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Free-living nematodes harbor and disseminate various soil-borne bacterial pathogens. Whether they function as vectors or environmental reservoirs for the aquatic L. pneumophila, the causative agent of Legionnaires’ disease, is unknown. A survey screening of biofilms of natural (swimming lakes) and technical (cooling towers) water habitats in Germany revealed that nematodes can act as potential reservoirs, vectors or grazers of L. pneumophila in cooling towers. Consequently, the nematode species Plectus similis and L. pneumophila were isolated from the same cooling tower biofilm and taken into a monoxenic culture. Using pharyngeal pumping assays, potential feeding relationships between P. similis and different L. pneumophila strains and mutants were examined and compared with Plectus sp., a species isolated from a L. pneumophila-positive thermal source biofilm. The assays showed that bacterial suspensions and supernatants of the L. pneumophila cooling tower isolate KV02 decreased pumping rate and feeding activity in nematodes. However, assays investigating the hypothesized negative impact of Legionella’s major secretory protein ProA on pumping rate revealed opposite effects on nematodes, which points to a species-specific response to ProA. To extend the food chain by a further trophic level, Acanthamoebae castellanii infected with L. pneumphila KV02 were offered to nematodes. The pumping rates of P. similis increased when fed with L. pneumophila-infected A. castellanii, while Plectus sp. pumping rates were similar when fed either infected or non-infected A. castellanii. This study revealed that cooling towers are the main water bodies where L. pneumophila and free-living nematodes coexist and is the first step in elucidating the trophic links between coexisting taxa from that habitat. Investigating the Legionella–nematode–amoebae interactions underlined the importance of amoebae as reservoirs and transmission vehicles of the pathogen for nematode predators., Deutsche Forschungsgemeinschaft (DFG), Peer Reviewed

This article was supported by the German Research Foundation (DFG) and the Open Access Publication Fund of Humboldt-Universität zu Berlin., Numerous lab and field studies have reported the potential of soil predatory mites for the biological control of plant-parasitic nematodes and arthropods pests. Most of these studies have utilized biocontrol agents in augmentative releases, essentially controlling the pest with the released predators. While this may be a valid approach, we hypothesize that conservation of soil mite predators with available, suitable, and accessible free-living nematodes as prey, will provide better agricultural ecosystem performance and long-range sustainability. In this manuscript, we review the relevant studies on soil predatory mite–nematode interactions and highlight their potential for conservation biological control of soil-borne pests. Additionally, we emphasize the importance of implementing environmentally sound soil management practices for the sustainability and conservation of functional soil food webs.

Fairy rings promoting circular greening belts in the vegetation can shape soil microbial communities by altering soil conditions. Knowledge about soil variables involved in this process is incomplete. We characterised the soil microbial communities of six fairy rings in a montane grassland using phospholipid fatty acid (PLFA) profiling, and studied if changes in soil properties corresponded to changes in soil microbial PLFA patterns. Exchangeable potassium (K) decreased inside the current rings, while soil moisture increased in the zones where the greening belts were two years before sampling (R2015). Fairy ring associated changes in PLFA composition were highly related to soil K. Gram-negative bacteria were associated with the zones outside the ring with the highest K content, whereas Gram-positive bacteria proportions increased inside the ring-affected zones. An environmental stress indicator, the iso to anteiso ratio of PLFA 17:0, decreased in the R2015 zones, coinciding with the highest soil moisture contents. Our findings highlight the unreported importance of soil K in fairy ring dynamics affecting microbial communities. This common omission could lead to incorrect conclusions. Hence, the effects of fairy rings on soil should be further tested. Highlights Exchangeable potassium (K) decreased inside the current fairy rings. Fairy ring associated changes in PLFA microbial composition were present related to soil K. Soil moisture increased in the zones where the rings were 2 years before sampling. An environmental stress indicator decreased in those areas.

Umweltveränderungen durch natürliche und/oder menschliche Einflüsse (insbesondere der Verlust und die Fragmentierung von Lebensraum) sind wichtige Faktoren, die zum weltweiten Artenschwund beitragen. Einer der entscheidendsten Beiträge zum weltweiten Rückgang der biologischen Vielfalt, ist der kommerzielle Holzeinschlag. Insbesondere in tropischen Regenwäldern, etwa in Westafrika, ist dies besonders besorgniserregend, da wenig untersuchte, diverse Wirbeltiergemeinschaften von einem starken kommerziellen Holzeinschlag betroffen sind. Frühere Studien haben bereits die negativen Auswirkungen großflächiger Abholzung auf die taxonomische und funktionale Vielfalt von Amphibiengemeinschaften, aber auch auf die Gesundheit von Individuen identifiziert. Umweltveränderungen können sich also auch nachteilig auf eine Wirts- Parasit-Beziehung auswirken, was nicht zuletzt zu einer verringerten Überlebensfähigkeit der Wirtsarten führen kann. Die Untersuchung der Auswirkungen von Störungen Abholzung und Umweltveränderungen auf Amphibien, sowie auf bestehende Wirts-Parasiten-Beziehungen sind daher von größter Bedeutung um nachhaltige Waldwirtschaft und zukünftige Naturschutzmaßnahmen planen zu können. In dieser Arbeit möchte ich mittels eines Regenerationsgradienten nach einer Störung (Abholzung) untersuchen, wie sich die Dynamik einer Amphibiengemeinschaft verschiebt und wie diese Störung die Wirts-Parasit-Beziehung beeinflusst. Ich verwende einen kombinierten Datensatz (Amphibie [Wirt], Milbe [Parasit] und Umweltbedingungen [Habitat]) der über zwei Zeiträumen im Abstand von 15 Jahren (1999-2000 und 2016-2017) an identischen Standorten (vor 45 Jahren abgeholzter Wald und Primärwald) im Taï-Nationalpark (TNP) in der Elfenbeinküste gesammelt wurde, um die Anpassungsfähigkeit von Fröschen und ihren Parasiten an sich ändernde Umgebungen zu untersuchen. In einem ersten Artikel unterstreiche ich die Bedeutung auch kleiner Waldgebiete als potenzielle Quellen für unbeschriebene Biodiversitä, Environmental changes due to both natural phenomena and/or human disturbance (i.e. habitat loss, disturbance and fragmentation) are important factors contributing to global species declines. Commercial logging is amongst the greatest contributor to this disturbance resulting in widespread biodiversity declines. In tropical rainforests, particularly those of West Africa, this is particularly troubling as diverse vertebrate assemblages are subject to heavy commercial logging. Previous studies have identified negative impacts of these logging practices on the taxonomic and functional diversity of amphibian communities and species. Furthermore, logging and other environmental changes may affect host-parasite interactions, resulting in exacerbated negative impacts of these pressures and reduced survivability of host species. As such, determining the effects of logging on amphibians, their subsequent recovery following selective logged forest, and the effects of environmental change on host-parasite relationships, will be paramount for informing future conservation action. In this thesis, I aim to determine how amphibian community dynamics shift over a regeneration gradient following disturbance (logging), and how this disturbance influences amphibian-parasite interactions. I use combined data sets (amphibian, parasite and habitat) from two time periods 15 years apart (1999-2000 and 2016-2017) collected in identical sites (logged forest since 45 years and old growth forest) within Taï National Park (TNP) Ivory Coast, in order to examine the adaptive capacities of frogs and their parasites to changing environments. In the first paper, I underline the importance of forest, even small, as potential source of undescribed biodiversity. In that small swamp forest, never survey before located in southeastern Ivory Coast, I found a new leaf-litter species of the Phrynobatrachus genus. Based on morphological characteristics, considerable molecular genetic distance to other West Af

Quantitative fatty acid signature analysis (QFASA) as a biochemical tool to study the diet composition of predators is frequently used in marine ecology to infer trophic links in vertebrate consumers. However, the potential and challenges of this method in other ecosystems have only recently been studied. The application in soil ecosystems leads to hurdles not encountered in the marine, such as the low similarity of fatty acid signatures between resource and consumer. So far, diet estimation attempts have been semisuccessful, necessitating to adapt QFASA for use in soil food webs. Dietary fat content may play an important role, as it influences consumer metabolism, and thus calibration coefficients for fatty acid trophic transfer. A series of feeding trials with baker's yeast spiked with five different pure fatty acids at various concentrations was conducted with Collembola, and the changes in calibration coefficients were observed. From there, equations were gained through regression analysis and new sets of calibration coefficients were calculated. QFASA was applied on a range of basal resources and the results compared with previously defined calibration coefficients. Calibration coefficients changed with the proportion of fatty acids in the diet and differed between the three Collembolan species. The re-estimation of diets showed an improvement of model performance by the new calibration coefficients and indicated several modes of fatty acid assimilation. These greatly influence the outcome of diet estimation, for example, algal and bacterial diets are likely underestimated due to high metabolic turnover rates. The application of QFASA in soil ecosystems remains challenging. The variation in calibration coefficients and the resulting decrease in estimation deviation indicate the merit of calculating calibration coefficients from consumer signatures through linear or exponential equations. Ideally, the method should, when extended to the entire fatty acid signatu, Peer Reviewed

Endogenous rhythmic growth (ERG) is displayed by many tropical and some major temperate tree species and characterized by alternating root and shoot flushes (RF and SF). These flushes occur parallel to changes in biomass partitioning and in allocation of recently assimilated carbon and nitrogen. To address how biotic interactions interplay with ERG, we cross-compared the RF/SF shifts in oak microcuttings in the presence of pathogens, consumers and a mycorrhiza helper bacterium, without and with an ectomycorrhizal fungus (EMF), and present a synthesis of the observations. The typical increase in carbon allocation to sink leaves during SF did not occur in the presence of root or leaf pathogens, and the increase in nitrogen allocation to lateral roots during RF did not occur with the pathogens. The RF/SF shifts in resource allocation were mostly restored upon additional interaction with the EMF. Its presence led to increased resource allocation to principal roots during RF, also when the oaks were inoculated additionally with other interactors. The interactors affected the alternating, rhythmic growth and resource allocation shifts between shoots and roots. The restoring role of the EMF on RF/SF changes in parallel to the corresponding enhanced carbon and nitrogen allocation to sink tissues suggests that the EMF is supporting plants in maintaining the ERG., Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659, Helmholtz-Zentrum für Umweltforschung GmbH - UFZ (4215), Peer Reviewed

Microplastics (MP) are pervasive in the environment. There is ample evidence of negative MP effects on biota in aquatic ecosystems, though little is known about MP effects in terrestrial ecosystems. Given numerous entry routes of MP into soils, soil organisms are likely to be exposed to MP. We compared potential toxicological effects of MP from (i) low-density polyethylene (LDPE) (mean diameter ± standard deviation: 57 ± 40 μm) and (ii) a blend of biodegradable polymers polylactide (PLA) and poly(butylene adipate-co-terephthalate) (PBAT) (40 ± 31 μm) on the reproduction and body length of the soil-dwelling bacterivorous nematode Caenorhabditis elegans. Feed suspensions without (control) or with MP (treatments) at concentrations of 1, 10, and 100 mg MP L–1 were prepared and nematodes were exposed to those suspensions on agar plates until completion of their reproductive phase (∼6 days). Using Nile red-stained PLA/PBAT MP particles and fluorescence microscopy, we demonstrated the ingestion of MP by C. elegans into pharynges and intestines. Under MP exposure, nematodes had fewer offspring (up to 22.9%) compared to nematodes in the control group. This decline was independent on the plastic type. We detected a tendency toward greater decreases in offspring at higher concentrations. Despite hints of negative effects on nematode body length under MP exposure, we could not derive a consistent pattern. We conclude that in MP-contaminated soils, the reproduction of nematodes, central actors in the soil food web, can be affected, with potentially negative implications for key soil functions, e.g., the regulation of soil biogeochemical cycles., Peer Reviewed

We here review the ecological role of essential nutritional biomolecules [fatty acids (FA), amino acids (AA), sterols, vitamins] in aquatic and terrestrial food webs, encompassing the forces behind their environmental distribution. Across ecosystems, mutualistic relationships frequently ensure exchanges of vitamins between producer and demander, especially between B12 and other B vitamins as well as the AA methionine. In contrast, FA, sterols and most AA are transferred up the food chain via classical predatorprey interactions, and therefore have good biomarker potential for trophic interactions. As biomass-flow depends on the absolute amounts of potential limiting resources, considering solely the relative share in the respective biochemical group may underor overestimate the availability to consumers. Moreover, if not accounted for, “hidden” trophic channels, such as gut symbionts as well as metabolic conversion of precursor molecules, can hamper food web analyses. Fundamental differences exist between aquatic and terrestrial ecosystems: Vitamin B12 produced by ammonium oxidizing Archaea is essential to many aquatic algae, whereas terrestrial plants escaped this dependency by using B12 independent enzymes. Long-chain &3 polyunsaturated FA (LC-&3PUFA) in aquatic systemsmainly originate fromplanktonic algae, while in terrestrial systems, belowground invertebrates can well be a source, also supporting aboveground biota. Interlinks from terrestrial to aquatic ecosystems are of a biochemically totally different nature than vice versa. While biomass rich in proteins and LC-&3PUFA is transferred to land, e.g., by trophic relationships, the link from terrestrial to aquatic ecosystems provides recalcitrant plant carbon, mainly devoid of essential nutrients, fuelling detrital food chains. Recent global changes influence food webs via altered input and transfer of essential biomolecules, but separating the effects of nutrients, CO2, and warming is not trivial. Current evolut, Peer Reviewed

Peer Reviewed

Anthropogenic climate change is altering the functioning of terrestrial ecosystems. Agricultural systems are particularly vulnerable to climate change as they are frequently disturbed by intensified management practices. This also threatens belowground organisms that are responsible for providing crucial ecosystem functions and services, such as nutrient cycling and plant disease suppression. Amongst these organisms, earthworms are of particular importance as they can modulate the effects of climate change on soil organisms by modifying the biotic and abiotic soil conditions. However, they are also known to decline under intensified management, justifying their use as key biotic indicators of intensified agriculture. Yet, our knowledge of the responses of belowground species to the interacting effects of warming and land-use intensification (simulated by earthworm reduction in the experimental setup) remains limited. Here, we tested the interactive effects of soil warming and reduced earthworm densities on soil protists, nematodes, meso- and macrofauna, and their diversity in a common barley system in the Hohenheim Climate Change Experiment. We found that belowground species richness was lowest at elevated temperature and reduced earthworm densities, indicating that earthworms can buffer warming effects on belowground biodiversity. Furthermore, warming increased the densities of plant feeding nematodes, and herbivorous macrofauna benefitted from reduced earthworm densities. Our results indicate that warming and reduced earthworm densities may simultaneously modify the functioning and service provisioning of soils via shifts in diversity and density of soil biota that would likely lead to simplified below ground food webs. These findings thus highlight the importance of maintaining greater densities of ecosystem engineers like earthworms that may help buffering the detrimental effects of climate warming in agricultural systems.

While forest management strongly influences biodiversity, it remains unclear how the structural and compositional changes caused by management affect different community dimensions (e.g. richness, specialisation, abundance or completeness) and how this differs between taxa. We assessed the effects of nine forest features (representing stand structure, heterogeneity and tree composition) on thirteen above‐ and belowground trophic groups of plants, animals, fungi and bacteria in 150 temperate forest plots differing in their management type. Canopy cover decreased light resources, which increased community specialisation but reduced overall diversity and abundance. Features increasing resource types and diversifying microhabitats (admixing of oaks and conifers) were important and mostly affected richness. Belowground groups responded differently to those aboveground and had weaker responses to most forest features. Our results show that we need to consider forest features rather than broad management types and highlight the importance of considering several groups and community dimensions to better inform conservation.

Das Aussterberisiko einer Art ist nicht zufällig, sondern wird von mehreren Faktoren bestimmt, die geografische, ökologische und morphologische Merkmale umfassen. Einige dieser Merkmale sind Teil der Kriterien zur Einschätzung der Gefährdung einer Art, wie zum Beispiel in der Roten Liste der IUCN. Diese Beurteilungen sind ein wichtiges Werkzeug für den Artenschutz, da sie eine Verteilung der Maßnahmen auf die am stärksten gefährdeten Arten ermöglichen. Dies ist besonders wichtig für Amphibien, die Wirbeltiergruppe mit dem derzeit höchsten Anteil an bedrohten Arten. Bei einem großen Teil der Arten fehlt jedoch eine Einschätzung des Aussterberisikos. Weiter mangelt es auch an einer endgültigen Verifizierung des Einflusses der genutzten Merkmale auf das Aussterberisiko, da Aussterbeereignisse auf neontologischen Zeitskalen schwer zu erkennen sind. Der Fossilbericht stellt ein enormes Archiv an bereits geschehenen Aussterbeereignissen dar und bietet die Möglichkeit den Einfluss bestimmter Merkmale auf die Gefährdung zu testen. In der vorliegenden Arbeit untersuche ich Merkmale von Amphibienarten, die zum Aussterberisiko dieser zunehmend gefährdeten Gruppe beitragen und bestätige die Bedeutung der geographischen Reichweite für das Aussterberisiko. Die in dem sich aktuell entwickelnden Gebiet Conservation Paleobiology angesiedelte Arbeit konzentriert sich auf die Verbindung von paläontologischen und neontologischen Daten, und wie diese Kombination dazu beitragen kann das Wissen über Aussterberisiko-beeinflussende Faktoren zu erweitern. Dies wird durch die Analyse verschiedener im Fossilbericht überlieferter Artmerkmale und der Kombination der Erkenntnisse mit Ergebnissen der Roten Liste und Klimadaten erreicht. In meiner Arbeit zeige ich mögliche Anwendungen des Fossilberichts auf aktuellen Themen des Artenschutzes und wie eine Kombination beider Bereiche zum tieferen Verständnis von Gefährdungsfaktoren beitragen kann., The extinction risk of a species is not random, but rather shaped by several factors comprising geographical, environmental and morphological traits. Some of these traits have been incorporated in assessment procedures for the classification of extant species' extinction risk, such as the International Union for Conservation of Nature (IUCN) Red List. These assessments are an important tool for conservation purposes, as they direct the available resources to species that are most reliant on support. This is especially important for amphibians, which are the the most endangered terrestrial vertebrate taxon today. However, a large number of species lack an assessment for extinction risk. Also, additional verification of the general influence of incorporated traits on extinction risk is needed, as real extinction events are difficult to detect on neontological time scales. The fossil record offers the opportunity to test the influence of certain traits on extinction risk as it provides an enormous archive of extinction events that already happened. In this thesis, I examine traits in amphibian species that contribute to the extinction risk of this increasingly endangered group and provide support for the importance of geographic range size on the extinction risk of species. Placed in the developing field of Conservation Paleobiology, the study concentrates on the connection between paleontological and neontological data and how this unique combination can add to the knowledge about traits that shaped the extinction risk of amphibian species. This is achieved by investigating species traits, conserved in the amphibian fossil record, and combining these findings with results from the IUCN Red List and climate data. The present dissertation shows possible applications of the fossil record to current questions in conservation biology and shows how a combination of both fields contributes to the understanding of factors that influence the extinction risk of species.

To keep pace with the rising number of detected mycotoxins, there is a growing need for fast and reliable toxicity tests to assess potential threats to food safety. Toxicity tests with the bacterial-feeding nematode Caenorhabditis elegans as the model organism are well established. In this study the C. elegans wildtype strain N2 (var. Bristol) was used to investigate the toxic effects of the food-relevant mycotoxins citrinin (CIT) and zearalenone-14-sulfate (ZEA-14-S) and zearalenone (ZEA) on different life cycle parameters including reproduction, thermal and oxidative stress resistance and lifespan. The metabolization of the mycotoxins by the nematodes in vivo was investigated using HPLC-MS/MS. ZEA was metabolized in vivo to the reduced isomers α-zearalenol (α-ZEL) and β-ZEL. ZEA-14-S was reduced to α-/β-ZEL-14-sulfate and CIT was metabolized to mono-hydroxylated CIT. All mycotoxins tested led to a significant decrease in the number of nematode offspring produced. ZEA and CIT displayed negative effects on stress tolerance levels and for CIT an additional shortening of the mean lifespan was observed. In the case of ZEA-14-S, however, the mean lifespan was prolonged. The presented study shows the applicability of C. elegans for toxicity testing of emerging food mycotoxins for the purpose of assigning potential health threats., Peer Reviewed