Vale de Frades involved in the experiment, for their enthusiasm and refined performance in the field, accepting to freely provide their time, their work and their draft animals to carry out the required operations. info:eu-repo/semantics/publishedVersion
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- 2017
19. Quantization of some moduli spaces of parabolic vector bundles on $${{\mathbb C}{\mathbb P}^1}$$
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Carlos Florentino, José Mourão, Indranil Biswas, and João P. Nunes
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010102 general mathematics ,Mathematical analysis ,Mathematics::Analysis of PDEs ,Vector bundle ,Theta function ,Parabolic cylinder function ,01 natural sciences ,Moduli space ,Elliptic curve ,Parabolic cylindrical coordinates ,0103 physical sciences ,010307 mathematical physics ,Geometry and Topology ,0101 mathematics ,Mathematics::Symplectic Geometry ,Analysis ,Splitting principle ,Symplectic geometry ,Mathematics - Abstract
We address quantization of the natural symplectic structure on a moduli space of parabolic vector bundles of parabolic degree zero over CP 1 with four parabolic points and parabolic weights in {0,1/2}. Identifying such parabolic bundles as vector bundles on an elliptic curve, we obtain explicit expressions for the corresponding non-abelian theta func- tions. These non-abelian theta functions are described in terms of certain naturally defined distributions on the compact group SU(2).
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- 2012
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20. A congenital activating mutant of WASp causes altered plasma membrane topography and adhesion under flow in lymphocytes
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Andrew Forge, Aleksandar Ivetic, Adrian J. Thrasher, Joao Metelo, Siobhan O. Burns, Dale Moulding, David Killock, João P. Nunes, and Ruth Taylor
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Podosome ,Immunology ,Gene Expression ,macromolecular substances ,Biochemistry ,Cell membrane ,Cell Line, Tumor ,Cell Adhesion ,medicine ,Humans ,Lymphocytes ,L-Selectin ,Cytoskeleton ,Cell adhesion ,Cells, Cultured ,Microvilli ,biology ,Cell Membrane ,Wiskott–Aldrich syndrome protein ,Genetic Diseases, X-Linked ,Leukopenia ,Cell Biology ,Hematology ,Adhesion ,Microvillus ,Actins ,Cell biology ,medicine.anatomical_structure ,Mutation ,Leukocytes, Mononuclear ,biology.protein ,L-selectin ,Wiskott-Aldrich Syndrome Protein - Abstract
Leukocytes rely on dynamic actin-dependent changes in cell shape to pass through blood vessels, which is fundamental to immune surveillance. Wiskott-Aldrich Syndrome protein (WASp) is a hematopoietic cell–restricted cytoskeletal regulator important for modulating cell shape through Arp2/3-mediated actin polymerization. A recently identified WASpI294T mutation was shown to render WASp constitutively active in vivo, causing increased filamentous (F)–actin polymerization, high podosome turnover in macrophages, and myelodysplasia. The aim of this study was to determine the effect of WASpI294T expression in lymphocytes. Here, we report that lymphocytes isolated from a patient with WASpI294T, and in a cellular model of WASpI294T, displayed abnormal microvillar architecture, associated with an increase in total cellular F-actin. Microvillus function was additionally altered as lymphocytes bearing the WASpI294T mutation failed to roll normally on L-selectin ligand under flow. This was not because of defects in L-selectin expression, shedding, cytoskeletal anchorage, or membranal positioning; however, under static conditions of adhesion, WASpI294T-expressing lymphocytes exhibited altered dynamic interaction with L-selectin ligand, with a significantly reduced rate of adhesion turnover. Together, our results demonstrate that WASpI294T significantly affects lymphocyte membrane topography and L-selectin–dependent adhesion, which may be linked to defective hematopoiesis and leukocyte function in affected patients.
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- 2010
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21. Quantization of abelian varieties: Distributional sections and the transition from Kähler to real polarizations
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Thomas Baier, João P. Nunes, and José Mourão
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Geometric quantization ,Mathematics - Differential Geometry ,Theta function ,01 natural sciences ,Abelian varieties ,0103 physical sciences ,Quantization ,FOS: Mathematics ,Covariant transformation ,0101 mathematics ,Abelian group ,Mathematics ,Mathematical physics ,010102 general mathematics ,Degenerate energy levels ,Torus ,53D50 ,Differential Geometry (math.DG) ,Mathematics - Symplectic Geometry ,Pairing ,Symplectic Geometry (math.SG) ,010307 mathematical physics ,Theta functions ,Analysis ,Symplectic geometry ,Bohr–Sommerfeld fibers - Abstract
We study the dependence of geometric quantization of the standard symplectic torus on the choice of invariant polarization. Real and mixed polarizations are interpreted as degenerate complex structures. Using a weak version of the equations of covariant constancy, and the Weil-Brezin expansion to describe distributional sections, we give a unified analytical description of the quantization spaces for all nonnegative polarizations. The Blattner-Kostant-Sternberg (BKS) pairing maps between half-form corrected quantization spaces for different polarizations are shown to be transitive and related to an action of $Sp(2g,\R)$. Moreover, these maps are shown to be unitary., 24 pages; revised version, to appear in JFA
- Published
- 2010
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22. Coherent State Transforms and the Weyl Equation in Clifford Analysis
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João P. Nunes, José Mourão, and Tao Qian
- Subjects
Pure mathematics ,010102 general mathematics ,Clifford algebra ,Hilbert space ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Clifford analysis ,Mathematical Physics (math-ph) ,01 natural sciences ,Measure (mathematics) ,Functional Analysis (math.FA) ,Mathematics - Functional Analysis ,symbols.namesake ,Square-integrable function ,0103 physical sciences ,symbols ,FOS: Mathematics ,Orthonormal basis ,010307 mathematical physics ,Isomorphism ,0101 mathematics ,Weyl equation ,Mathematical Physics ,Mathematics - Abstract
We study a transform, inspired by coherent state transforms, from the Hilbert space of Clifford algebra valued square integrable functions $L^2({\mathbb R}^m,dx)\otimes {\mathbb C}_{m}$ to a Hilbert space of solutions of the Weyl equation on ${\mathbb R}^{m+1}= {\mathbb R} \times {\mathbb R}^m$, namely to the Hilbert space ${\mathcal M}L^2({\mathbb R}^{m+1},d\mu)$ of ${\mathbb C}_m$-valued monogenic functions on ${\mathbb R}^{m+1}$ which are $L^2$ with respect to an appropriate measure $d\mu$. We prove that this transform is a unitary isomorphism of Hilbert spaces and that it is therefore an analog of the Segal-Bargmann transform for Clifford analysis. As a corollary we obtain an orthonormal basis of monogenic functions on ${\mathbb R}^{m+1}$. We also study the case when ${\mathbb R}^m$ is replaced by the $m$-torus ${\mathbb T}^m.$ Quantum mechanically, this extension establishes the unitary equivalence of the Schr\"odinger representation on $M$, for $M={\mathbb R}^m$ and $M={\mathbb T}^m$, with a representation on the Hilbert space ${\mathcal M}L^2({\mathbb R} \times M,d\mu)$ of solutions of the Weyl equation on the space-time ${\mathbb R}\times M$.
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- 2016
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23. Clifford Coherent State Transforms on Spheres
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João P. Nunes, José Mourão, Pei Dang, and Tao Qian
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Pure mathematics ,Analytic continuation ,010102 general mathematics ,Clifford algebra ,Hilbert space ,General Physics and Astronomy ,Context (language use) ,Clifford analysis ,01 natural sciences ,Functional Analysis (math.FA) ,Mathematics - Functional Analysis ,symbols.namesake ,Square-integrable function ,Dirac equation ,0103 physical sciences ,symbols ,FOS: Mathematics ,010307 mathematical physics ,Geometry and Topology ,Isomorphism ,0101 mathematics ,Mathematical Physics ,Mathematics - Abstract
We introduce a one-parameter family of transforms, $U^t_{(m)}$, $t>0$, from the Hilbert space of Clifford algebra valued square integrable functions on the $m$--dimensional sphere, $L^2(S^{m},d\sigma_{m})\otimes \mathbb{C}_{m+1}$, to the Hilbert spaces, ${\mathcal M}L^2(\mathbb{R}^{m+1} \setminus \{0\},d\mu_t)$, of monogenic functions on $\mathbb{R}^{m+1}\setminus \{0\}$ which are square integrable with respect to appropriate measures, $d\mu_t$. We prove that these transforms are unitary isomorphisms of the Hilbert spaces and are extensions of the Segal-Bargman coherent state transform, $U_{(1)} : L^2(S^{1},d\sigma_{1}) \longrightarrow {\mathcal H}L^2({\mathbb{C} \setminus \{0\}},d\mu)$, to higher dimensional spheres in the context of Clifford analysis. In Clifford analysis it is natural to replace the analytic continuation from $S^m$ to $S^m_{\mathbb{C}}$ as in \cite{Ha1, St, HM} by the Cauchy--Kowalewski extension from $S^m$ to $\mathbb{R}^{m+1}\setminus \{0\}$. One then obtains a unitary isomorphism from an $L^2$--Hilbert space to an Hilbert space of solutions of the Dirac equation, that is to a Hilbert space of monogenic functions., Comment: 13 pages
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- 2016
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24. A platform for efficient, thiol-stable conjugation to albumin's native single accessible cysteine
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Mikael B. Caspersen, Antoine Maruani, Eifion Robinson, Karl Nicholls, Malcolm J. Saxton, João P. Nunes, Stephen Caddick, James R. Baker, Vijay Chudasama, Maurício Morais, and Mark E. B. Smith
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endocrine system ,education ,Biochemistry ,behavioral disciplines and activities ,Mass Spectrometry ,Protein Structure, Secondary ,Hydrolysis ,chemistry.chemical_compound ,Protein structure ,Albumins ,Organic chemistry ,Humans ,Cysteine ,Sulfhydryl Compounds ,Physical and Theoretical Chemistry ,Maleimide ,chemistry.chemical_classification ,Chemistry ,Organic Chemistry ,Albumin ,Maleates ,Hydrogen-Ion Concentration ,Combinatorial chemistry ,humanities ,3. Good health ,Thiol ,Click chemistry ,Click Chemistry ,Conjugate - Abstract
Thiol-stable albumin biologics are enabled by controlled, quantitative hydrolysis of maleimide–albumin conjugates, i.e. with no retro-Michael., Herein we report the use of bromomaleimides for the construction of stable albumin conjugates via conjugation to its native, single accessible, cysteine followed by hydrolysis. Advantages over the classical maleimide approach are highlighted in terms of quantitative hydrolysis and absence of undesirable retro-Michael deconjugation.
- Published
- 2015
25. Coherent state transforms and vector bundles on elliptic curves
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João P. Nunes, Carlos Florentino, and José Mourão
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High Energy Physics - Theory ,Mathematics - Differential Geometry ,Pure mathematics ,Rank (linear algebra) ,Unitarity ,Holomorphic function ,FOS: Physical sciences ,Vector bundle ,Theta function ,14K25, 14H60, 22E30, 65R10 ,Space (mathematics) ,Functional Analysis (math.FA) ,Moduli space ,Mathematics - Functional Analysis ,Physics::Fluid Dynamics ,Mathematics - Algebraic Geometry ,Elliptic curve ,Mathematics::Algebraic Geometry ,High Energy Physics - Theory (hep-th) ,Differential Geometry (math.DG) ,FOS: Mathematics ,Algebraic Geometry (math.AG) ,Analysis ,Mathematics - Abstract
We extend the coherent state transform (CST) of Hall to the context of the moduli spaces of semistable holomorphic vector bundles with fixed determinant over elliptic curves. We show that by applying the CST to appropriate distributions, we obtain the space of level k, rank n and genus one non-abelian theta functions with the unitarity of the CST transform being preserved. Furthermore, the shift k -> k+n appears in a natural way in this finite-dimensional framework., small misprints corrected
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- 2003
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26. Coherent State Transforms and Abelian Varieties
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José Mourão, Carlos Florentino, and João P. Nunes
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Discrete mathematics ,Pure mathematics ,Abelian variety of CM-type ,Schottky problem ,Theta function ,Elementary abelian group ,Abelian group ,Analysis ,Rank of an abelian group ,Mathematics ,Arithmetic of abelian varieties ,Free abelian group - Abstract
We extend the coherent state transform (CST) of Hall to the context of abelian varieties by considering them as quotients of the complexification of the abelian group K=U(1)g. We show that this transform, applied to appropriate distributions on K, gives all classical theta functions, and that, by defining on this space of theta functions an inner product related to the K-averaged heat kernel, the unitarity of the CST transform is still preserved.
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- 2002
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27. Optochemical Control of Engineered Trimeric P2X Receptors and Acid-Sensing Ion Channels
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João P. Nunes, Stephen Caddick, R. Alan North, Vijay Chudasama, Liam E. Browne, Joan Sim, and Laricia Bragg
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Mutation ,Chemistry ,Biophysics ,Sequence (biology) ,medicine.disease_cause ,chemistry.chemical_compound ,Membrane ,Biochemistry ,Azobenzene ,medicine ,Extracellular ,Receptor ,Acid-sensing ion channel ,Ion channel - Abstract
P2X receptors are trimeric membrane ion channels activated by extracellular ATP. Elucidation of their physiological roles has been handicapped by a lack of specific tools. In the present work, the P2X2 receptor was engineered to open and close with different wavelengths of light. We synthesized a photoswitchable crosslinker, bis(maleimido)azobenzene, of molecular dimensions appropriate to bridge cysteines introduced at different subunits at the outer pore (P329C). This produced a P2X2 receptor that was opened within milliseconds at 440 nm light and closed rapidly at 360 nm light, as measured by the ionic currents. When the P329C mutation was combined with the ATP-binding site mutation, K69A, ATP had no effect while light-induced currents were still present. The light-gated receptor displayed similar unitary currents, inward rectification and calcium permeability (PCa/PNa = 2.6), as the P2X2 receptors activated by ATP. P2X3 receptors with an equivalent mutation (P320C) could be controlled with light, displaying typical rapid desensitization. P2X3[P320C] subunits also co-assembled with native P2X2 subunits in pheochromocytoma 12 cells to form light-gated heteromeric P2X2/3 receptors. We extended this approach to acid-sensing ion channels (ASICs), which are also trimers but are unrelated in sequence to P2X receptors. The structurally equivalent mutation in human ASIC1 (G430C) was readily opened and closed by brief applications of light following modification with bis(maleimido)azobenzene. This provides functional evidence that P2X receptors and ASICs can open by a similar mechanism at the level of the pore. The generation of these engineered receptors should facilitate investigation of the functional roles of P2X receptors and ASICs in the cell, tissue and intact organism.
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- 2014
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28. Field Strength Correlators for Two-Dimensional Yang–Mills Theories Over Riemann Surfaces
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João P. Nunes and Howard J. Schnitzer
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Physics ,Nuclear and High Energy Physics ,Computation ,Riemann surface ,Astronomy and Astrophysics ,Field strength ,Yang–Mills existence and mass gap ,Contractible space ,Atomic and Molecular Physics, and Optics ,symbols.namesake ,Critical point (thermodynamics) ,Path integral formulation ,symbols ,Limit (mathematics) ,Mathematical physics - Abstract
The path integral computation of field strength correlation functions for two-dimensional Yang–Mills theories over Riemann surfaces is studied. The calculation is carried out by Abelianization, which leads to correlators that are topological. They are nontrivial as a result of the topological obstructions to the Abelianization. It is shown in the large N limit on the sphere that the correlators undergo second order phase transitions at the critical point. Our results are applied to a computation of contractible Wilson loops.
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- 1997
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29. On the Picard-Fuchs equations for massive N = 2 Seiberg-Witten theories
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José M. Isidro, Howard J. Schnitzer, João P. Nunes, and Avijit Mukherjee
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High Energy Physics - Theory ,Physics ,Massless particle ,High Energy Physics::Theory ,Nuclear and High Energy Physics ,Theoretical physics ,High Energy Physics - Theory (hep-th) ,High Energy Physics::Phenomenology ,Fundamental representation ,FOS: Physical sciences ,Gauge theory - Abstract
A new method to obtain the Picard-Fuchs equations of effective, N=2 supersymmetric gauge theories with massive matter hypermultiplets in the fundamental representation is presented. It generalises a previously described method to derive the Picard-Fuchs equations of both pure super Yang-Mills and supersymmetric gauge theories with massless matter hypermultiplets. The techniques developed are well suited to symbolic computer calculations., Comment: 29 pages, uses phyzzx.tex
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- 1997
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30. A new derivation of the Picard-Fuchs equations for effective N = 2 super Yang-Mills theories
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Howard J. Schnitzer, Avijit Mukherjee, João P. Nunes, and José M. Isidro
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High Energy Physics - Theory ,Physics ,Nuclear and High Energy Physics ,Partial differential equation ,High Energy Physics::Phenomenology ,Structure (category theory) ,FOS: Physical sciences ,Yang–Mills existence and mass gap ,Gauge (firearms) ,Massless particle ,High Energy Physics::Theory ,High Energy Physics - Theory (hep-th) ,Algebraic curve ,Gauge theory ,Differential (mathematics) ,Mathematical physics - Abstract
A new method to obtain the Picard-Fuchs equations of effective $N = 2$ supersymmetric gauge theories in 4 dimensions is developed. It includes both pure super Yang-Mills and supersymmetric gauge theories with massless matter hypermultiplets. It applies to all classical gauge groups, and directly produces a decoupled set of second-order, partial differential equations satisfied by the period integrals of the Seiberg-Witten differential along the 1-cycles of the algebraic curves describing the vacuum structure of the corresponding $N = 2$ theory., Latex version, 43 pages, a few cosmetic changes and some references added
- Published
- 1997
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31. Optical control of trimeric P2X receptors and acid-sensing ion channels
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João P. Nunes, Stephen Caddick, Laricia Bragg, Vijay Chudasama, R. Alan North, Liam E. Browne, and Joan A. Sim
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Models, Molecular ,Light ,Stereochemistry ,Molecular Sequence Data ,Molecular Conformation ,Ligands ,PC12 Cells ,Ion Channels ,Adenosine Triphosphate ,Animals ,Amino Acid Sequence ,Receptor ,Acid-sensing ion channel ,Ion channel ,Ions ,Multidisciplinary ,Microscopy, Confocal ,Voltage-gated ion channel ,Sequence Homology, Amino Acid ,Chemistry ,Light-gated ion channel ,Biological Sciences ,Rats ,Electrophysiology ,Gene Expression Regulation, Neoplastic ,Transmembrane domain ,Membrane protein ,Mutation ,Biophysics ,Mutagenesis, Site-Directed ,Ligand-gated ion channel ,Azo Compounds ,Ion Channel Gating ,Receptors, Purinergic P2X3 ,Receptors, Purinergic P2X2 - Abstract
P2X receptors are trimeric membrane proteins that function as ion channels gated by extracellular ATP. We have engineered a P2X2 receptor that opens within milliseconds by irradiation at 440 nm, and rapidly closes at 360 nm. This requires bridging receptor subunits via covalent attachment of 4,4'-bis(maleimido)azobenzene to a cysteine residue (P329C) introduced into each second transmembrane domain. The cis-trans isomerization of the azobenzene pushes apart the outer ends of the transmembrane helices and opens the channel in a light-dependent manner. Light-activated channels exhibited similar unitary currents, rectification, calcium permeability, and dye uptake as P2X2 receptors activated by ATP. P2X3 receptors with an equivalent mutation (P320C) were also light sensitive after chemical modification. They showed typical rapid desensitization, and they could coassemble with native P2X2 subunits in pheochromocytoma cells to form light-activated heteromeric P2X2/3 receptors. A similar approach was used to open and close human acid-sensing ion channels (ASICs), which are also trimers but are unrelated in sequence to P2X receptors. The experiments indicate that the opening of the permeation pathway requires similar and substantial movements of the transmembrane helices in both P2X receptors and ASICs, and the method will allow precise optical control of P2X receptors or ASICs in intact tissues.
- Published
- 2013
32. On complexified analytic Hamiltonian flows and geodesics on the space of Kahler metrics
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João P. Nunes and José M. Mourão
- Subjects
Geometric quantization ,Mathematics - Differential Geometry ,Pure mathematics ,Geodesic ,Mathematics::Complex Variables ,General Mathematics ,Holomorphic function ,Algebra ,symbols.namesake ,Differential Geometry (math.DG) ,symbols ,FOS: Mathematics ,Sheaf ,Mathematics::Differential Geometry ,Hamiltonian (quantum mechanics) ,Mathematics::Symplectic Geometry ,Mathematics ,Symplectic geometry ,Symplectic manifold ,Analytic function - Abstract
In the case of a compact real analytic symplectic manifold M we describe an approach to the complexification of Hamiltonian flows [Se, Do1, Th1] and corresponding geodesics on the space of Kahler metrics. In this approach, motivated by recent work on quantization, the complexified Hamiltonian flows act, through the Grobner theory of Lie series, on the sheaf of complex valued real analytic functions, changing the sheaves of holomorphic functions. This defines an action on the space of (equivalent) complex structures on M and also a direct action on M. This description is related to the approach of [BLU] where one has an action on a complexification M_C of M followed by projection to M. Our approach allows for the study of some Hamiltonian functions which are not real analytic. It also leads naturally to the consideration of continuous degenerations of diffeomorphisms and of Kahler structures of M. Hence, one can link continuously (geometric quantization) real, and more general non-Kahler, polarizations with Kahler polarizations. This corresponds to the extension of the geodesics to the boundary of the space of Kahler metrics. Three illustrative examples are considered. We find an explicit formula for the complex time evolution of the Kahler potential under the flow. For integral symplectic forms, this formula corresponds to the complexification of the prequantization of Hamiltonian symplectomorphisms. We verify that certain families of Kahler structures, which have been studied in geometric quantization, are geodesic families., final version
- Published
- 2013
33. Degeneration of Kähler structures and half-form quantization of toric varieties
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William D. Kirwin, José Mourão, and João P. Nunes
- Subjects
Monomial ,Chern class ,Line bundle ,Mathematical analysis ,Holomorphic function ,Geometry and Topology ,Toric manifold ,Mathematics::Symplectic Geometry ,Omega ,Hermitian matrix ,Symplectic geometry ,Mathematics ,Mathematical physics - Abstract
We study the half-form Kähler quantization of a smooth symplectic toric manifold $(X,\omega)$, such that $[ \omega/ 2\pi]- c_{1}(X)/2 \in H^{2}(X,{\mathbb{Z}} )$ and is non-negative. We define the half-form corrected quantization of $(X,\omega)$ to be given by holomorphic sections of a certain Hermitian line bundle $L\to X$ with Chern class $[ \omega/ 2\pi]- c_{1}(X)/2$. These sections then correspond to integral points of a "corrected" polytope $P_{L}$ with integral vertices. For a suitably translated moment polytope $P_{X}$ for $(X,\omega)$, we have that $P_{L}\subset P_{X}$ is obtained from $P_{X}$ by a one-half inward-pointing normal shift along the boundary. ¶ We use our results on the half-form corrected Kähler quantization to motivate a definition of half-form corrected quantization in the singular real toric polarization. Using families of complex structures studied in Baier-Florentino-Mourão-Nunes, which include the degeneration of Kähler polarizations to the vertical polarization, we show that, under this degeneration, the half-form corrected $L^{2}$-normalized monomial holomorphic sections converge to Dirac-delta-distributional sections supported on the fibers over the integral points of $P_{L}$, which correspond to corrected Bohr-Sommerfeld fibers. This result and the limit of the corrected connection, with curvature singularities along the boundary of $P_X$, justifies the direct definition we give for the corrected quantization in the singular real toric polarization. We show that the space of quantum states for this definition coincides with the space obtained via degeneration of the Kähler quantization. ¶ We also show that the BKS pairing between Kähler polarizations is not unitary in general. On the other hand, the unitary connection induced by this pairing is flat.
- Published
- 2013
34. Quality of Life among University Students with Premenstrual Syndrome
- Author
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Victor, Fernanda Figueira, Souza, Ariani Impieri, Barreiros, Cynthia Danúbia Tavares, Barros, João Lucas Nunes de, Silva, Flavia Anchielle Carvalho da, and Ferreira, Ana Laura Carneiro Gomes
- Published
- 2019
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35. Extending coherent state transforms to Clifford analysis
- Author
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William D. Kirwin, Tao Qian, João P. Nunes, and José Mourão
- Subjects
Physics ,Pure mathematics ,Mathematics::Complex Variables ,010102 general mathematics ,Clifford algebra ,Hilbert space ,Holomorphic function ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Mathematical Physics (math-ph) ,Clifford analysis ,01 natural sciences ,symbols.namesake ,Line bundle ,Dirac equation ,0103 physical sciences ,symbols ,30G35 (Primary) 46N50, 44A99 (Secondary) ,Coherent states ,010307 mathematical physics ,Supersymmetric quantum mechanics ,0101 mathematics ,Mathematical Physics - Abstract
Segal-Bargmann coherent state transforms can be viewed as unitary maps from L2 spaces of functions (or sections of an appropriate line bundle) on a manifold X to spaces of square integrable holomorphic functions (or sections) on Xℂ. It is natural to consider higher dimensional extensions of X based on Clifford algebras as they could be useful in studying quantum systems with internal, discrete, degrees of freedom corresponding to nonzero spins. Notice that the extensions of X based on the Grassmann algebra appear naturally in the study of supersymmetric quantum mechanics. In Clifford analysis, the zero mass Dirac equation provides a natural generalization of the Cauchy-Riemann conditions of complex analysis and leads to monogenic functions. For the simplest but already quite interesting case of X = ℝ, we introduce two extensions of the Segal-Bargmann coherent state transform from L2(ℝ, dx) ⊗ ℝm to Hilbert spaces of slice monogenic and axial monogenic functions and study their properties. These two transfo...
- Published
- 2016
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36. THE CUTOFF λϕ4 O(N) MODEL IN THE LARGE N LIMIT
- Author
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Howard J. Schnitzer and João P. Nunes
- Subjects
Physics ,Nuclear and High Energy Physics ,Particle physics ,Meson ,Order (ring theory) ,Astronomy and Astrophysics ,Lambda ,Resonance (particle physics) ,Triviality ,Atomic and Molecular Physics, and Optics ,Higgs boson ,Cutoff ,Symmetry breaking ,Mathematical physics - Abstract
A cutoff version of the λϕ4 O(N) model is considered to leading order in 1/N with particular attention paid to the effective potential, which is surprisingly rich in structure. With suitable restriction on a background classical field, one finds a phenomenologically viable model with spontaneously broken symmetry, a potential bounded below, and amplitudes free of tachyons. The model has an O(N − 1) singlet resonance in both weak and strong couplings, which can be interpreted as the Higgs meson in applications. Further, an unphysical resonance, which can be used to define a triviality scale for the model, appears at a mass above the cutoff mass Λ. The phenomenological aspects of our discussion are consistent with previous studies, whose results are obtained by somewhat different methods. The question of the double-scaling limit for the cutoff model is considered as an application of the effective potential. It is shown that the double-scaling limit is not possible.
- Published
- 1995
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37. A mild synthesis of N-functionalised bromomaleimides, thiomaleimides and bromopyridazinediones
- Author
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Lourdes Castañeda, James R. Baker, Vijay Chudasama, Elizabeth A. Hull, Richard J. Fitzmaurice, Antoine Maruani, João P. Nunes, Cristina Marculescu, Mark E. B. Smith, Trang M. Tran, Zoë V. F. Wright, Stephen Caddick, and Lyn H. Jones
- Subjects
Thiomaleimides ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Transferability ,Chemical modification ,Pyridazinediones ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Article ,0104 chemical sciences ,3. Good health ,Reagent synthesis ,Reagent ,Bromomaleimides ,Drug Discovery ,Reagents for cysteine modification ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
Graphical abstract, Bromomaleimides are useful building blocks in synthesis and powerful reagents for the selective chemical modification of proteins. A mild new synthesis of these reagents is described, along with the convenient transferability of the approach to dithiomaleimides and bromopyridazinediones.
- Published
- 2012
38. Complex time evolution in geometric quantization and generalized coherent state transforms
- Author
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João P. Nunes, José Mourão, and William D. Kirwin
- Subjects
Geometric quantization ,Mathematics - Differential Geometry ,High Energy Physics - Theory ,Pure mathematics ,81S10, 53D50, 22E30 ,Holomorphic function ,FOS: Physical sciences ,01 natural sciences ,symbols.namesake ,0103 physical sciences ,FOS: Mathematics ,0101 mathematics ,Mathematical Physics ,Mathematics ,010102 general mathematics ,Hilbert space ,Time evolution ,Lie group ,Mathematical Physics (math-ph) ,16. Peace & justice ,Differential Geometry (math.DG) ,High Energy Physics - Theory (hep-th) ,Mathematics - Symplectic Geometry ,Vertical tangent ,symbols ,Symplectic Geometry (math.SG) ,Cotangent bundle ,010307 mathematical physics ,Hamiltonian (quantum mechanics) ,Analysis - Abstract
For the cotangent bundle $T^{*}K$ of a compact Lie group $K$, we study the complex-time evolution of the vertical tangent bundle and the associated geometric quantization Hilbert space $L^{2}(K)$ under an infinite-dimensional family of Hamiltonian flows. For each such flow, we construct a generalized coherent state transform (CST), which is a unitary isomorphism between $L^{2}(K)$ and a certain weighted $L^{2}$-space of holomorphic functions. For a particular set of choices, we show that this isomorphism is naturally decomposed as a product of a Heisenberg-type evolution (for complex time $-\tau$) within $L^{2}(K)$, followed by a polarization--changing geometric quantization evolution (for complex time $+\tau$). In this case, our construction yields the usual generalized Segal--Bargmann transform of Hall. We show that the infinite-dimensional family of Hamiltonian flows can also be understood in terms of Thiemann's "complexifier" method (which generalizes the construction of adapted complex structures). We will also investigate some properties of the generalized CSTs, and discuss how their existence can be understood in terms of Mackey's generalization of the Stone-von Neumann theorem., Comment: 28 pages
- Published
- 2012
39. Coherent state transforms and the Mackey-Stone-Von Neumann theorem
- Author
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William D. Kirwin, José Mourão, and João P. Nunes
- Subjects
Mathematics - Differential Geometry ,High Energy Physics - Theory ,81S10, 53D50, 22E30 ,Hilbert space ,Semiclassical physics ,Lie group ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Mathematical Physics (math-ph) ,Unitary transformation ,Imaginary time ,Stone–von Neumann theorem ,symbols.namesake ,Differential Geometry (math.DG) ,High Energy Physics - Theory (hep-th) ,Mathematics - Symplectic Geometry ,Quantum mechanics ,symbols ,FOS: Mathematics ,Symplectic Geometry (math.SG) ,Covariant transformation ,Hamiltonian (quantum mechanics) ,Mathematical Physics ,Mathematics ,Mathematical physics - Abstract
Mackey showed that for a compact Lie group $K$, the pair $(K,C^{0}(K))$ has a unique non-trivial irreducible covariant pair of representations. We study the relevance of this result to the unitary equivalence of quantizations for an infinite-dimensional family of $K\times K$ invariant polarizations on $T^{\ast}K$. The K\"{a}hler polarizations in the family are generated by (complex) time-$\tau$ Hamiltonian flows applied to the (Schr\"{o}dinger) vertical real polarization. The unitary equivalence of the corresponding quantizations of $T^{\ast}K$ is then studied by considering covariant pairs of representations of $K$ defined by geometric prequantization and of representations of $C^0(K)$ defined via Heisenberg time-$(-\tau)$ evolution followed by time-$(+\tau)$ geometric-quantization-induced evolution. We show that in the semiclassical and large imaginary time limits, the unitary transform whose existence is guaranteed by Mackey's theorem can be approximated by composition of the time-$(+\tau)$ geometric-quantization-induced evolution with the time-$(-\tau)$ evolution associated with the momentum space [W. D. Kirwin and S. Wu, Momentum space for compact Lie groups and the Peter-Weyl theorem, to appear] quantization of the Hamiltonian function generating the flow. In the case of quadratic Hamiltonians, this asymptotic result is exact and unitary equivalence between quantizations is achieved by identifying the Heisenberg imaginary time evolution with heat operator evolution, in accordance with the coherent state transform of Hall.
- Published
- 2012
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40. Quantization in singular real polarizations: Kähler regularization, Maslov correction and pairings
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João P. Nunes, J. N. Esteves, and José Mourão
- Subjects
Statistics and Probability ,Physics ,Geodesic ,General Physics and Astronomy ,Semiclassical physics ,Statistical and Nonlinear Physics ,symbols.namesake ,Quantization (physics) ,Modeling and Simulation ,Pairing ,Regularization (physics) ,symbols ,Mathematics::Differential Geometry ,Configuration space ,Mathematics::Symplectic Geometry ,Mathematical Physics ,Harmonic oscillator ,Schrödinger's cat ,Mathematical physics - Abstract
We study the Maslov correction to semiclassical states by using a Kahler regularized BKS pairing map from the energy representation to the Schrodinger representation. For general semiclassical states, the existence of this regularization is based on recently found families of Kahler polarizations degenerating to singular real polarizations and corresponding to special geodesic rays in the space of Kahler metrics. In the case of the one-dimensional harmonic oscillator, we show that the correct phases associated with caustic points of the projection of the Lagrangian curves to the configuration space are correctly reproduced.
- Published
- 2015
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41. The parental care partnership in the view of parents of children with special health needs.
- Author
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de Oliveira Alves, João Manuel Nunes, Amendoeira, José Joaquim Penedos, and Charepe, Zaida Borges
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- 2017
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42. Large N Field Theory of N=2 Strings and Self-Dual Gravity
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Antal Jevicki, Mihail Mihailescu, and João P. Nunes
- Subjects
Physics ,High Energy Physics - Theory ,Gravity (chemistry) ,General Mathematics ,Applied Mathematics ,Duality (mathematics) ,General Physics and Astronomy ,Sigma ,Wess–Zumino–Witten model ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Gravitation ,Theoretical physics ,High Energy Physics::Theory ,Scaling limit ,High Energy Physics - Theory (hep-th) ,Field theory (psychology) ,Poisson algebra - Abstract
We review some aspects of the construction of self-dual gravity and the associated field theory of ${\cal N}=2$ strings in terms of two-dimensional sigma models at large $N$. The theory is defined through a large $N$ Wess-Zumino-Witten model in a nontrivial background and in a particular double scaling limit. We examine the canonical structure of the theory and describe an infinite-dimensional Poisson algebra of currents., To appear in the special issue of the Journ. of Chaos, Solitons and Fractals, 24 pages
- Published
- 1998
43. Large N WZW Field Theory Of N=2 Strings
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João P. Nunes, Antal Jevicki, and Mihail Mihailescu
- Subjects
Physics ,High Energy Physics - Theory ,Nuclear and High Energy Physics ,Gravity (chemistry) ,Amplitude ,High Energy Physics - Theory (hep-th) ,Sigma model ,FOS: Physical sciences ,Field theory (psychology) ,Point (geometry) ,Tree (set theory) ,Quantum ,Mathematical physics - Abstract
We explore the quantum properties of self-dual gravity formulated as a large $N$ two-dimensional WZW sigma model. Using a non-trivial classical background, we show that a $(2,2)$ space-time is generated. The theory contains an infinite series of higher point vertices. At tree level we show that, in spite of the presence of higher than cubic vertices, the on-shell 4 and higher point functions vanish, indicating that this model is related with the field theory of closed N=2 strings. We examine the one-loop on-shell 3-point amplitude and show that it is ultra-violet finite., This is the final version. By editorial mistake at Phys.Lett.B an older version was published in print
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- 1997
44. Synthesis of 2,4-bifunctionalised cyclopentenones from 2-furaldehyde
- Author
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João P. Nunes, Carlos A. M. Afonso, and Stephen Caddick
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chemistry.chemical_compound ,Furaldehyde ,Chemistry ,General Chemical Engineering ,Morpholine ,Organic chemistry ,General Chemistry - Abstract
Herein we report a new approach to the synthesis of 2,4-bifunctionalised cyclopentenones via one-pot conversion of 2-furaldehyde with morpholine followed by concomitant 1,4 addition and elimination. This protocol has also been extended to afford 2-hydroxy, 2-amino and 2-phenyl cyclopentenones.
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- 2013
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45. The Master Field For 2D QCD On The Sphere
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João P. Nunes and Howard J. Schnitzer
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Quantum chromodynamics ,Physics ,High Energy Physics - Theory ,Nuclear and High Energy Physics ,Field (physics) ,Riemann surface ,High Energy Physics::Lattice ,FOS: Physical sciences ,Field strength ,Gauge (firearms) ,symbols.namesake ,High Energy Physics - Theory (hep-th) ,Gauge group ,Lie algebra ,symbols ,Maximal torus ,Mathematical physics - Abstract
We continue our analysis of the field strength correlation functions of two-dimensional QCD on Riemann surfaces by studying the large $N$ limit of these correlation functions on the sphere for gauge group $U(N)$. Our results allow us to exhibit an explicit master field for the field strength $F_{\mu\nu}$ in a ``topological gauge'', given by a single master matrix in the Lie algebra of the maximal torus of the gauge group. Field correlators are obtained from traces of products of the master field. We also obtain a master field for the gauge potential $A_{\mu}$ on the sphere, consistent with the master field for the field strength., Comment: 14 pages, latex file, no macros, 1 reference added
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- 1995
46. BF Theories and Group-Level Duality
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José M. Isidro, Howard J. Schnitzer, and João P. Nunes
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High Energy Physics - Theory ,Classical group ,Physics ,Nuclear and High Energy Physics ,Topological quantum field theory ,Conformal field theory ,Riemann surface ,Duality (optimization) ,FOS: Physical sciences ,Partition function (mathematics) ,Moduli space ,Combinatorics ,symbols.namesake ,High Energy Physics::Theory ,High Energy Physics - Theory (hep-th) ,Gauge group ,symbols - Abstract
It is known that the partition function and correlators of the two-dimensional topological field theory $G_K(N)/ G_K(N)$ on the Riemann surface $\Sigma_{g,s}$ is given by Verlinde numbers, dim($V_{g,s,K}$) and that the large $K$ limit of dim($V_{g,s,K}$) gives Vol(${\cal M}_s$), the volume of the moduli space of flat connections of gauge group $G(N)$ on $\Sigma_{g,s}$, up to a power of $K$. Given this relationship, we complete the computation of Vol(${\cal M}_s$) using only algebraic results from conformal field theory. The group-level duality of $G(N)_K$ is used to show that if $G(N)$ is a classical group, then $\displaystyle \lim_{N\rightarrow \infty} G_K(N) / G_K(N)$ is a BF theory with gauge group $G(K)$. Therefore this limit computes Vol(${\cal M}^\prime_s$), the volume of the moduli space of flat connections of gauge group $G(K)$.
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- 1995
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47. Evaluation of the Prevalence of Maxillary Sinuses Abnormalities through Spiral Computed Tomography (CT)
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Drumond, João Paulo Nunes, Allegro, Bruna Bianca, Novo, Neil Ferreira, de Miranda, Sérgio Luís, and Sendyk, Wilson Roberto
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- 2017
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48. Functional magnetic resonance imaging and diffusion tensor imaging findings in a patient with ROBO3-related horizontal gaze palsy with progressive scoliosis.
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de BORBA, Fabrício Castro, de CAMPOS, Brunno Machado, GONÇALVES, João Pedro Nunes, MARTINS JUNIOR, Carlos Roberto, and FRANÇA JUNIOR, Marcondes Cavalcante
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- 2021
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49. Functional magnetic resonance imaging and diffusion tensor imaging findings in a patient with ROBO3-related horizontal gaze palsy with progressive scoliosis
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BORBA, Fabrício Castro de, CAMPOS, Brunno Machado de, GONÇALVES, João Pedro Nunes, MARTINS, Carlos Roberto, and FRANÇA, Marcondes Cavalcante
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- 2021
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50. Pyoderma gangrenosum associated with rheumatoid arthritis: a case report
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Beber, André Avelino Costa, Knob, Cristiane Faccin, Shons, Karen Regina Rosso, Neumaier, Walter, Silva, João Carlos Nunes da, and Monticielo, Odirlei André
- Abstract
Pyoderma gangrenosum is a chronic inflammatory dermatosis, which is associated with non-infectious systemic diseases such as rheumatoid arthritis and inflammatory bowel disease. It is more common in adults and may present with four distinct clinical forms, all leading to ulceration of the skin affected. Its diagnosis is clinical and demands exclusion of other causes. Treatment should be performed with local care and systemic therapy.
- Published
- 2014
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